Wall clock time and date at job start Tue Mar 31 2020 21:40:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 N 1.31131 * 126.54865 * 2 1 4 4 C 1.34492 * 105.61244 * 180.02562 * 3 2 1 5 5 C 1.50703 * 126.29105 * 179.97438 * 4 3 2 6 6 H 1.09007 * 109.50159 * 344.91749 * 5 4 3 7 7 C 1.53100 * 109.50489 * 105.00049 * 5 4 3 8 8 N 1.47018 * 109.25742 * 176.79004 * 7 5 4 9 9 C 1.46894 * 111.00123 * 177.61068 * 8 7 5 10 10 H 1.09004 * 109.47303 * 59.87917 * 9 8 7 11 11 C 1.53002 * 109.47069 * 299.88226 * 9 8 7 12 12 C 1.50702 * 109.47224 * 179.88514 * 9 8 7 13 13 O 1.21280 * 119.99990 * 29.91203 * 12 9 8 14 14 N 1.34776 * 119.99732 * 209.91510 * 12 9 8 15 15 C 1.46500 * 120.00192 * 354.86713 * 14 12 9 16 16 C 1.46503 * 119.99732 * 174.87432 * 14 12 9 17 17 C 1.50700 * 109.47195 * 89.99362 * 16 14 12 18 18 H 1.07995 * 120.00175 * 0.02562 * 17 16 14 19 19 C 1.37878 * 119.99817 * 179.97438 * 17 16 14 20 20 N 1.31509 * 119.99905 * 179.97438 * 19 17 16 21 21 Si 1.86796 * 120.00170 * 0.02562 * 19 17 16 22 22 H 1.48506 * 109.47430 * 89.99390 * 21 19 17 23 23 H 1.48503 * 109.47274 * 209.99593 * 21 19 17 24 24 H 1.48499 * 109.47162 * 329.99545 * 21 19 17 25 25 C 1.47018 * 110.74893 * 301.38276 * 8 7 5 26 26 C 1.53100 * 109.25684 * 58.61764 * 25 8 7 27 27 O 1.43012 * 109.50961 * 224.78822 * 5 4 3 28 28 N 1.29945 * 107.42586 * 0.24354 * 4 3 2 29 29 O 1.21303 * 110.25126 * 359.57703 * 28 4 3 30 30 H 1.09001 * 109.46854 * 90.00103 * 1 2 3 31 31 H 1.09004 * 109.47257 * 209.99928 * 1 2 3 32 32 H 1.08998 * 109.47123 * 329.99997 * 1 2 3 33 33 H 1.09000 * 109.50793 * 56.85252 * 7 5 4 34 34 H 1.08999 * 109.54339 * 296.74134 * 7 5 4 35 35 H 1.09004 * 109.46718 * 56.73162 * 11 9 8 36 36 H 1.09003 * 109.47099 * 296.73420 * 11 9 8 37 37 H 1.09002 * 109.47317 * 176.72603 * 11 9 8 38 38 H 1.08995 * 109.46787 * 94.49663 * 15 14 12 39 39 H 1.09004 * 109.46928 * 214.49433 * 15 14 12 40 40 H 1.09002 * 109.46895 * 334.49403 * 15 14 12 41 41 H 1.08997 * 109.46840 * 209.99543 * 16 14 12 42 42 H 1.09000 * 109.47002 * 329.99723 * 16 14 12 43 43 H 0.97008 * 120.00243 * 180.02562 * 20 19 17 44 44 H 1.09004 * 109.50278 * 178.54735 * 25 8 7 45 45 H 1.08995 * 109.50596 * 298.68428 * 25 8 7 46 46 H 1.09000 * 109.50795 * 183.21081 * 26 25 8 47 47 H 1.09007 * 109.54432 * 63.10681 * 26 25 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2879 1.0534 0.0000 4 6 3.5440 0.5729 -0.0006 5 6 4.8112 1.3886 -0.0014 6 1 4.5800 2.4198 -0.2688 7 6 5.4439 1.3515 1.3923 8 7 6.7182 2.0843 1.3660 9 6 7.3320 2.1211 2.7000 10 1 7.5192 1.1032 3.0421 11 6 6.3860 2.8217 3.6774 12 6 8.6344 2.8762 2.6331 13 8 8.7799 3.7635 1.8192 14 7 9.6377 2.5654 3.4777 15 6 9.4251 1.5725 4.5337 16 6 10.9407 3.2206 3.3398 17 6 10.9633 4.4747 4.1751 18 1 10.0941 4.7555 4.7514 19 6 12.0940 5.2632 4.2044 20 7 12.1135 6.3579 4.9329 21 14 13.5976 4.7774 3.2082 22 1 13.5119 5.3831 1.8551 23 1 14.8228 5.2641 3.8918 24 1 13.6535 3.2985 3.0858 25 6 7.6365 1.4969 0.3796 26 6 6.9818 1.5326 -1.0039 27 8 5.7302 0.8426 -0.9514 28 7 3.4645 -0.7241 -0.0062 29 8 2.3029 -1.0736 -0.0006 30 1 -0.3633 0.0000 -1.0277 31 1 -0.3634 -0.8900 0.5138 32 1 -0.3633 0.8900 0.5138 33 1 5.6251 0.3165 1.6823 34 1 4.7705 1.8183 2.1110 35 1 5.4239 2.3093 3.6823 36 1 6.2447 3.8571 3.3673 37 1 6.8154 2.7977 4.6790 38 1 9.7542 0.5940 4.1840 39 1 9.9976 1.8539 5.4176 40 1 8.3653 1.5310 4.7854 41 1 11.7252 2.5441 3.6789 42 1 11.1094 3.4775 2.2941 43 1 12.9089 6.9129 4.9533 44 1 8.5633 2.0703 0.3585 45 1 7.8527 0.4643 0.6534 46 1 7.6352 1.0466 -1.7285 47 1 6.8145 2.5678 -1.3016 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000330762049.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:40:08 Heat of formation + Delta-G solvation = 19.872603 kcal Electronic energy + Delta-G solvation = -30199.241757 eV Core-core repulsion = 26000.912374 eV Total energy + Delta-G solvation = -4198.329383 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -45.94106 -40.35889 -38.94623 -36.33578 -35.95725 -34.90560 -34.07828 -32.61806 -31.56144 -31.18041 -29.21953 -28.47717 -26.99982 -26.17771 -25.46915 -23.84500 -23.34106 -22.39157 -21.37209 -20.44160 -18.54415 -18.48593 -17.84357 -16.97397 -16.96557 -16.63769 -16.42738 -15.45759 -15.38980 -15.20969 -14.94919 -14.53140 -14.29089 -14.24381 -13.91889 -13.73624 -13.72787 -13.23665 -13.05500 -12.63831 -12.52750 -12.37485 -12.34271 -12.16678 -12.01899 -11.76935 -11.70049 -11.62737 -11.46659 -11.37224 -11.26285 -10.90577 -10.78046 -10.54325 -10.31499 -10.16503 -9.86813 -9.54947 -8.97410 -8.60035 -8.42483 -7.73805 -6.09421 -4.08120 0.82049 1.78838 2.47713 2.83450 3.20058 3.27628 3.33149 3.35058 3.41400 3.74240 3.85800 3.98255 4.38236 4.49294 4.62173 4.73893 4.78178 4.79602 4.82480 4.97872 5.07510 5.09511 5.14742 5.24074 5.24792 5.31653 5.34883 5.39501 5.49286 5.51519 5.64877 5.66486 5.76045 5.79925 5.81535 5.86933 6.09695 6.29248 6.60613 6.73759 6.77215 6.87229 6.92111 7.29628 7.59183 7.85627 8.19382 8.45587 8.91085 8.96459 9.50524 11.03987 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.026131 B = 0.002400 C = 0.002326 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1071.260368 B =11663.513319 C =12037.488794 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 C 0.175 3.825 3 N -0.472 5.472 4 C 0.178 3.822 5 C 0.189 3.811 6 H 0.103 0.897 7 C 0.031 3.969 8 N -0.510 5.510 9 C 0.067 3.933 10 H 0.058 0.942 11 C -0.142 4.142 12 C 0.512 3.488 13 O -0.517 6.517 14 N -0.599 5.599 15 C 0.080 3.920 16 C 0.218 3.782 17 C -0.527 4.527 18 H 0.075 0.925 19 C 0.072 3.928 20 N -0.897 5.897 21 Si 0.876 3.124 22 H -0.273 1.273 23 H -0.285 1.285 24 H -0.267 1.267 25 C 0.011 3.989 26 C 0.071 3.929 27 O -0.377 6.377 28 N -0.357 5.357 29 O 0.081 5.919 30 H 0.102 0.898 31 H 0.098 0.902 32 H 0.106 0.894 33 H 0.047 0.953 34 H 0.096 0.904 35 H 0.062 0.938 36 H 0.076 0.924 37 H 0.070 0.930 38 H 0.044 0.956 39 H 0.077 0.923 40 H 0.061 0.939 41 H 0.030 0.970 42 H 0.035 0.965 43 H 0.264 0.736 44 H 0.104 0.896 45 H 0.041 0.959 46 H 0.105 0.895 47 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.843 -16.520 -7.958 28.519 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.046 4.046 3 N -0.207 5.207 4 C -0.095 4.095 5 C 0.129 3.871 6 H 0.121 0.879 7 C -0.098 4.098 8 N -0.236 5.236 9 C -0.045 4.045 10 H 0.076 0.924 11 C -0.199 4.199 12 C 0.297 3.703 13 O -0.392 6.392 14 N -0.332 5.332 15 C -0.064 4.064 16 C 0.097 3.903 17 C -0.565 4.565 18 H 0.093 0.907 19 C -0.131 4.131 20 N -0.535 5.535 21 Si 0.703 3.297 22 H -0.199 1.199 23 H -0.211 1.211 24 H -0.191 1.191 25 C -0.117 4.117 26 C -0.006 4.006 27 O -0.295 6.295 28 N -0.063 5.063 29 O 0.019 5.981 30 H 0.120 0.880 31 H 0.117 0.883 32 H 0.124 0.876 33 H 0.065 0.935 34 H 0.114 0.886 35 H 0.081 0.919 36 H 0.095 0.905 37 H 0.089 0.911 38 H 0.063 0.937 39 H 0.096 0.904 40 H 0.080 0.920 41 H 0.048 0.952 42 H 0.053 0.947 43 H 0.074 0.926 44 H 0.122 0.878 45 H 0.060 0.940 46 H 0.123 0.877 47 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -20.912 -15.631 -8.606 27.490 hybrid contribution 1.015 -0.815 0.120 1.307 sum -19.897 -16.446 -8.485 27.173 Atomic orbital electron populations 1.20411 0.79999 1.06010 1.05524 1.28877 0.98990 0.80612 0.96082 1.71846 0.99751 1.28940 1.20185 1.25218 0.94405 0.88030 1.01856 1.19921 0.82483 0.94863 0.89786 0.87942 1.22734 0.92950 0.97669 0.96491 1.61893 1.03321 1.52416 1.05937 1.21695 0.94360 0.98827 0.89590 0.92377 1.21813 0.97957 1.02228 0.97946 1.19999 0.84210 0.84148 0.81945 1.90683 1.80814 1.29890 1.37788 1.47867 1.13549 1.41039 1.30706 1.21726 1.01411 0.91195 0.92075 1.19655 0.79176 0.93385 0.98078 1.21302 1.01323 1.06038 1.27876 0.90736 1.24865 0.98489 0.94633 0.95086 1.69895 1.29330 1.14075 1.40219 0.86854 0.82680 0.79268 0.80883 1.19899 1.21055 1.19150 1.22939 0.97801 0.98448 0.92503 1.22743 0.83544 0.98020 0.96260 1.87980 1.25776 1.56990 1.58767 1.74709 0.96857 1.15629 1.19056 1.85337 1.11550 1.35853 1.65366 0.87967 0.88323 0.87576 0.93500 0.88590 0.91936 0.90527 0.91122 0.93729 0.90426 0.92028 0.95221 0.94745 0.92563 0.87755 0.94036 0.87655 0.91241 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.15 10.51 36.01 0.38 0.23 16 2 C 0.17 1.42 8.51 -13.06 -0.11 1.31 16 3 N -0.47 -5.33 11.55 -9.87 -0.11 -5.44 16 4 C 0.18 2.27 7.11 -156.37 -1.11 1.16 16 5 C 0.19 2.45 3.36 -27.83 -0.09 2.36 16 6 H 0.10 1.31 8.14 -51.93 -0.42 0.89 16 7 C 0.03 0.39 4.61 -3.71 -0.02 0.37 16 8 N -0.51 -7.54 4.34 -227.71 -0.99 -8.53 16 9 C 0.07 1.02 1.61 -68.87 -0.11 0.91 16 10 H 0.06 0.79 6.80 -51.93 -0.35 0.44 16 11 C -0.14 -1.94 8.87 37.16 0.33 -1.61 16 12 C 0.51 10.31 5.70 -10.98 -0.06 10.25 16 13 O -0.52 -12.56 15.06 5.56 0.08 -12.48 16 14 N -0.60 -12.22 2.86 -182.95 -0.52 -12.74 16 15 C 0.08 1.22 9.88 59.85 0.59 1.81 16 16 C 0.22 5.28 4.21 -5.19 -0.02 5.26 16 17 C -0.53 -15.11 9.94 -34.44 -0.34 -15.45 16 18 H 0.07 2.35 8.06 -52.49 -0.42 1.93 16 19 C 0.07 2.09 5.47 -17.82 -0.10 1.99 16 20 N -0.90 -27.69 13.96 55.43 0.77 -26.91 16 21 Si 0.88 21.54 27.47 -169.99 -4.67 16.87 16 22 H -0.27 -6.76 7.11 56.52 0.40 -6.36 16 23 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 24 H -0.27 -6.15 6.54 56.52 0.37 -5.78 16 25 C 0.01 0.16 5.27 -3.71 -0.02 0.14 16 26 C 0.07 0.89 7.01 37.21 0.26 1.15 16 27 O -0.38 -5.22 10.45 -35.23 -0.37 -5.59 16 28 N -0.36 -4.61 12.16 30.90 0.38 -4.24 16 29 O 0.08 0.82 11.31 18.11 0.20 1.02 16 30 H 0.10 0.11 8.14 -51.93 -0.42 -0.32 16 31 H 0.10 0.04 8.14 -51.93 -0.42 -0.38 16 32 H 0.11 0.19 8.14 -51.93 -0.42 -0.23 16 33 H 0.05 0.61 8.14 -51.93 -0.42 0.18 16 34 H 0.10 1.12 6.12 -51.93 -0.32 0.80 16 35 H 0.06 0.69 6.19 -51.93 -0.32 0.37 16 36 H 0.08 1.19 8.14 -51.93 -0.42 0.77 16 37 H 0.07 0.93 6.98 -51.93 -0.36 0.56 16 38 H 0.04 0.58 8.14 -51.93 -0.42 0.16 16 39 H 0.08 1.23 8.11 -51.93 -0.42 0.81 16 40 H 0.06 0.79 5.25 -51.93 -0.27 0.52 16 41 H 0.03 0.69 7.13 -51.93 -0.37 0.32 16 42 H 0.03 0.89 6.93 -51.93 -0.36 0.53 16 43 H 0.26 7.62 8.31 -40.82 -0.34 7.29 16 44 H 0.10 1.73 6.12 -51.93 -0.32 1.41 16 45 H 0.04 0.57 8.14 -51.93 -0.42 0.15 16 46 H 0.11 1.10 8.14 -51.93 -0.42 0.67 16 47 H 0.07 0.87 8.14 -51.92 -0.42 0.45 16 LS Contribution 379.37 15.07 5.72 5.72 Total: -1.00 -36.90 379.37 -6.85 -43.75 By element: Atomic # 1 Polarization: 5.59 SS G_CDS: -6.91 Total: -1.32 kcal Atomic # 6 Polarization: 10.31 SS G_CDS: -0.43 Total: 9.88 kcal Atomic # 7 Polarization: -57.38 SS G_CDS: -0.48 Total: -57.86 kcal Atomic # 8 Polarization: -16.96 SS G_CDS: -0.08 Total: -17.04 kcal Atomic # 14 Polarization: 21.54 SS G_CDS: -4.67 Total: 16.87 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -36.90 -6.85 -43.75 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000330762049.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.624 kcal (2) G-P(sol) polarization free energy of solvation -36.903 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.722 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.849 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.752 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.873 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds