Wall clock time and date at job start Tue Mar 31 2020 22:38:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53007 * 109.46919 * 2 1 4 4 C 1.53000 * 112.99707 * 179.97438 * 3 2 1 5 5 N 1.46499 * 109.46900 * 293.63188 * 4 3 2 6 6 C 1.34840 * 126.58815 * 124.67766 * 5 4 3 7 7 C 1.36667 * 106.82300 * 179.97438 * 6 5 4 8 8 C 1.47441 * 125.77785 * 179.97438 * 7 6 5 9 9 O 1.21619 * 120.00166 * 4.97435 * 8 7 6 10 10 N 1.34775 * 119.99915 * 184.98503 * 8 7 6 11 11 C 1.36957 * 120.00419 * 354.93294 * 10 8 7 12 12 H 1.08002 * 119.99776 * 313.31773 * 11 10 8 13 13 C 1.38989 * 120.00350 * 133.31097 * 11 10 8 14 14 N 1.31397 * 119.99721 * 3.24504 * 13 11 10 15 15 Si 1.86795 * 120.00076 * 183.24729 * 13 11 10 16 16 H 1.48502 * 109.47367 * 0.02562 * 15 13 11 17 17 H 1.48502 * 109.47129 * 119.99878 * 15 13 11 18 18 H 1.48501 * 109.46971 * 240.00107 * 15 13 11 19 19 C 1.46501 * 120.00159 * 174.94034 * 10 8 7 20 20 C 1.53001 * 109.47240 * 93.96829 * 19 10 8 21 21 O 1.42897 * 109.47032 * 65.00260 * 20 19 10 22 22 C 1.42905 * 114.00186 * 179.97438 * 21 20 19 23 23 N 1.34426 * 108.44443 * 0.02562 * 7 6 5 24 24 N 1.28754 * 109.52907 * 359.74545 * 23 7 6 25 25 C 1.54032 * 113.92592 * 311.93266 * 3 2 1 26 26 O 1.44168 * 85.51939 * 91.65856 * 25 3 2 27 27 C 1.44173 * 93.34345 * 24.19222 * 26 25 3 28 28 H 1.09002 * 109.47238 * 179.97438 * 1 2 3 29 29 H 1.09003 * 109.47363 * 300.00186 * 1 2 3 30 30 H 1.09006 * 109.47417 * 60.00056 * 1 2 3 31 31 H 1.08990 * 109.47406 * 240.00198 * 2 1 3 32 32 H 1.08998 * 109.46885 * 119.99297 * 2 1 3 33 33 H 1.08996 * 109.46637 * 173.63017 * 4 3 2 34 34 H 1.09001 * 109.47061 * 53.63376 * 4 3 2 35 35 H 1.07992 * 126.59058 * 359.93963 * 6 5 4 36 36 H 0.96995 * 120.00115 * 179.97438 * 14 13 11 37 37 H 1.08999 * 109.47268 * 213.96945 * 19 10 8 38 38 H 1.09002 * 109.46918 * 333.97053 * 19 10 8 39 39 H 1.08997 * 109.47148 * 185.00525 * 20 19 10 40 40 H 1.09005 * 109.47356 * 305.00378 * 20 19 10 41 41 H 1.09006 * 109.46819 * 59.99785 * 22 21 20 42 42 H 1.08996 * 109.47467 * 180.02562 * 22 21 20 43 43 H 1.09003 * 109.47044 * 300.00038 * 22 21 20 44 44 H 1.08997 * 113.86303 * 205.80823 * 25 3 2 45 45 H 1.09004 * 113.86347 * 337.51044 * 25 3 2 46 46 H 1.08998 * 113.86876 * 221.65934 * 27 26 25 47 47 H 1.09002 * 113.86773 * 89.95257 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 3.5671 1.5367 0.0006 5 7 4.0880 1.0143 1.2663 6 6 4.9988 0.0314 1.4161 7 6 5.1897 -0.1296 2.7597 8 6 6.1033 -1.0998 3.3904 9 8 6.8352 -1.7834 2.7003 10 7 6.1273 -1.2294 4.7317 11 6 5.3805 -0.3894 5.5144 12 1 5.3937 0.6747 5.3298 13 6 4.6056 -0.9062 6.5460 14 7 4.6386 -2.1927 6.8113 15 14 3.5173 0.2280 7.5551 16 1 3.6588 1.6205 7.0589 17 1 2.1015 -0.2012 7.4268 18 1 3.9260 0.1663 8.9814 19 6 6.9523 -2.2686 5.3527 20 6 8.3145 -1.6819 5.7281 21 8 8.1418 -0.6839 6.7361 22 6 9.3602 -0.0697 7.1608 23 7 4.4027 0.7457 3.4090 24 7 3.7390 1.4437 2.5546 25 6 1.3611 2.3451 -1.0474 26 8 0.4264 2.6675 0.0018 27 6 1.3612 2.3422 1.0501 28 1 -0.3634 -1.0277 -0.0005 29 1 -0.3634 0.5139 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 1.8934 -0.5137 -0.8899 32 1 1.8933 -0.5137 0.8900 33 1 3.8668 2.5784 -0.1134 34 1 3.9676 0.9508 -0.8266 35 1 5.4837 -0.5226 0.6261 36 1 4.0981 -2.5534 7.5314 37 1 6.4562 -2.6385 6.2500 38 1 7.0917 -3.0901 4.6498 39 1 8.9592 -2.4744 6.1081 40 1 8.7721 -1.2327 4.8467 41 1 9.8399 0.4129 6.3092 42 1 9.1440 0.6751 7.9267 43 1 10.0263 -0.8290 7.5707 44 1 1.9738 3.1882 -1.3665 45 1 0.9182 1.7984 -1.8800 46 1 0.9185 1.7933 1.8811 47 1 1.9740 3.1844 1.3715 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597755681.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:38:02 Heat of formation + Delta-G solvation = 2.599304 kcal Electronic energy + Delta-G solvation = -30748.881267 eV Core-core repulsion = 26549.802857 eV Total energy + Delta-G solvation = -4199.078409 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -42.98610 -41.81931 -40.19346 -38.43791 -36.56225 -35.99230 -33.97075 -33.37838 -31.95134 -31.12030 -30.10843 -27.57007 -27.26560 -26.83041 -26.52341 -24.73114 -24.46400 -22.95964 -22.63574 -21.04797 -19.90827 -19.32706 -18.04206 -17.47016 -17.30473 -17.29436 -17.05036 -16.79083 -16.46295 -16.11744 -16.03013 -15.97260 -15.65863 -15.48020 -15.17165 -14.94154 -14.59077 -14.29980 -13.98727 -13.47011 -13.36361 -13.13185 -13.06535 -12.95887 -12.81994 -12.72307 -12.67394 -12.58022 -12.41458 -12.35498 -11.99813 -11.82202 -11.63729 -11.55736 -11.37079 -10.94569 -10.91174 -10.55592 -10.52651 -10.39660 -10.01140 -9.28061 -8.07688 -5.92229 0.40234 1.05180 1.33092 1.45698 1.47857 1.61199 2.39033 2.64451 2.71567 2.90194 3.05828 3.13844 3.30222 3.52238 3.56639 3.71029 3.95478 4.12133 4.19217 4.29680 4.32401 4.32809 4.39259 4.44782 4.50603 4.54802 4.58551 4.61639 4.62810 4.65595 4.69283 4.70977 4.81320 4.89082 4.95764 5.06239 5.11595 5.16088 5.19242 5.24415 5.36588 5.52107 5.70651 5.83504 6.12929 6.51665 6.63923 7.20453 7.37470 7.65398 8.03093 8.89400 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.014504 B = 0.003525 C = 0.003178 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1930.041536 B = 7941.406221 C = 8809.501115 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.099 4.099 3 C -0.136 4.136 4 C 0.121 3.879 5 N -0.348 5.348 6 C 0.090 3.910 7 C -0.095 4.095 8 C 0.532 3.468 9 O -0.628 6.628 10 N -0.426 5.426 11 C -0.279 4.279 12 H 0.088 0.912 13 C 0.010 3.990 14 N -0.904 5.904 15 Si 0.968 3.032 16 H -0.266 1.266 17 H -0.286 1.286 18 H -0.278 1.278 19 C 0.095 3.905 20 C 0.068 3.932 21 O -0.393 6.393 22 C 0.025 3.975 23 N -0.203 5.203 24 N -0.108 5.108 25 C 0.061 3.939 26 O -0.398 6.398 27 C 0.052 3.948 28 H 0.053 0.947 29 H 0.037 0.963 30 H 0.072 0.928 31 H 0.096 0.904 32 H 0.035 0.965 33 H 0.120 0.880 34 H 0.145 0.855 35 H 0.229 0.771 36 H 0.265 0.735 37 H 0.116 0.884 38 H 0.062 0.938 39 H 0.066 0.934 40 H 0.029 0.971 41 H 0.037 0.963 42 H 0.089 0.911 43 H 0.052 0.948 44 H 0.109 0.891 45 H 0.115 0.885 46 H 0.067 0.933 47 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.551 6.836 -15.645 17.143 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.136 4.136 3 C -0.137 4.137 4 C 0.002 3.998 5 N -0.134 5.134 6 C -0.068 4.068 7 C -0.235 4.235 8 C 0.320 3.680 9 O -0.516 6.516 10 N -0.142 5.142 11 C -0.408 4.408 12 H 0.106 0.894 13 C -0.190 4.190 14 N -0.544 5.544 15 Si 0.794 3.206 16 H -0.190 1.190 17 H -0.213 1.213 18 H -0.204 1.204 19 C -0.028 4.028 20 C -0.010 4.010 21 O -0.312 6.312 22 C -0.071 4.071 23 N -0.075 5.075 24 N -0.088 5.088 25 C -0.016 4.016 26 O -0.317 6.317 27 C -0.025 4.025 28 H 0.072 0.928 29 H 0.056 0.944 30 H 0.091 0.909 31 H 0.115 0.885 32 H 0.054 0.946 33 H 0.138 0.862 34 H 0.163 0.837 35 H 0.245 0.755 36 H 0.076 0.924 37 H 0.133 0.867 38 H 0.081 0.919 39 H 0.084 0.916 40 H 0.047 0.953 41 H 0.056 0.944 42 H 0.108 0.892 43 H 0.070 0.930 44 H 0.126 0.874 45 H 0.133 0.867 46 H 0.086 0.914 47 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -2.617 7.523 -14.942 16.932 hybrid contribution 0.490 -0.567 0.430 0.863 sum -2.127 6.956 -14.512 16.233 Atomic orbital electron populations 1.21731 0.94758 1.01194 1.02332 1.21258 0.96852 0.93197 1.02327 1.24047 0.93780 0.97875 0.98009 1.22542 0.93442 1.03255 0.80606 1.50596 1.28631 1.25062 1.09082 1.23561 0.92982 0.92203 0.98051 1.21470 1.06068 1.04126 0.91838 1.17622 0.83845 0.83673 0.82811 1.90567 1.46697 1.50780 1.63578 1.43411 1.38126 1.29337 1.03329 1.19476 1.20025 0.90194 1.11148 0.89417 1.25978 0.97509 0.96642 0.98896 1.69634 1.40319 1.12973 1.31519 0.85221 0.77953 0.79494 0.77885 1.18975 1.21281 1.20424 1.21860 0.90093 0.90275 1.00608 1.22774 0.97604 0.90796 0.89826 1.88136 1.30935 1.54993 1.57161 1.22859 0.87095 0.97769 0.99375 1.75152 1.03820 1.03573 1.24938 1.81828 1.21990 1.21074 0.83883 1.24199 0.89374 0.96509 0.91477 1.89685 1.33852 1.90495 1.17699 1.23880 0.89819 0.96981 0.91787 0.92803 0.94370 0.90887 0.88531 0.94592 0.86186 0.83686 0.75480 0.92449 0.86672 0.91946 0.91571 0.95313 0.94389 0.89220 0.92994 0.87352 0.86731 0.91440 0.89597 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.79 8.63 71.98 0.62 -2.17 16 2 C -0.10 -1.86 5.55 30.60 0.17 -1.69 16 3 C -0.14 -2.24 1.12 -51.48 -0.06 -2.30 16 4 C 0.12 1.75 5.93 86.38 0.51 2.26 16 5 N -0.35 -9.40 3.46 -347.03 -1.20 -10.60 16 6 C 0.09 2.81 11.28 83.86 0.95 3.75 16 7 C -0.10 -4.19 6.74 40.80 0.28 -3.92 16 8 C 0.53 27.05 7.62 86.67 0.66 27.71 16 9 O -0.63 -32.39 16.44 -4.09 -0.07 -32.46 16 10 N -0.43 -22.78 2.51 -639.22 -1.60 -24.38 16 11 C -0.28 -15.34 6.84 84.07 0.57 -14.77 16 12 H 0.09 5.00 6.43 -2.91 -0.02 4.98 16 13 C 0.01 0.55 5.40 84.94 0.46 1.01 16 14 N -0.90 -50.75 10.80 21.67 0.23 -50.52 16 15 Si 0.97 45.55 29.55 68.60 2.03 47.57 16 16 H -0.27 -12.42 7.11 99.48 0.71 -11.71 16 17 H -0.29 -13.41 7.11 99.48 0.71 -12.71 16 18 H -0.28 -12.65 7.11 99.48 0.71 -11.94 16 19 C 0.09 4.74 5.52 86.38 0.48 5.21 16 20 C 0.07 2.90 6.28 71.98 0.45 3.35 16 21 O -0.39 -17.50 9.99 -148.98 -1.49 -18.98 16 22 C 0.03 0.82 11.01 113.37 1.25 2.07 16 23 N -0.20 -9.26 9.27 -50.00 -0.46 -9.72 16 24 N -0.11 -4.02 12.48 37.02 0.46 -3.55 16 25 C 0.06 0.73 7.74 72.27 0.56 1.29 16 26 O -0.40 -8.49 10.86 -148.98 -1.62 -10.10 16 27 C 0.05 1.19 6.47 72.27 0.47 1.66 16 28 H 0.05 1.01 8.14 -2.39 -0.02 0.99 16 29 H 0.04 0.91 6.53 -2.39 -0.02 0.89 16 30 H 0.07 1.20 6.54 -2.38 -0.02 1.18 16 31 H 0.10 1.29 8.14 -2.39 -0.02 1.27 16 32 H 0.04 0.94 8.03 -2.39 -0.02 0.92 16 33 H 0.12 1.28 8.05 -2.39 -0.02 1.26 16 34 H 0.15 0.98 8.08 -2.39 -0.02 0.96 16 35 H 0.23 5.27 8.06 -2.91 -0.02 5.25 16 36 H 0.27 14.19 8.31 -92.71 -0.77 13.42 16 37 H 0.12 6.28 5.23 -2.39 -0.01 6.26 16 38 H 0.06 3.08 7.38 -2.39 -0.02 3.07 16 39 H 0.07 2.40 8.14 -2.39 -0.02 2.38 16 40 H 0.03 1.25 8.14 -2.38 -0.02 1.23 16 41 H 0.04 1.14 8.14 -2.38 -0.02 1.12 16 42 H 0.09 2.61 8.14 -2.39 -0.02 2.59 16 43 H 0.05 1.42 8.14 -2.39 -0.02 1.40 16 44 H 0.11 0.76 8.04 -2.39 -0.02 0.74 16 45 H 0.11 0.92 7.33 -2.39 -0.02 0.91 16 46 H 0.07 1.91 7.33 -2.39 -0.02 1.89 16 47 H 0.09 1.97 8.10 -2.39 -0.02 1.95 16 Total: -1.00 -75.58 383.23 4.62 -70.96 By element: Atomic # 1 Polarization: 17.33 SS G_CDS: 0.98 Total: 18.31 kcal Atomic # 6 Polarization: 16.11 SS G_CDS: 7.36 Total: 23.48 kcal Atomic # 7 Polarization: -96.20 SS G_CDS: -2.57 Total: -98.77 kcal Atomic # 8 Polarization: -58.37 SS G_CDS: -3.17 Total: -61.55 kcal Atomic # 14 Polarization: 45.55 SS G_CDS: 2.03 Total: 47.57 kcal Total: -75.58 4.62 -70.96 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597755681.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.559 kcal (2) G-P(sol) polarization free energy of solvation -75.585 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.026 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.625 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.960 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.599 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds