Wall clock time and date at job start Tue Mar 31 2020 21:40:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 N 1.31128 * 126.55336 * 2 1 4 4 C 1.34490 * 105.61698 * 180.12008 * 3 2 1 5 5 C 1.50697 * 126.29168 * 179.89768 * 4 3 2 6 6 H 1.09007 * 109.50533 * 14.62787 * 5 4 3 7 7 C 1.53094 * 109.54533 * 254.51916 * 5 4 3 8 8 O 1.43018 * 109.25808 * 183.18875 * 7 5 4 9 9 C 1.43021 * 113.73452 * 58.67406 * 8 7 5 10 10 C 1.53094 * 109.25896 * 301.32819 * 9 8 7 11 11 N 1.47011 * 109.25974 * 56.84664 * 10 9 8 12 12 C 1.46896 * 111.00147 * 177.60789 * 11 10 9 13 13 C 1.52996 * 109.47255 * 293.63572 * 12 11 10 14 14 C 1.50702 * 109.47159 * 179.97438 * 13 12 11 15 15 O 1.21283 * 120.00262 * 0.02562 * 14 13 12 16 16 N 1.34777 * 119.99928 * 179.72352 * 14 13 12 17 17 C 1.46506 * 120.00264 * 0.28128 * 16 14 13 18 18 C 1.46499 * 120.00199 * 180.27479 * 16 14 13 19 19 C 1.50697 * 109.46949 * 90.00203 * 18 16 14 20 20 H 1.08004 * 120.00186 * 0.02562 * 19 18 16 21 21 C 1.37881 * 120.00081 * 180.02562 * 19 18 16 22 22 N 1.31519 * 120.00096 * 0.02562 * 21 19 18 23 23 Si 1.86802 * 120.00103 * 180.02562 * 21 19 18 24 24 H 1.48500 * 109.46956 * 89.99765 * 23 21 19 25 25 H 1.48497 * 109.47226 * 210.00189 * 23 21 19 26 26 H 1.48501 * 109.47027 * 329.99834 * 23 21 19 27 27 N 1.29947 * 107.42334 * 359.63802 * 4 3 2 28 28 O 1.21300 * 110.24919 * 0.22905 * 27 4 3 29 29 H 1.08994 * 109.47705 * 180.25478 * 1 2 3 30 30 H 1.09002 * 109.47172 * 300.25638 * 1 2 3 31 31 H 1.08999 * 109.47053 * 60.25091 * 1 2 3 32 32 H 1.08991 * 109.51146 * 303.12847 * 7 5 4 33 33 H 1.09009 * 109.50548 * 63.26060 * 7 5 4 34 34 H 1.09001 * 109.50762 * 61.26287 * 9 8 7 35 35 H 1.09001 * 109.50382 * 181.34867 * 9 8 7 36 36 H 1.09000 * 109.50664 * 296.91501 * 10 9 8 37 37 H 1.08997 * 109.50671 * 176.78636 * 10 9 8 38 38 H 1.09004 * 109.47112 * 173.63565 * 12 11 10 39 39 H 1.09000 * 109.47386 * 53.63953 * 12 11 10 40 40 H 1.09004 * 109.47066 * 59.99965 * 13 12 11 41 41 H 1.08994 * 109.47405 * 299.99795 * 13 12 11 42 42 H 1.08998 * 109.46921 * 89.99095 * 17 16 14 43 43 H 1.08994 * 109.46996 * 209.99677 * 17 16 14 44 44 H 1.09001 * 109.46578 * 329.99540 * 17 16 14 45 45 H 1.09001 * 109.47567 * 210.00057 * 18 16 14 46 46 H 1.09005 * 109.47076 * 330.00563 * 18 16 14 47 47 H 0.96991 * 119.99957 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2880 1.0534 0.0000 4 6 3.5441 0.5728 -0.0027 5 6 4.8112 1.3885 -0.0060 6 1 4.5797 2.4216 0.2536 7 6 5.4471 1.3414 -1.3978 8 8 6.6862 2.0550 -1.3747 9 6 7.6284 1.5420 -0.4289 10 6 7.0147 1.5911 0.9727 11 7 5.7540 0.8349 0.9768 12 6 5.1598 0.8094 2.3200 13 6 6.0605 0.0070 3.2611 14 6 5.4512 -0.0186 4.6392 15 8 4.3997 0.5486 4.8480 16 7 6.0717 -0.6770 5.6382 17 6 7.3416 -1.3625 5.3859 18 6 5.4763 -0.7070 6.9764 19 6 4.5651 -1.9015 7.0941 20 1 4.4421 -2.5715 6.2560 21 6 3.8884 -2.1390 8.2717 22 7 4.0378 -1.3228 9.2921 23 14 2.7594 -3.6200 8.4178 24 1 3.5332 -4.7850 8.9172 25 1 1.6597 -3.3124 9.3671 26 1 2.1877 -3.9401 7.0851 27 7 3.4645 -0.7242 0.0036 28 8 2.3029 -1.0735 0.0053 29 1 -0.3634 -1.0276 0.0046 30 1 -0.3633 0.5178 0.8877 31 1 -0.3633 0.5099 -0.8922 32 1 5.6294 0.3045 -1.6798 33 1 4.7746 1.8030 -2.1210 34 1 7.8742 0.5109 -0.6827 35 1 8.5340 2.1483 -0.4519 36 1 6.8183 2.6274 1.2480 37 1 7.7070 1.1486 1.6889 38 1 4.1758 0.3426 2.2732 39 1 5.0609 1.8288 2.6930 40 1 7.0445 0.4738 3.3079 41 1 6.1593 -1.0123 2.8881 42 1 8.1679 -0.6760 5.5701 43 1 7.4285 -2.2223 6.0502 44 1 7.3731 -1.6993 4.3497 45 1 6.2663 -0.7777 7.7241 46 1 4.9024 0.2053 7.1393 47 1 3.5620 -1.4902 10.1206 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000611533653.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:40:16 Heat of formation + Delta-G solvation = 4.686352 kcal Electronic energy + Delta-G solvation = -30265.221520 eV Core-core repulsion = 26066.233612 eV Total energy + Delta-G solvation = -4198.987908 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -45.71866 -40.16239 -38.93322 -36.61664 -35.80557 -34.80756 -33.88835 -32.65974 -31.54276 -31.11194 -28.99386 -28.16383 -27.00580 -25.67968 -25.44810 -23.57583 -23.46631 -22.33729 -21.69596 -20.15538 -18.46744 -18.24017 -17.74569 -16.95829 -16.59378 -16.48156 -15.89522 -15.69854 -15.52345 -15.41286 -15.03159 -14.78314 -14.53221 -14.16313 -13.85202 -13.69309 -13.54320 -13.39677 -12.89408 -12.58922 -12.43763 -12.28698 -12.19233 -12.15133 -11.91571 -11.81271 -11.64383 -11.53284 -11.17807 -11.17258 -11.04045 -10.92601 -10.72016 -10.56877 -10.21243 -10.16234 -9.80935 -9.63453 -8.92758 -8.67778 -8.44344 -7.65480 -6.05038 -4.09787 1.05180 2.02558 2.71006 3.11279 3.29251 3.30548 3.35379 3.38569 3.44147 3.69590 3.94904 4.09229 4.43760 4.45720 4.61852 4.66998 4.81351 4.89064 4.95490 5.01738 5.04042 5.14643 5.17737 5.25682 5.28476 5.31302 5.32657 5.44657 5.50974 5.59938 5.60217 5.64066 5.72988 5.83342 5.90445 5.98522 6.03088 6.21645 6.60222 6.68507 6.75662 7.04443 7.42891 7.53223 7.91394 8.07607 8.22865 8.40305 8.89256 9.07943 9.55288 11.03097 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.010773 B = 0.003349 C = 0.002701 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2598.452272 B = 8357.984837 C =10364.932307 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 C 0.178 3.822 3 N -0.481 5.481 4 C 0.174 3.826 5 C 0.144 3.856 6 H 0.082 0.918 7 C 0.078 3.922 8 O -0.378 6.378 9 C 0.061 3.939 10 C 0.015 3.985 11 N -0.529 5.529 12 C 0.075 3.925 13 C -0.133 4.133 14 C 0.505 3.495 15 O -0.545 6.545 16 N -0.602 5.602 17 C 0.083 3.917 18 C 0.245 3.755 19 C -0.526 4.526 20 H 0.057 0.943 21 C 0.061 3.939 22 N -0.895 5.895 23 Si 0.898 3.102 24 H -0.280 1.280 25 H -0.285 1.285 26 H -0.274 1.274 27 N -0.352 5.352 28 O 0.081 5.919 29 H 0.097 0.903 30 H 0.105 0.895 31 H 0.102 0.898 32 H 0.066 0.934 33 H 0.102 0.898 34 H 0.064 0.936 35 H 0.103 0.897 36 H 0.049 0.951 37 H 0.097 0.903 38 H 0.076 0.924 39 H 0.047 0.953 40 H 0.086 0.914 41 H 0.096 0.904 42 H 0.044 0.956 43 H 0.074 0.926 44 H 0.058 0.942 45 H 0.032 0.968 46 H 0.043 0.957 47 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.545 4.184 -22.702 23.224 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.042 4.042 3 N -0.216 5.216 4 C -0.100 4.100 5 C 0.034 3.966 6 H 0.100 0.900 7 C 0.000 4.000 8 O -0.296 6.296 9 C -0.016 4.016 10 C -0.112 4.112 11 N -0.255 5.255 12 C -0.052 4.052 13 C -0.173 4.173 14 C 0.291 3.709 15 O -0.424 6.424 16 N -0.334 5.334 17 C -0.061 4.061 18 C 0.126 3.874 19 C -0.565 4.565 20 H 0.075 0.925 21 C -0.141 4.141 22 N -0.534 5.534 23 Si 0.726 3.274 24 H -0.206 1.206 25 H -0.210 1.210 26 H -0.199 1.199 27 N -0.057 5.057 28 O 0.020 5.980 29 H 0.116 0.884 30 H 0.123 0.877 31 H 0.121 0.879 32 H 0.085 0.915 33 H 0.120 0.880 34 H 0.082 0.918 35 H 0.121 0.879 36 H 0.068 0.932 37 H 0.115 0.885 38 H 0.095 0.905 39 H 0.066 0.934 40 H 0.104 0.896 41 H 0.114 0.886 42 H 0.062 0.938 43 H 0.092 0.908 44 H 0.077 0.923 45 H 0.050 0.950 46 H 0.061 0.939 47 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 2.900 4.105 -22.618 23.170 hybrid contribution -0.972 -0.405 0.850 1.353 sum 1.928 3.701 -21.768 22.164 Atomic orbital electron populations 1.20402 0.80181 1.05733 1.05675 1.28816 0.98969 0.80678 0.95778 1.71838 1.00020 1.29080 1.20615 1.25187 0.94265 0.88334 1.02174 1.20427 0.85445 0.95259 0.95512 0.89998 1.22603 0.85758 0.98024 0.93615 1.88022 1.24813 1.56955 1.59777 1.22768 0.91753 1.00196 0.86905 1.22918 0.92022 0.97268 0.99025 1.62175 1.03960 1.52726 1.06633 1.21817 0.97978 0.99753 0.85700 1.21613 0.99721 1.02690 0.93298 1.20238 0.85162 0.79588 0.85941 1.90668 1.22568 1.45737 1.83399 1.48153 1.22220 1.50585 1.12463 1.21645 0.85716 0.97469 1.01251 1.19284 0.93511 0.98389 0.76228 1.21438 1.26540 1.09942 0.98586 0.92512 1.24942 0.96695 0.96877 0.95613 1.69933 1.42962 1.37028 1.03505 0.86494 0.80436 0.82517 0.77983 1.20582 1.21038 1.19894 1.74707 0.96729 1.15351 1.18927 1.85355 1.11612 1.35842 1.65237 0.88400 0.87676 0.87927 0.91546 0.87994 0.91808 0.87912 0.93240 0.88471 0.90535 0.93429 0.89613 0.88568 0.93782 0.90755 0.92343 0.95010 0.93912 0.92713 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.36 10.51 36.01 0.38 0.01 16 2 C 0.18 2.00 8.51 -13.06 -0.11 1.89 16 3 N -0.48 -6.52 11.55 -9.87 -0.11 -6.63 16 4 C 0.17 2.44 5.33 -156.38 -0.83 1.60 16 5 C 0.14 1.81 2.53 -68.76 -0.17 1.64 16 6 H 0.08 1.06 8.14 -51.93 -0.42 0.64 16 7 C 0.08 0.83 6.28 37.21 0.23 1.06 16 8 O -0.38 -4.06 10.83 -35.23 -0.38 -4.45 16 9 C 0.06 0.53 7.01 37.21 0.26 0.79 16 10 C 0.02 0.16 5.44 -3.71 -0.02 0.14 16 11 N -0.53 -6.80 4.52 -227.74 -1.03 -7.83 16 12 C 0.08 1.19 4.07 -3.83 -0.02 1.17 16 13 C -0.13 -2.08 4.19 -27.88 -0.12 -2.19 16 14 C 0.50 10.85 7.67 -10.98 -0.08 10.76 16 15 O -0.55 -14.20 15.56 5.55 0.09 -14.11 16 16 N -0.60 -13.13 2.86 -182.95 -0.52 -13.65 16 17 C 0.08 1.34 10.25 59.85 0.61 1.96 16 18 C 0.25 6.57 5.16 -5.20 -0.03 6.54 16 19 C -0.53 -15.27 9.39 -34.44 -0.32 -15.59 16 20 H 0.06 1.65 7.81 -52.48 -0.41 1.24 16 21 C 0.06 1.76 5.46 -17.82 -0.10 1.66 16 22 N -0.90 -26.95 13.29 55.43 0.74 -26.21 16 23 Si 0.90 22.15 29.54 -169.99 -5.02 17.13 16 24 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 25 H -0.28 -6.93 7.11 56.52 0.40 -6.53 16 26 H -0.27 -6.76 7.11 56.52 0.40 -6.35 16 27 N -0.35 -5.21 12.02 30.89 0.37 -4.84 16 28 O 0.08 1.07 11.31 18.12 0.20 1.27 16 29 H 0.10 0.39 8.14 -51.93 -0.42 -0.03 16 30 H 0.10 0.60 8.14 -51.93 -0.42 0.18 16 31 H 0.10 0.40 8.14 -51.93 -0.42 -0.02 16 32 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 33 H 0.10 0.94 8.14 -51.92 -0.42 0.52 16 34 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 35 H 0.10 0.67 8.14 -51.93 -0.42 0.25 16 36 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 37 H 0.10 0.86 6.38 -51.93 -0.33 0.53 16 38 H 0.08 1.44 6.54 -51.93 -0.34 1.10 16 39 H 0.05 0.79 8.08 -51.93 -0.42 0.37 16 40 H 0.09 1.09 6.48 -51.93 -0.34 0.75 16 41 H 0.10 1.45 7.40 -51.93 -0.38 1.07 16 42 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 43 H 0.07 1.24 8.07 -51.93 -0.42 0.82 16 44 H 0.06 0.78 6.43 -51.93 -0.33 0.45 16 45 H 0.03 0.86 8.07 -51.93 -0.42 0.44 16 46 H 0.04 1.29 7.42 -51.93 -0.39 0.90 16 47 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 LS Contribution 386.99 15.07 5.83 5.83 Total: -1.00 -36.89 386.99 -7.30 -44.19 By element: Atomic # 1 Polarization: 5.00 SS G_CDS: -7.14 Total: -2.14 kcal Atomic # 6 Polarization: 11.76 SS G_CDS: -0.32 Total: 11.44 kcal Atomic # 7 Polarization: -58.60 SS G_CDS: -0.56 Total: -59.16 kcal Atomic # 8 Polarization: -17.19 SS G_CDS: -0.09 Total: -17.28 kcal Atomic # 14 Polarization: 22.15 SS G_CDS: -5.02 Total: 17.13 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -36.89 -7.30 -44.19 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000611533653.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.875 kcal (2) G-P(sol) polarization free energy of solvation -36.892 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.983 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.297 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.189 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.686 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds