Wall clock time and date at job start Tue Mar 31 2020 21:40:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 N 1.31128 * 126.55336 * 2 1 4 4 C 1.34490 * 105.61698 * 180.12008 * 3 2 1 5 5 C 1.50697 * 126.29168 * 179.89768 * 4 3 2 6 6 H 1.09007 * 109.50533 * 14.62787 * 5 4 3 7 7 C 1.53094 * 109.54533 * 254.51916 * 5 4 3 8 8 O 1.43018 * 109.25808 * 183.18875 * 7 5 4 9 9 C 1.43021 * 113.73452 * 58.67406 * 8 7 5 10 10 C 1.53094 * 109.25896 * 301.32819 * 9 8 7 11 11 N 1.47011 * 109.25974 * 56.84664 * 10 9 8 12 12 C 1.46896 * 111.00147 * 177.60789 * 11 10 9 13 13 C 1.52996 * 109.47255 * 293.63572 * 12 11 10 14 14 C 1.50702 * 109.47159 * 179.97438 * 13 12 11 15 15 O 1.21283 * 120.00262 * 0.02562 * 14 13 12 16 16 N 1.34777 * 119.99928 * 179.72352 * 14 13 12 17 17 C 1.46506 * 120.00264 * 0.28128 * 16 14 13 18 18 C 1.46499 * 120.00199 * 180.27479 * 16 14 13 19 19 C 1.50697 * 109.46949 * 90.00203 * 18 16 14 20 20 H 1.08004 * 120.00186 * 0.02562 * 19 18 16 21 21 C 1.37881 * 120.00081 * 180.02562 * 19 18 16 22 22 N 1.31519 * 120.00096 * 0.02562 * 21 19 18 23 23 Si 1.86802 * 120.00103 * 180.02562 * 21 19 18 24 24 H 1.48500 * 109.46956 * 89.99765 * 23 21 19 25 25 H 1.48497 * 109.47226 * 210.00189 * 23 21 19 26 26 H 1.48501 * 109.47027 * 329.99834 * 23 21 19 27 27 N 1.29947 * 107.42334 * 359.63802 * 4 3 2 28 28 O 1.21300 * 110.24919 * 0.22905 * 27 4 3 29 29 H 1.08994 * 109.47705 * 180.25478 * 1 2 3 30 30 H 1.09002 * 109.47172 * 300.25638 * 1 2 3 31 31 H 1.08999 * 109.47053 * 60.25091 * 1 2 3 32 32 H 1.08991 * 109.51146 * 303.12847 * 7 5 4 33 33 H 1.09009 * 109.50548 * 63.26060 * 7 5 4 34 34 H 1.09001 * 109.50762 * 61.26287 * 9 8 7 35 35 H 1.09001 * 109.50382 * 181.34867 * 9 8 7 36 36 H 1.09000 * 109.50664 * 296.91501 * 10 9 8 37 37 H 1.08997 * 109.50671 * 176.78636 * 10 9 8 38 38 H 1.09004 * 109.47112 * 173.63565 * 12 11 10 39 39 H 1.09000 * 109.47386 * 53.63953 * 12 11 10 40 40 H 1.09004 * 109.47066 * 59.99965 * 13 12 11 41 41 H 1.08994 * 109.47405 * 299.99795 * 13 12 11 42 42 H 1.08998 * 109.46921 * 89.99095 * 17 16 14 43 43 H 1.08994 * 109.46996 * 209.99677 * 17 16 14 44 44 H 1.09001 * 109.46578 * 329.99540 * 17 16 14 45 45 H 1.09001 * 109.47567 * 210.00057 * 18 16 14 46 46 H 1.09005 * 109.47076 * 330.00563 * 18 16 14 47 47 H 0.96991 * 119.99957 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2880 1.0534 0.0000 4 6 3.5441 0.5728 -0.0027 5 6 4.8112 1.3885 -0.0060 6 1 4.5797 2.4216 0.2536 7 6 5.4471 1.3414 -1.3978 8 8 6.6862 2.0550 -1.3747 9 6 7.6284 1.5420 -0.4289 10 6 7.0147 1.5911 0.9727 11 7 5.7540 0.8349 0.9768 12 6 5.1598 0.8094 2.3200 13 6 6.0605 0.0070 3.2611 14 6 5.4512 -0.0186 4.6392 15 8 4.3997 0.5486 4.8480 16 7 6.0717 -0.6770 5.6382 17 6 7.3416 -1.3625 5.3859 18 6 5.4763 -0.7070 6.9764 19 6 4.5651 -1.9015 7.0941 20 1 4.4421 -2.5715 6.2560 21 6 3.8884 -2.1390 8.2717 22 7 4.0378 -1.3228 9.2921 23 14 2.7594 -3.6200 8.4178 24 1 3.5332 -4.7850 8.9172 25 1 1.6597 -3.3124 9.3671 26 1 2.1877 -3.9401 7.0851 27 7 3.4645 -0.7242 0.0036 28 8 2.3029 -1.0735 0.0053 29 1 -0.3634 -1.0276 0.0046 30 1 -0.3633 0.5178 0.8877 31 1 -0.3633 0.5099 -0.8922 32 1 5.6294 0.3045 -1.6798 33 1 4.7746 1.8030 -2.1210 34 1 7.8742 0.5109 -0.6827 35 1 8.5340 2.1483 -0.4519 36 1 6.8183 2.6274 1.2480 37 1 7.7070 1.1486 1.6889 38 1 4.1758 0.3426 2.2732 39 1 5.0609 1.8288 2.6930 40 1 7.0445 0.4738 3.3079 41 1 6.1593 -1.0123 2.8881 42 1 8.1679 -0.6760 5.5701 43 1 7.4285 -2.2223 6.0502 44 1 7.3731 -1.6993 4.3497 45 1 6.2663 -0.7777 7.7241 46 1 4.9024 0.2053 7.1393 47 1 3.5620 -1.4902 10.1206 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000611533653.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:40:15 Heat of formation + Delta-G solvation = -25.693656 kcal Electronic energy + Delta-G solvation = -30266.538896 eV Core-core repulsion = 26066.233612 eV Total energy + Delta-G solvation = -4200.305284 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -46.70619 -41.20571 -40.49253 -37.58417 -36.87472 -36.57273 -34.86416 -34.70578 -32.68051 -32.09682 -29.94882 -29.72073 -28.23771 -27.26817 -26.35255 -25.25038 -24.51071 -23.35105 -23.04190 -21.07825 -20.03681 -19.30177 -18.77697 -18.71939 -18.18599 -17.42052 -17.22509 -17.10445 -16.85205 -16.43827 -16.26885 -16.04224 -15.78581 -15.46404 -15.02744 -14.77366 -14.31356 -14.22830 -14.12174 -14.03239 -13.75322 -13.62584 -13.50969 -13.46065 -13.20478 -13.03859 -12.96750 -12.81077 -12.61731 -12.52274 -12.44833 -12.25179 -12.19039 -12.06296 -11.75691 -11.66691 -11.07870 -10.74819 -10.68852 -10.67483 -9.70385 -9.48150 -8.26581 -6.41939 0.11738 1.04642 1.33256 1.36301 1.46755 1.73791 1.88679 2.07680 2.30562 2.36167 2.59251 2.91268 3.02665 3.07835 3.52939 3.63296 3.70971 3.81305 3.86252 4.01067 4.05659 4.23413 4.24404 4.31519 4.41600 4.49980 4.54060 4.56256 4.60095 4.63777 4.66240 4.73722 4.74692 4.83381 4.91221 4.92185 4.92944 4.99740 5.08613 5.17360 5.50985 5.54754 5.70131 5.78939 5.98740 6.01519 6.63927 6.71986 7.11081 7.22950 7.40387 8.80633 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.010773 B = 0.003349 C = 0.002701 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2598.452272 B = 8357.984837 C =10364.932307 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 C 0.186 3.814 3 N -0.512 5.512 4 C 0.168 3.832 5 C 0.142 3.858 6 H 0.073 0.927 7 C 0.088 3.912 8 O -0.387 6.387 9 C 0.061 3.939 10 C 0.011 3.989 11 N -0.526 5.526 12 C 0.088 3.912 13 C -0.112 4.112 14 C 0.494 3.506 15 O -0.603 6.603 16 N -0.609 5.609 17 C 0.077 3.923 18 C 0.259 3.741 19 C -0.546 4.546 20 H 0.050 0.950 21 C 0.008 3.992 22 N -0.928 5.928 23 Si 0.968 3.032 24 H -0.261 1.261 25 H -0.278 1.278 26 H -0.275 1.275 27 N -0.377 5.377 28 O 0.070 5.930 29 H 0.120 0.880 30 H 0.109 0.891 31 H 0.128 0.872 32 H 0.065 0.935 33 H 0.113 0.887 34 H 0.070 0.930 35 H 0.131 0.869 36 H 0.046 0.954 37 H 0.116 0.884 38 H 0.040 0.960 39 H 0.030 0.970 40 H 0.127 0.873 41 H 0.112 0.888 42 H 0.075 0.925 43 H 0.066 0.934 44 H 0.093 0.907 45 H 0.026 0.974 46 H -0.004 1.004 47 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.583 3.014 -24.329 24.776 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.033 4.033 3 N -0.246 5.246 4 C -0.106 4.106 5 C 0.032 3.968 6 H 0.090 0.910 7 C 0.010 3.990 8 O -0.305 6.305 9 C -0.015 4.015 10 C -0.116 4.116 11 N -0.252 5.252 12 C -0.041 4.041 13 C -0.152 4.152 14 C 0.283 3.717 15 O -0.486 6.486 16 N -0.340 5.340 17 C -0.065 4.065 18 C 0.138 3.862 19 C -0.585 4.585 20 H 0.068 0.932 21 C -0.191 4.191 22 N -0.567 5.567 23 Si 0.792 3.208 24 H -0.186 1.186 25 H -0.203 1.203 26 H -0.200 1.200 27 N -0.085 5.085 28 O 0.011 5.989 29 H 0.139 0.861 30 H 0.127 0.873 31 H 0.146 0.854 32 H 0.083 0.917 33 H 0.131 0.869 34 H 0.088 0.912 35 H 0.149 0.851 36 H 0.065 0.935 37 H 0.134 0.866 38 H 0.059 0.941 39 H 0.048 0.952 40 H 0.144 0.856 41 H 0.130 0.870 42 H 0.094 0.906 43 H 0.085 0.915 44 H 0.111 0.889 45 H 0.044 0.956 46 H 0.014 0.986 47 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 3.983 2.918 -24.270 24.768 hybrid contribution -1.309 0.020 1.367 1.893 sum 2.674 2.938 -22.904 23.245 Atomic orbital electron populations 1.20769 0.76533 1.07710 1.06919 1.29847 1.00561 0.79651 0.93272 1.71850 1.00331 1.30180 1.22279 1.25480 0.94951 0.88429 1.01718 1.20541 0.85299 0.94406 0.96569 0.90970 1.22535 0.85996 0.98091 0.92391 1.88018 1.24907 1.57280 1.60312 1.22962 0.91965 1.01254 0.85364 1.23120 0.90847 0.96925 1.00723 1.62194 1.04715 1.53586 1.04716 1.21531 0.96714 0.98315 0.87509 1.21510 1.00770 1.03941 0.88942 1.21272 0.84470 0.78208 0.87768 1.90636 1.25297 1.48067 1.84567 1.48193 1.23978 1.51096 1.10708 1.21973 0.83702 0.97569 1.03234 1.18756 0.92780 0.95579 0.79109 1.21689 1.27563 1.10542 0.98678 0.93177 1.25876 0.98114 0.99979 0.95137 1.70047 1.43829 1.38753 1.04083 0.85407 0.78401 0.79075 0.77896 1.18553 1.20335 1.19963 1.74655 0.97673 1.15767 1.20384 1.85304 1.11511 1.36428 1.65663 0.86101 0.87297 0.85385 0.91691 0.86949 0.91151 0.85118 0.93548 0.86556 0.94092 0.95180 0.85554 0.87031 0.90612 0.91534 0.88856 0.95605 0.98614 0.92289 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.64 10.51 71.24 0.75 0.11 16 2 C 0.19 4.18 8.51 88.38 0.75 4.93 16 3 N -0.51 -14.19 11.55 -303.22 -3.50 -17.69 16 4 C 0.17 4.80 5.33 138.46 0.74 5.54 16 5 C 0.14 3.57 2.53 44.18 0.11 3.68 16 6 H 0.07 1.92 8.14 -2.38 -0.02 1.90 16 7 C 0.09 1.78 6.28 72.01 0.45 2.24 16 8 O -0.39 -7.56 10.83 -148.98 -1.61 -9.18 16 9 C 0.06 0.89 7.01 72.01 0.50 1.39 16 10 C 0.01 0.19 5.44 86.31 0.47 0.66 16 11 N -0.53 -13.00 4.52 -874.42 -3.96 -16.96 16 12 C 0.09 2.79 4.07 86.30 0.35 3.14 16 13 C -0.11 -3.32 4.19 29.85 0.13 -3.19 16 14 C 0.49 21.47 7.67 87.66 0.67 22.14 16 15 O -0.60 -32.98 15.56 -3.04 -0.05 -33.03 16 16 N -0.61 -26.59 2.86 -851.12 -2.43 -29.02 16 17 C 0.08 2.30 10.25 127.77 1.31 3.61 16 18 C 0.26 14.40 5.16 85.63 0.44 14.84 16 19 C -0.55 -32.42 9.39 25.60 0.24 -32.18 16 20 H 0.05 2.97 7.81 -2.91 -0.02 2.94 16 21 C 0.01 0.47 5.46 84.66 0.46 0.93 16 22 N -0.93 -56.92 13.29 21.45 0.28 -56.64 16 23 Si 0.97 45.61 29.54 68.60 2.03 47.63 16 24 H -0.26 -11.45 7.11 99.48 0.71 -10.74 16 25 H -0.28 -12.72 7.11 99.48 0.71 -12.02 16 26 H -0.27 -12.87 7.11 99.48 0.71 -12.16 16 27 N -0.38 -11.34 12.02 -60.34 -0.73 -12.07 16 28 O 0.07 1.88 11.31 74.89 0.85 2.73 16 29 H 0.12 0.71 8.14 -2.39 -0.02 0.69 16 30 H 0.11 1.13 8.14 -2.39 -0.02 1.11 16 31 H 0.13 0.73 8.14 -2.39 -0.02 0.71 16 32 H 0.06 1.34 8.14 -2.39 -0.02 1.32 16 33 H 0.11 1.99 8.14 -2.38 -0.02 1.97 16 34 H 0.07 0.97 8.14 -2.39 -0.02 0.95 16 35 H 0.13 1.20 8.14 -2.39 -0.02 1.18 16 36 H 0.05 0.88 8.14 -2.39 -0.02 0.86 16 37 H 0.12 1.61 6.38 -2.39 -0.02 1.59 16 38 H 0.04 1.59 6.54 -2.38 -0.02 1.58 16 39 H 0.03 1.04 8.08 -2.39 -0.02 1.02 16 40 H 0.13 2.74 6.48 -2.38 -0.02 2.73 16 41 H 0.11 3.06 7.40 -2.39 -0.02 3.04 16 42 H 0.08 1.82 8.14 -2.39 -0.02 1.80 16 43 H 0.07 2.11 8.07 -2.39 -0.02 2.09 16 44 H 0.09 2.14 6.43 -2.39 -0.02 2.13 16 45 H 0.03 1.44 8.07 -2.39 -0.02 1.42 16 46 H 0.00 -0.27 7.42 -2.38 -0.02 -0.29 16 47 H 0.27 15.36 8.31 -92.72 -0.77 14.59 16 Total: -1.00 -85.22 386.99 -0.76 -85.98 By element: Atomic # 1 Polarization: 9.42 SS G_CDS: 0.98 Total: 10.40 kcal Atomic # 6 Polarization: 20.47 SS G_CDS: 7.38 Total: 27.85 kcal Atomic # 7 Polarization: -122.05 SS G_CDS: -10.33 Total: -132.38 kcal Atomic # 8 Polarization: -38.67 SS G_CDS: -0.81 Total: -39.48 kcal Atomic # 14 Polarization: 45.61 SS G_CDS: 2.03 Total: 47.63 kcal Total: -85.22 -0.76 -85.98 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000611533653.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.290 kcal (2) G-P(sol) polarization free energy of solvation -85.223 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.933 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.761 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.984 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.694 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds