Wall clock time and date at job start Tue Mar 31 2020 21:08:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42896 * 113.99579 * 2 1 4 4 C 1.53005 * 109.47050 * 180.02562 * 3 2 1 5 5 N 1.46495 * 109.46989 * 65.00056 * 4 3 2 6 6 C 1.46501 * 120.00129 * 273.81879 * 5 4 3 7 7 C 1.50690 * 109.47087 * 263.98799 * 6 5 4 8 8 H 1.07997 * 120.00632 * 359.97438 * 7 6 5 9 9 C 1.37885 * 119.99953 * 180.02562 * 7 6 5 10 10 N 1.31513 * 119.99454 * 0.02562 * 9 7 6 11 11 Si 1.86797 * 120.00057 * 180.02562 * 9 7 6 12 12 H 1.48497 * 109.47305 * 89.99760 * 11 9 7 13 13 H 1.48507 * 109.46889 * 209.99896 * 11 9 7 14 14 H 1.48498 * 109.47278 * 329.99509 * 11 9 7 15 15 C 1.34784 * 119.99806 * 93.82435 * 5 4 3 16 16 O 1.21363 * 120.00292 * 357.95431 * 15 5 4 17 17 C 1.49308 * 119.99781 * 177.95668 * 15 5 4 18 18 O 1.21390 * 119.99897 * 359.71405 * 17 15 5 19 19 N 1.34775 * 119.99781 * 179.71402 * 17 15 5 20 20 C 1.39200 * 119.99930 * 185.56597 * 19 17 15 21 21 C 1.36214 * 126.27301 * 123.55147 * 20 19 17 22 22 C 1.50704 * 126.06890 * 359.77262 * 21 20 19 23 23 C 1.39694 * 107.85902 * 180.02562 * 21 20 19 24 24 C 1.50692 * 125.77043 * 180.02562 * 23 21 20 25 25 N 1.30848 * 108.45924 * 0.02562 * 23 21 20 26 26 N 1.35852 * 126.27058 * 303.59864 * 20 19 17 27 27 C 1.46502 * 126.09839 * 359.95704 * 26 20 19 28 28 H 1.09003 * 109.47265 * 299.99130 * 1 2 3 29 29 H 1.08996 * 109.47650 * 60.00434 * 1 2 3 30 30 H 1.09008 * 109.46684 * 180.02562 * 1 2 3 31 31 H 1.08998 * 109.47234 * 60.00178 * 3 2 1 32 32 H 1.09005 * 109.47455 * 300.00226 * 3 2 1 33 33 H 1.09004 * 109.46879 * 304.99731 * 4 3 2 34 34 H 1.09007 * 109.46961 * 185.00424 * 4 3 2 35 35 H 1.08994 * 109.46672 * 23.99118 * 6 5 4 36 36 H 1.09001 * 109.46942 * 143.98904 * 6 5 4 37 37 H 0.97003 * 119.99550 * 180.02562 * 10 9 7 38 38 H 0.97000 * 120.00077 * 5.55914 * 19 17 15 39 39 H 1.09004 * 109.46866 * 90.00030 * 22 21 20 40 40 H 1.09003 * 109.46892 * 209.99656 * 22 21 20 41 41 H 1.08997 * 109.47007 * 329.99872 * 22 21 20 42 42 H 1.08997 * 109.47481 * 89.99452 * 24 23 21 43 43 H 1.08997 * 109.47470 * 209.99860 * 24 23 21 44 44 H 1.09004 * 109.47439 * 329.99742 * 24 23 21 45 45 H 1.08998 * 109.46842 * 93.99629 * 27 26 20 46 46 H 1.08998 * 109.47405 * 213.99794 * 27 26 20 47 47 H 1.08999 * 109.47253 * 333.99768 * 27 26 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0101 1.3055 0.0000 4 6 3.5354 1.1847 -0.0006 5 7 3.9756 0.5646 -1.2527 6 6 4.0250 -0.8950 -1.3695 7 6 5.4249 -1.3745 -1.0844 8 1 6.2003 -0.6634 -0.8411 9 6 5.7160 -2.7213 -1.1354 10 7 4.7720 -3.5872 -1.4332 11 14 7.4510 -3.3159 -0.7813 12 1 7.5926 -3.5936 0.6706 13 1 7.7153 -4.5582 -1.5510 14 1 8.4246 -2.2688 -1.1822 15 6 4.3352 1.3368 -2.2972 16 8 4.2591 2.5451 -2.2132 17 6 4.8272 0.7056 -3.5577 18 8 4.9083 -0.5028 -3.6399 19 7 5.1814 1.4776 -4.6042 20 6 5.5292 0.8892 -5.8169 21 6 4.9530 1.1350 -7.0264 22 6 3.8189 2.0915 -7.2910 23 6 5.5962 0.3388 -7.9771 24 6 5.2775 0.2934 -9.4492 25 7 6.5223 -0.3610 -7.3731 26 7 6.5049 -0.0360 -6.0107 27 6 7.3824 -0.5942 -4.9788 28 1 -0.3634 0.5137 0.8901 29 1 -0.3634 0.5137 -0.8900 30 1 -0.3633 -1.0278 0.0005 31 1 1.6885 1.8463 0.8900 32 1 1.6884 1.8464 -0.8900 33 1 3.8514 0.5683 0.8410 34 1 3.9784 2.1767 0.0890 35 1 3.3353 -1.3403 -0.6526 36 1 3.7390 -1.1885 -2.3795 37 1 4.9767 -4.5347 -1.4687 38 1 5.1938 2.4431 -4.5124 39 1 4.2218 3.0773 -7.5235 40 1 3.2295 1.7317 -8.1345 41 1 3.1852 2.1572 -6.4066 42 1 5.8798 1.0345 -9.9744 43 1 5.5016 -0.6994 -9.8391 44 1 4.2202 0.5123 -9.5990 45 1 6.9548 -1.5233 -4.6020 46 1 8.3650 -0.7935 -5.4064 47 1 7.4802 0.1190 -4.1603 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000615256105.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:08:51 Heat of formation + Delta-G solvation = -17.465359 kcal Electronic energy + Delta-G solvation = -31058.863367 eV Core-core repulsion = 26858.914889 eV Total energy + Delta-G solvation = -4199.948478 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.39519 -40.02169 -38.17033 -37.34476 -35.59329 -34.30403 -33.90638 -32.55776 -30.79062 -30.00460 -29.46589 -27.20802 -26.93873 -26.11123 -24.66480 -24.23354 -22.89094 -22.26238 -20.00936 -19.85887 -19.03631 -17.37769 -16.91380 -16.68947 -16.38604 -15.88033 -15.61118 -15.37563 -15.07572 -14.94676 -14.72360 -14.47398 -14.22533 -13.66581 -13.48499 -13.41809 -13.09595 -12.85319 -12.79060 -12.39437 -12.34803 -12.20784 -12.10442 -11.85168 -11.81792 -11.69876 -11.62592 -11.60086 -11.00076 -10.91570 -10.86971 -10.55115 -10.43858 -10.01901 -9.82954 -9.68292 -9.45261 -8.88058 -8.62878 -8.27607 -7.97295 -7.88156 -6.02056 -4.04945 1.76443 2.12030 2.46144 2.79018 3.03465 3.27038 3.34597 3.35359 3.75254 4.01102 4.09532 4.42865 4.63589 4.93244 5.14877 5.28320 5.29911 5.33933 5.39649 5.40744 5.52652 5.57015 5.57095 5.57358 5.59719 5.61254 5.78618 5.80565 5.89140 5.89914 6.01882 6.05656 6.10057 6.17650 6.19778 6.31118 6.66559 6.86501 7.11344 7.35586 7.39660 7.47258 7.55056 7.87482 7.93248 8.09310 8.19943 8.27871 8.57620 8.96087 9.56752 11.06569 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.009080 B = 0.004771 C = 0.003547 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3082.797065 B = 5867.909066 C = 7892.957818 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.374 6.374 3 C 0.048 3.952 4 C 0.116 3.884 5 N -0.547 5.547 6 C 0.227 3.773 7 C -0.519 4.519 8 H 0.052 0.948 9 C 0.071 3.929 10 N -0.885 5.885 11 Si 0.888 3.112 12 H -0.281 1.281 13 H -0.286 1.286 14 H -0.276 1.276 15 C 0.508 3.492 16 O -0.564 6.564 17 C 0.491 3.509 18 O -0.428 6.428 19 N -0.647 5.647 20 C 0.317 3.683 21 C -0.247 4.247 22 C -0.066 4.066 23 C 0.076 3.924 24 C -0.068 4.068 25 N -0.286 5.286 26 N -0.357 5.357 27 C 0.105 3.895 28 H 0.035 0.965 29 H 0.036 0.964 30 H 0.084 0.916 31 H 0.054 0.946 32 H 0.049 0.951 33 H 0.093 0.907 34 H 0.093 0.907 35 H 0.048 0.952 36 H 0.067 0.933 37 H 0.261 0.739 38 H 0.424 0.576 39 H 0.058 0.942 40 H 0.063 0.937 41 H 0.058 0.942 42 H 0.074 0.926 43 H 0.071 0.929 44 H 0.076 0.924 45 H 0.093 0.907 46 H 0.081 0.919 47 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.663 11.346 -6.582 13.618 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.292 6.292 3 C -0.030 4.030 4 C -0.007 4.007 5 N -0.277 5.277 6 C 0.108 3.892 7 C -0.558 4.558 8 H 0.070 0.930 9 C -0.132 4.132 10 N -0.523 5.523 11 Si 0.716 3.284 12 H -0.207 1.207 13 H -0.211 1.211 14 H -0.201 1.201 15 C 0.290 3.710 16 O -0.446 6.446 17 C 0.272 3.728 18 O -0.293 6.293 19 N -0.304 5.304 20 C 0.097 3.903 21 C -0.261 4.261 22 C -0.124 4.124 23 C -0.089 4.089 24 C -0.127 4.127 25 N -0.111 5.111 26 N -0.141 5.141 27 C -0.036 4.036 28 H 0.054 0.946 29 H 0.054 0.946 30 H 0.103 0.897 31 H 0.072 0.928 32 H 0.067 0.933 33 H 0.112 0.888 34 H 0.112 0.888 35 H 0.066 0.934 36 H 0.084 0.916 37 H 0.071 0.929 38 H 0.263 0.737 39 H 0.077 0.923 40 H 0.082 0.918 41 H 0.077 0.923 42 H 0.092 0.908 43 H 0.090 0.910 44 H 0.095 0.905 45 H 0.111 0.889 46 H 0.100 0.900 47 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -2.587 9.681 -6.523 11.957 hybrid contribution 0.274 0.675 0.664 0.985 sum -2.313 10.356 -5.859 12.121 Atomic orbital electron populations 1.22694 0.81932 1.02590 0.99177 1.88084 1.18873 1.27071 1.95204 1.22975 0.94678 0.85279 1.00055 1.21559 0.91716 0.99935 0.87491 1.48258 1.58413 1.10864 1.10133 1.20087 0.97838 0.70531 1.00711 1.21216 0.94759 0.92089 1.47757 0.93013 1.24788 0.96718 0.96572 0.95134 1.69928 1.32291 1.02108 1.48020 0.86677 0.85072 0.78370 0.78299 1.20690 1.21148 1.20099 1.19607 0.80087 0.86422 0.84869 1.90655 1.56991 1.13852 1.83070 1.20584 0.79944 0.87625 0.84640 1.91012 1.45482 1.12547 1.80306 1.42589 1.68395 1.11100 1.08355 1.17586 0.91790 0.94105 0.86843 1.19512 1.05842 1.09521 0.91236 1.19991 0.94430 0.96296 1.01727 1.21894 0.94835 0.95317 0.96828 1.20132 1.02033 1.02941 0.87605 1.77325 1.23334 1.23856 0.86557 1.48784 1.26402 1.32419 1.06489 1.21929 0.92940 1.01127 0.87571 0.94644 0.94580 0.89730 0.92765 0.93295 0.88826 0.88848 0.93384 0.91554 0.92880 0.73676 0.92329 0.91774 0.92273 0.90756 0.91019 0.90544 0.88875 0.89991 0.90032 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.43 11.01 101.05 1.11 1.54 16 2 O -0.37 -6.49 9.28 -35.23 -0.33 -6.82 16 3 C 0.05 0.73 6.28 37.16 0.23 0.96 16 4 C 0.12 1.99 5.85 -4.04 -0.02 1.97 16 5 N -0.55 -11.36 2.45 -175.62 -0.43 -11.79 16 6 C 0.23 5.61 4.51 -5.20 -0.02 5.59 16 7 C -0.52 -13.79 8.09 -34.44 -0.28 -14.07 16 8 H 0.05 1.38 7.81 -52.49 -0.41 0.97 16 9 C 0.07 1.94 5.46 -17.82 -0.10 1.84 16 10 N -0.89 -25.64 13.29 55.43 0.74 -24.90 16 11 Si 0.89 21.15 29.54 -169.99 -5.02 16.13 16 12 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 13 H -0.29 -6.84 7.11 56.52 0.40 -6.43 16 14 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 15 C 0.51 10.18 7.68 -11.65 -0.09 10.09 16 16 O -0.56 -10.97 16.02 5.49 0.09 -10.88 16 17 C 0.49 9.77 7.10 -11.65 -0.08 9.69 16 18 O -0.43 -10.00 10.19 5.46 0.06 -9.94 16 19 N -0.65 -10.71 5.20 -11.80 -0.06 -10.77 16 20 C 0.32 5.44 6.73 -152.85 -1.03 4.41 16 21 C -0.25 -3.75 6.12 -104.80 -0.64 -4.40 16 22 C -0.07 -0.77 10.13 36.01 0.36 -0.41 16 23 C 0.08 1.16 7.20 -82.47 -0.59 0.56 16 24 C -0.07 -0.72 10.25 36.00 0.37 -0.35 16 25 N -0.29 -5.07 12.56 33.64 0.42 -4.64 16 26 N -0.36 -6.47 3.97 -67.08 -0.27 -6.74 16 27 C 0.11 1.83 9.81 59.85 0.59 2.42 16 28 H 0.03 0.38 8.14 -51.93 -0.42 -0.04 16 29 H 0.04 0.43 8.14 -51.93 -0.42 0.01 16 30 H 0.08 1.04 8.14 -51.92 -0.42 0.62 16 31 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 32 H 0.05 0.76 8.14 -51.93 -0.42 0.33 16 33 H 0.09 1.62 8.10 -51.93 -0.42 1.20 16 34 H 0.09 1.46 7.34 -51.92 -0.38 1.08 16 35 H 0.05 1.28 6.90 -51.93 -0.36 0.92 16 36 H 0.07 1.82 5.58 -51.93 -0.29 1.53 16 37 H 0.26 7.25 8.31 -40.82 -0.34 6.91 16 38 H 0.42 5.99 8.30 -40.82 -0.34 5.66 16 39 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 40 H 0.06 0.64 7.23 -51.93 -0.38 0.26 16 41 H 0.06 0.72 8.14 -51.93 -0.42 0.29 16 42 H 0.07 0.65 8.14 -51.93 -0.42 0.22 16 43 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 44 H 0.08 0.66 7.23 -51.93 -0.38 0.29 16 45 H 0.09 1.86 7.63 -51.93 -0.40 1.46 16 46 H 0.08 1.21 8.14 -51.93 -0.42 0.78 16 47 H 0.08 1.39 7.67 -51.93 -0.40 0.99 16 LS Contribution 393.58 15.07 5.93 5.93 Total: -1.00 -32.89 393.58 -6.17 -39.06 By element: Atomic # 1 Polarization: 12.62 SS G_CDS: -7.11 Total: 5.51 kcal Atomic # 6 Polarization: 20.04 SS G_CDS: -0.19 Total: 19.85 kcal Atomic # 7 Polarization: -59.25 SS G_CDS: 0.40 Total: -58.85 kcal Atomic # 8 Polarization: -27.46 SS G_CDS: -0.18 Total: -27.64 kcal Atomic # 14 Polarization: 21.15 SS G_CDS: -5.02 Total: 16.13 kcal Total LS contribution 5.93 Total: 5.93 kcal Total: -32.89 -6.17 -39.06 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000615256105.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.597 kcal (2) G-P(sol) polarization free energy of solvation -32.890 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.292 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.173 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.063 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.465 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds