Wall clock time and date at job start Tue Mar 31 2020 21:32:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.30501 * 125.64954 * 2 1 4 4 C 1.34129 * 109.25713 * 180.02562 * 3 2 1 5 5 N 1.48025 * 125.99132 * 180.02562 * 4 3 2 6 6 O 1.21803 * 119.99715 * 0.02569 * 5 4 3 7 7 O 1.21792 * 120.00508 * 180.02562 * 5 4 3 8 8 C 1.34668 * 108.02001 * 359.73661 * 4 3 2 9 9 N 1.35049 * 125.65338 * 180.02562 * 2 1 3 10 10 C 1.46506 * 126.39636 * 359.97438 * 9 2 1 11 11 C 1.53001 * 109.46838 * 85.00485 * 10 9 2 12 12 C 1.50693 * 109.47058 * 180.02562 * 11 10 9 13 13 O 1.21287 * 120.00079 * 356.84833 * 12 11 10 14 14 N 1.34777 * 120.00294 * 176.57558 * 12 11 10 15 15 C 1.46494 * 120.00429 * 176.35185 * 14 12 11 16 16 C 1.50699 * 109.47210 * 89.99886 * 15 14 12 17 17 H 1.07995 * 120.00194 * 0.02562 * 16 15 14 18 18 C 1.37875 * 119.99783 * 179.97438 * 16 15 14 19 19 N 1.31516 * 120.00406 * 0.02562 * 18 16 15 20 20 Si 1.86805 * 120.00035 * 180.02562 * 18 16 15 21 21 H 1.48499 * 109.46741 * 0.02562 * 20 18 16 22 22 H 1.48497 * 109.47265 * 119.99893 * 20 18 16 23 23 H 1.48505 * 109.46997 * 240.00273 * 20 18 16 24 24 C 1.46507 * 119.99567 * 356.34983 * 14 12 11 25 25 C 1.53003 * 109.46948 * 97.47369 * 24 14 12 26 26 C 1.52999 * 109.46947 * 174.77064 * 25 24 14 27 27 C 1.52996 * 109.47028 * 294.77014 * 25 24 14 28 28 H 1.09002 * 109.46739 * 269.99307 * 1 2 3 29 29 H 1.08989 * 109.47550 * 29.99573 * 1 2 3 30 30 H 1.09003 * 109.46934 * 150.00136 * 1 2 3 31 31 H 1.08003 * 126.59227 * 180.26696 * 8 4 3 32 32 H 1.08998 * 109.46972 * 325.00624 * 10 9 2 33 33 H 1.08996 * 109.47181 * 205.00379 * 10 9 2 34 34 H 1.08999 * 109.46797 * 59.99975 * 11 10 9 35 35 H 1.09006 * 109.46626 * 300.00053 * 11 10 9 36 36 H 1.09001 * 109.47307 * 209.99989 * 15 14 12 37 37 H 1.09004 * 109.47174 * 329.99475 * 15 14 12 38 38 H 0.97000 * 120.00218 * 180.02562 * 19 18 16 39 39 H 1.08998 * 109.47076 * 217.47477 * 24 14 12 40 40 H 1.08993 * 109.47006 * 337.47413 * 24 14 12 41 41 H 1.09001 * 109.47315 * 54.77191 * 25 24 14 42 42 H 1.09001 * 109.47009 * 59.99940 * 26 25 24 43 43 H 1.09002 * 109.46926 * 179.97438 * 26 25 24 44 44 H 1.09000 * 109.47250 * 300.00005 * 26 25 24 45 45 H 1.09001 * 109.47020 * 174.56909 * 27 25 24 46 46 H 1.08996 * 109.47319 * 294.56829 * 27 25 24 47 47 H 1.09002 * 109.47355 * 54.57169 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2676 1.0604 0.0000 4 6 3.5543 0.6819 -0.0006 5 7 4.7269 1.5854 -0.0002 6 8 4.5654 2.7927 0.0011 7 8 5.8531 1.1217 -0.0013 8 6 3.5926 -0.6642 0.0050 9 7 2.2942 -1.0973 -0.0005 10 6 1.8426 -2.4911 -0.0006 11 6 1.5655 -2.9372 -1.4376 12 6 1.1004 -4.3706 -1.4377 13 8 1.0551 -4.9935 -0.3980 14 7 0.7297 -4.9588 -2.5923 15 6 0.3540 -6.3747 -2.6056 16 6 -1.1267 -6.5039 -2.3574 17 1 -1.7280 -5.6198 -2.2055 18 6 -1.7141 -7.7509 -2.3254 19 7 -0.9820 -8.8276 -2.5109 20 14 -3.5498 -7.9111 -2.0185 21 1 -4.1419 -6.5607 -1.8425 22 1 -4.1886 -8.5839 -3.1779 23 1 -3.7781 -8.7160 -0.7915 24 6 0.7022 -4.1820 -3.8342 25 6 1.9961 -4.4222 -4.6147 26 6 1.9131 -3.7160 -5.9694 27 6 3.1807 -3.8666 -3.8216 28 1 -0.3633 -0.0001 1.0277 29 1 -0.3634 0.8899 -0.5137 30 1 -0.3633 -0.8900 -0.5138 31 1 4.4777 -1.2831 0.0101 32 1 0.9300 -2.5774 0.5891 33 1 2.6168 -3.1238 0.4334 34 1 2.4781 -2.8509 -2.0272 35 1 0.7913 -2.3044 -1.8715 36 1 0.5988 -6.8065 -3.5760 37 1 0.9009 -6.9030 -1.8245 38 1 -1.3953 -9.7049 -2.4887 39 1 -0.1498 -4.4931 -4.4386 40 1 0.6121 -3.1218 -3.5977 41 1 2.1331 -5.4922 -4.7706 42 1 1.7761 -2.6459 -5.8135 43 1 2.8351 -3.8867 -6.5252 44 1 1.0692 -4.1118 -6.5344 45 1 4.1103 -4.1223 -4.3300 46 1 3.0927 -2.7826 -3.7487 47 1 3.1830 -4.2990 -2.8210 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000751373508.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:32:58 Heat of formation + Delta-G solvation = 15.248571 kcal Electronic energy + Delta-G solvation = -29956.667021 eV Core-core repulsion = 25758.137125 eV Total energy + Delta-G solvation = -4198.529896 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -43.28781 -41.84397 -39.73019 -36.68223 -36.61767 -35.48740 -33.87369 -32.63628 -32.47879 -31.21626 -28.71498 -27.91048 -27.35483 -26.36196 -25.72160 -24.53656 -22.60054 -21.99715 -20.72920 -20.47124 -19.19048 -18.60156 -18.54534 -17.76109 -17.36316 -16.68596 -16.26331 -16.14318 -15.76543 -15.47044 -14.89006 -14.57924 -14.38554 -14.29640 -13.83948 -13.57003 -13.35412 -13.15034 -12.92085 -12.77770 -12.57802 -12.38525 -12.15728 -11.98473 -11.71397 -11.58654 -11.51972 -11.38972 -11.23617 -11.10179 -11.04106 -10.92426 -10.82019 -10.73627 -10.69125 -10.46234 -10.28677 -9.77080 -9.41808 -9.27053 -8.58168 -7.91155 -6.19154 -4.24474 0.06207 0.97468 1.29350 2.01014 2.27606 3.01515 3.19055 3.27398 3.29639 3.58068 3.73731 3.97415 4.24735 4.31136 4.37952 4.40561 4.69711 4.81012 4.87456 4.91891 5.00912 5.04499 5.06633 5.14791 5.18982 5.23271 5.31723 5.43947 5.48314 5.51831 5.56951 5.65126 5.75411 5.85507 5.96362 6.09829 6.18649 6.23171 6.30548 6.34973 6.82297 6.93940 7.22369 7.30048 7.65902 7.75727 8.05629 8.12572 8.64617 8.82366 9.41199 10.89017 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.014577 B = 0.002788 C = 0.002544 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1920.309055 B =10040.846471 C =11004.558441 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 C 0.250 3.750 3 N -0.450 5.450 4 C 0.039 3.961 5 N 0.068 4.932 6 O -0.137 6.137 7 O -0.165 6.165 8 C 0.064 3.936 9 N -0.438 5.438 10 C 0.112 3.888 11 C -0.177 4.177 12 C 0.511 3.489 13 O -0.540 6.540 14 N -0.587 5.587 15 C 0.247 3.753 16 C -0.528 4.528 17 H 0.058 0.942 18 C 0.062 3.938 19 N -0.893 5.893 20 Si 0.898 3.102 21 H -0.273 1.273 22 H -0.283 1.283 23 H -0.282 1.282 24 C 0.113 3.887 25 C -0.117 4.117 26 C -0.143 4.143 27 C -0.151 4.151 28 H 0.093 0.907 29 H 0.100 0.900 30 H 0.088 0.912 31 H 0.206 0.794 32 H 0.115 0.885 33 H 0.115 0.885 34 H 0.110 0.890 35 H 0.096 0.904 36 H 0.034 0.966 37 H 0.043 0.957 38 H 0.264 0.736 39 H 0.084 0.916 40 H 0.065 0.935 41 H 0.080 0.920 42 H 0.052 0.948 43 H 0.054 0.946 44 H 0.058 0.942 45 H 0.055 0.945 46 H 0.051 0.949 47 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.996 13.954 -0.775 15.207 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.016 4.016 3 N -0.170 5.170 4 C -0.170 4.170 5 N 0.589 4.411 6 O -0.358 6.358 7 O -0.375 6.375 8 C -0.079 4.079 9 N -0.119 5.119 10 C -0.008 4.008 11 C -0.217 4.217 12 C 0.296 3.704 13 O -0.419 6.419 14 N -0.318 5.318 15 C 0.128 3.872 16 C -0.566 4.566 17 H 0.076 0.924 18 C -0.140 4.140 19 N -0.532 5.532 20 Si 0.725 3.275 21 H -0.198 1.198 22 H -0.209 1.209 23 H -0.208 1.208 24 C -0.011 4.011 25 C -0.136 4.136 26 C -0.201 4.201 27 C -0.208 4.208 28 H 0.112 0.888 29 H 0.119 0.881 30 H 0.107 0.893 31 H 0.223 0.777 32 H 0.133 0.867 33 H 0.133 0.867 34 H 0.128 0.872 35 H 0.114 0.886 36 H 0.052 0.948 37 H 0.061 0.939 38 H 0.074 0.926 39 H 0.102 0.898 40 H 0.084 0.916 41 H 0.099 0.901 42 H 0.071 0.929 43 H 0.073 0.927 44 H 0.077 0.923 45 H 0.074 0.926 46 H 0.070 0.930 47 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 5.101 13.608 -0.245 14.535 hybrid contribution -0.372 -0.749 -0.001 0.836 sum 4.730 12.859 -0.246 13.703 Atomic orbital electron populations 1.20442 0.82740 1.05399 1.04955 1.23542 0.96392 0.79381 1.02240 1.69725 0.98742 1.29157 1.19406 1.20560 0.87813 0.87454 1.21215 1.42251 1.00511 1.00885 0.97448 1.94578 1.92584 0.96259 1.52393 1.94557 1.07538 1.80657 1.54730 1.22403 0.89297 0.93822 1.02420 1.45948 1.05148 1.09491 1.51288 1.22030 1.04248 0.75782 0.98786 1.22480 1.05031 0.97400 0.96816 1.19775 0.78882 0.87188 0.84545 1.90723 1.54841 1.65414 1.30884 1.48214 1.63783 1.13728 1.06031 1.19313 0.95859 0.73787 0.98210 1.21401 0.93035 0.92620 1.49593 0.92419 1.24932 0.98490 0.95614 0.94995 1.69929 1.35692 0.98036 1.49529 0.86450 0.84890 0.78166 0.77947 1.19808 1.20908 1.20829 1.21607 0.97710 0.95189 0.86633 1.21556 0.95368 1.01560 0.95133 1.21764 1.01927 1.00061 0.96351 1.22045 0.98244 0.99914 1.00632 0.88831 0.88094 0.89337 0.77742 0.86673 0.86716 0.87188 0.88555 0.94816 0.93898 0.92645 0.89803 0.91615 0.90142 0.92931 0.92663 0.92271 0.92598 0.93020 0.92360 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.51 10.04 36.00 0.36 -0.15 16 2 C 0.25 2.48 7.90 -155.41 -1.23 1.25 16 3 N -0.45 -5.82 11.23 -7.88 -0.09 -5.91 16 4 C 0.04 0.50 8.02 -145.54 -1.17 -0.67 16 5 N 0.07 0.97 4.45 32.62 0.15 1.11 16 6 O -0.14 -2.13 19.24 -29.46 -0.57 -2.70 16 7 O -0.16 -2.25 19.02 -29.46 -0.56 -2.81 16 8 C 0.06 0.62 11.25 -16.56 -0.19 0.43 16 9 N -0.44 -4.00 2.75 -113.90 -0.31 -4.31 16 10 C 0.11 1.02 4.97 -4.04 -0.02 1.00 16 11 C -0.18 -1.84 4.44 -27.89 -0.12 -1.97 16 12 C 0.51 8.37 6.55 -10.99 -0.07 8.29 16 13 O -0.54 -11.13 15.60 5.55 0.09 -11.05 16 14 N -0.59 -10.38 2.22 -175.06 -0.39 -10.76 16 15 C 0.25 5.78 5.15 -5.20 -0.03 5.75 16 16 C -0.53 -13.73 9.39 -34.44 -0.32 -14.06 16 17 H 0.06 1.50 7.81 -52.49 -0.41 1.09 16 18 C 0.06 1.67 5.46 -17.82 -0.10 1.57 16 19 N -0.89 -25.10 13.29 55.43 0.74 -24.36 16 20 Si 0.90 20.60 29.54 -169.99 -5.02 15.58 16 21 H -0.27 -6.15 7.11 56.52 0.40 -5.75 16 22 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 23 H -0.28 -6.53 7.11 56.52 0.40 -6.12 16 24 C 0.11 1.52 4.89 -4.04 -0.02 1.50 16 25 C -0.12 -1.37 3.11 -90.62 -0.28 -1.65 16 26 C -0.14 -1.37 9.19 37.16 0.34 -1.03 16 27 C -0.15 -1.58 7.55 37.16 0.28 -1.30 16 28 H 0.09 0.52 8.14 -51.93 -0.42 0.09 16 29 H 0.10 0.60 8.14 -51.94 -0.42 0.18 16 30 H 0.09 0.51 7.36 -51.93 -0.38 0.13 16 31 H 0.21 1.37 8.06 -52.48 -0.42 0.94 16 32 H 0.12 1.04 7.90 -51.93 -0.41 0.63 16 33 H 0.11 1.02 8.06 -51.93 -0.42 0.60 16 34 H 0.11 1.03 4.23 -51.93 -0.22 0.81 16 35 H 0.10 0.87 6.64 -51.93 -0.34 0.53 16 36 H 0.03 0.81 7.87 -51.93 -0.41 0.40 16 37 H 0.04 1.15 7.48 -51.93 -0.39 0.76 16 38 H 0.26 7.02 8.31 -40.82 -0.34 6.68 16 39 H 0.08 1.22 8.12 -51.93 -0.42 0.80 16 40 H 0.07 0.71 6.09 -51.93 -0.32 0.39 16 41 H 0.08 1.11 7.94 -51.93 -0.41 0.70 16 42 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 43 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 44 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 45 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 46 H 0.05 0.46 7.17 -51.93 -0.37 0.09 16 47 H 0.06 0.69 5.63 -51.93 -0.29 0.39 16 LS Contribution 394.09 15.07 5.94 5.94 Total: -1.00 -33.08 394.09 -9.49 -42.56 By element: Atomic # 1 Polarization: 4.61 SS G_CDS: -6.89 Total: -2.28 kcal Atomic # 6 Polarization: 1.55 SS G_CDS: -2.56 Total: -1.01 kcal Atomic # 7 Polarization: -44.32 SS G_CDS: 0.09 Total: -44.23 kcal Atomic # 8 Polarization: -15.52 SS G_CDS: -1.04 Total: -16.56 kcal Atomic # 14 Polarization: 20.60 SS G_CDS: -5.02 Total: 15.58 kcal Total LS contribution 5.94 Total: 5.94 kcal Total: -33.08 -9.49 -42.56 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000751373508.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.812 kcal (2) G-P(sol) polarization free energy of solvation -33.077 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.734 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.486 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.563 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.249 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds