Wall clock time and date at job start Tue Mar 31 2020 21:32:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.30501 * 125.64954 * 2 1 4 4 C 1.34129 * 109.25713 * 180.02562 * 3 2 1 5 5 N 1.48025 * 125.99132 * 180.02562 * 4 3 2 6 6 O 1.21803 * 119.99715 * 0.02569 * 5 4 3 7 7 O 1.21792 * 120.00508 * 180.02562 * 5 4 3 8 8 C 1.34668 * 108.02001 * 359.73661 * 4 3 2 9 9 N 1.35049 * 125.65338 * 180.02562 * 2 1 3 10 10 C 1.46506 * 126.39636 * 359.97438 * 9 2 1 11 11 C 1.53001 * 109.46838 * 85.00485 * 10 9 2 12 12 C 1.50693 * 109.47058 * 180.02562 * 11 10 9 13 13 O 1.21287 * 120.00079 * 356.84833 * 12 11 10 14 14 N 1.34777 * 120.00294 * 176.57558 * 12 11 10 15 15 C 1.46494 * 120.00429 * 176.35185 * 14 12 11 16 16 C 1.50699 * 109.47210 * 89.99886 * 15 14 12 17 17 H 1.07995 * 120.00194 * 0.02562 * 16 15 14 18 18 C 1.37875 * 119.99783 * 179.97438 * 16 15 14 19 19 N 1.31516 * 120.00406 * 0.02562 * 18 16 15 20 20 Si 1.86805 * 120.00035 * 180.02562 * 18 16 15 21 21 H 1.48499 * 109.46741 * 0.02562 * 20 18 16 22 22 H 1.48497 * 109.47265 * 119.99893 * 20 18 16 23 23 H 1.48505 * 109.46997 * 240.00273 * 20 18 16 24 24 C 1.46507 * 119.99567 * 356.34983 * 14 12 11 25 25 C 1.53003 * 109.46948 * 97.47369 * 24 14 12 26 26 C 1.52999 * 109.46947 * 174.77064 * 25 24 14 27 27 C 1.52996 * 109.47028 * 294.77014 * 25 24 14 28 28 H 1.09002 * 109.46739 * 269.99307 * 1 2 3 29 29 H 1.08989 * 109.47550 * 29.99573 * 1 2 3 30 30 H 1.09003 * 109.46934 * 150.00136 * 1 2 3 31 31 H 1.08003 * 126.59227 * 180.26696 * 8 4 3 32 32 H 1.08998 * 109.46972 * 325.00624 * 10 9 2 33 33 H 1.08996 * 109.47181 * 205.00379 * 10 9 2 34 34 H 1.08999 * 109.46797 * 59.99975 * 11 10 9 35 35 H 1.09006 * 109.46626 * 300.00053 * 11 10 9 36 36 H 1.09001 * 109.47307 * 209.99989 * 15 14 12 37 37 H 1.09004 * 109.47174 * 329.99475 * 15 14 12 38 38 H 0.97000 * 120.00218 * 180.02562 * 19 18 16 39 39 H 1.08998 * 109.47076 * 217.47477 * 24 14 12 40 40 H 1.08993 * 109.47006 * 337.47413 * 24 14 12 41 41 H 1.09001 * 109.47315 * 54.77191 * 25 24 14 42 42 H 1.09001 * 109.47009 * 59.99940 * 26 25 24 43 43 H 1.09002 * 109.46926 * 179.97438 * 26 25 24 44 44 H 1.09000 * 109.47250 * 300.00005 * 26 25 24 45 45 H 1.09001 * 109.47020 * 174.56909 * 27 25 24 46 46 H 1.08996 * 109.47319 * 294.56829 * 27 25 24 47 47 H 1.09002 * 109.47355 * 54.57169 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2676 1.0604 0.0000 4 6 3.5543 0.6819 -0.0006 5 7 4.7269 1.5854 -0.0002 6 8 4.5654 2.7927 0.0011 7 8 5.8531 1.1217 -0.0013 8 6 3.5926 -0.6642 0.0050 9 7 2.2942 -1.0973 -0.0005 10 6 1.8426 -2.4911 -0.0006 11 6 1.5655 -2.9372 -1.4376 12 6 1.1004 -4.3706 -1.4377 13 8 1.0551 -4.9935 -0.3980 14 7 0.7297 -4.9588 -2.5923 15 6 0.3540 -6.3747 -2.6056 16 6 -1.1267 -6.5039 -2.3574 17 1 -1.7280 -5.6198 -2.2055 18 6 -1.7141 -7.7509 -2.3254 19 7 -0.9820 -8.8276 -2.5109 20 14 -3.5498 -7.9111 -2.0185 21 1 -4.1419 -6.5607 -1.8425 22 1 -4.1886 -8.5839 -3.1779 23 1 -3.7781 -8.7160 -0.7915 24 6 0.7022 -4.1820 -3.8342 25 6 1.9961 -4.4222 -4.6147 26 6 1.9131 -3.7160 -5.9694 27 6 3.1807 -3.8666 -3.8216 28 1 -0.3633 -0.0001 1.0277 29 1 -0.3634 0.8899 -0.5137 30 1 -0.3633 -0.8900 -0.5138 31 1 4.4777 -1.2831 0.0101 32 1 0.9300 -2.5774 0.5891 33 1 2.6168 -3.1238 0.4334 34 1 2.4781 -2.8509 -2.0272 35 1 0.7913 -2.3044 -1.8715 36 1 0.5988 -6.8065 -3.5760 37 1 0.9009 -6.9030 -1.8245 38 1 -1.3953 -9.7049 -2.4887 39 1 -0.1498 -4.4931 -4.4386 40 1 0.6121 -3.1218 -3.5977 41 1 2.1331 -5.4922 -4.7706 42 1 1.7761 -2.6459 -5.8135 43 1 2.8351 -3.8867 -6.5252 44 1 1.0692 -4.1118 -6.5344 45 1 4.1103 -4.1223 -4.3300 46 1 3.0927 -2.7826 -3.7487 47 1 3.1830 -4.2990 -2.8210 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000751373508.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:32:57 Heat of formation + Delta-G solvation = -2.223988 kcal Electronic energy + Delta-G solvation = -29957.424688 eV Core-core repulsion = 25758.137125 eV Total energy + Delta-G solvation = -4199.287563 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -44.11365 -42.84226 -41.02712 -37.84924 -37.66557 -36.41434 -35.42370 -34.12993 -33.33103 -32.22639 -29.62454 -29.43664 -28.21743 -27.27929 -26.86182 -25.76457 -24.11561 -22.89819 -21.52575 -21.47166 -20.11105 -19.83217 -19.55810 -18.77957 -18.60949 -18.36921 -17.33273 -17.12587 -16.88367 -16.78547 -16.12022 -15.67399 -15.47450 -15.17284 -14.65813 -14.60529 -14.51287 -14.06372 -14.03283 -13.78042 -13.58635 -13.31357 -13.28266 -13.00899 -12.90320 -12.81202 -12.78641 -12.56544 -12.54183 -12.43638 -12.32588 -12.20969 -12.04105 -11.82563 -11.65009 -11.62497 -11.59076 -11.31430 -10.67131 -10.64096 -10.20071 -9.43201 -8.22218 -6.36128 -0.93730 0.06796 0.49767 1.20743 1.37506 1.39403 1.41508 1.50335 1.75034 2.27851 2.43937 3.00697 3.08538 3.21495 3.47113 3.53978 3.61775 3.77349 3.88704 4.01563 4.16423 4.21839 4.26467 4.31464 4.49901 4.58248 4.62598 4.63723 4.70070 4.72438 4.76507 4.90601 4.99674 5.00454 5.02500 5.04618 5.22957 5.26164 5.28297 5.37838 5.46164 5.53549 5.57928 5.82261 6.06195 6.11516 6.64875 6.69053 6.78101 7.27665 7.42870 8.84833 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.014577 B = 0.002788 C = 0.002544 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1920.309055 B =10040.846471 C =11004.558441 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 C 0.259 3.741 3 N -0.489 5.489 4 C 0.009 3.991 5 N 0.070 4.930 6 O -0.196 6.196 7 O -0.146 6.146 8 C 0.091 3.909 9 N -0.432 5.432 10 C 0.119 3.881 11 C -0.159 4.159 12 C 0.508 3.492 13 O -0.589 6.589 14 N -0.594 5.594 15 C 0.265 3.735 16 C -0.536 4.536 17 H 0.057 0.943 18 C 0.008 3.992 19 N -0.930 5.930 20 Si 0.963 3.037 21 H -0.263 1.263 22 H -0.275 1.275 23 H -0.284 1.284 24 C 0.110 3.890 25 C -0.114 4.114 26 C -0.138 4.138 27 C -0.148 4.148 28 H 0.106 0.894 29 H 0.107 0.893 30 H 0.102 0.898 31 H 0.237 0.763 32 H 0.120 0.880 33 H 0.120 0.880 34 H 0.129 0.871 35 H 0.121 0.879 36 H 0.018 0.982 37 H -0.001 1.001 38 H 0.265 0.735 39 H 0.068 0.932 40 H 0.104 0.896 41 H 0.048 0.952 42 H 0.072 0.928 43 H 0.063 0.937 44 H 0.053 0.947 45 H 0.062 0.938 46 H 0.077 0.923 47 H 0.041 0.959 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.335 15.155 -1.227 16.113 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.006 4.006 3 N -0.210 5.210 4 C -0.200 4.200 5 N 0.586 4.414 6 O -0.403 6.403 7 O -0.364 6.364 8 C -0.054 4.054 9 N -0.112 5.112 10 C -0.002 4.002 11 C -0.199 4.199 12 C 0.296 3.704 13 O -0.470 6.470 14 N -0.324 5.324 15 C 0.143 3.857 16 C -0.575 4.575 17 H 0.075 0.925 18 C -0.191 4.191 19 N -0.570 5.570 20 Si 0.788 3.212 21 H -0.187 1.187 22 H -0.201 1.201 23 H -0.210 1.210 24 C -0.013 4.013 25 C -0.134 4.134 26 C -0.195 4.195 27 C -0.205 4.205 28 H 0.124 0.876 29 H 0.126 0.874 30 H 0.121 0.879 31 H 0.254 0.746 32 H 0.138 0.862 33 H 0.138 0.862 34 H 0.146 0.854 35 H 0.139 0.861 36 H 0.036 0.964 37 H 0.018 0.982 38 H 0.074 0.926 39 H 0.087 0.913 40 H 0.122 0.878 41 H 0.066 0.934 42 H 0.091 0.909 43 H 0.082 0.918 44 H 0.072 0.928 45 H 0.081 0.919 46 H 0.095 0.905 47 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges 4.407 14.968 -0.725 15.620 hybrid contribution -0.128 -1.257 0.136 1.271 sum 4.279 13.710 -0.589 14.374 Atomic orbital electron populations 1.20654 0.80536 1.06412 1.06133 1.24120 0.97409 0.78785 1.00331 1.69672 0.99303 1.30792 1.21193 1.20645 0.87366 0.88030 1.23932 1.42491 1.01092 1.00949 0.96911 1.94581 1.92870 0.97285 1.55546 1.94510 1.08302 1.80432 1.53115 1.22888 0.90324 0.92838 0.99301 1.45950 1.04907 1.09293 1.51058 1.21970 1.04813 0.75507 0.97864 1.22360 1.06326 0.92845 0.98392 1.20687 0.77432 0.89228 0.83080 1.90701 1.56581 1.67205 1.32509 1.48138 1.64013 1.11899 1.08348 1.18671 0.94176 0.77261 0.95555 1.21727 0.94284 0.92608 1.48857 0.92458 1.25812 1.03030 0.95419 0.94855 1.70050 1.37622 0.98541 1.50753 0.85433 0.79572 0.78465 0.77745 1.18676 1.20061 1.21026 1.21854 0.98131 0.96415 0.84856 1.21497 0.95160 1.00156 0.96551 1.21722 1.02220 1.00860 0.94726 1.22017 0.97770 1.01243 0.99420 0.87553 0.87431 0.87894 0.74641 0.86231 0.86189 0.85351 0.86063 0.96414 0.98240 0.92559 0.91334 0.87802 0.93365 0.90917 0.91841 0.92788 0.91862 0.90456 0.93961 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.79 10.04 71.24 0.72 -0.07 16 2 C 0.26 4.38 7.90 138.13 1.09 5.47 16 3 N -0.49 -11.84 11.23 -178.84 -2.01 -13.85 16 4 C 0.01 0.21 8.02 128.16 1.03 1.24 16 5 N 0.07 1.94 4.45 -50.71 -0.23 1.72 16 6 O -0.20 -6.27 19.24 18.88 0.36 -5.91 16 7 O -0.15 -3.79 19.02 18.90 0.36 -3.43 16 8 C 0.09 1.45 11.25 83.09 0.93 2.38 16 9 N -0.43 -6.30 2.75 -514.27 -1.41 -7.71 16 10 C 0.12 1.75 4.97 86.38 0.43 2.18 16 11 C -0.16 -2.73 4.44 29.85 0.13 -2.60 16 12 C 0.51 15.95 6.55 87.65 0.57 16.53 16 13 O -0.59 -24.23 15.60 -3.05 -0.05 -24.28 16 14 N -0.59 -20.79 2.22 -826.15 -1.83 -22.62 16 15 C 0.26 12.85 5.15 85.63 0.44 13.29 16 16 C -0.54 -28.32 9.39 25.60 0.24 -28.08 16 17 H 0.06 2.96 7.81 -2.91 -0.02 2.94 16 18 C 0.01 0.42 5.46 84.65 0.46 0.88 16 19 N -0.93 -53.63 13.29 21.45 0.28 -53.35 16 20 Si 0.96 42.26 29.54 68.60 2.03 44.28 16 21 H -0.26 -10.96 7.11 99.48 0.71 -10.26 16 22 H -0.28 -11.65 7.11 99.48 0.71 -10.94 16 23 H -0.28 -12.49 7.11 99.48 0.71 -11.79 16 24 C 0.11 2.77 4.89 86.38 0.42 3.19 16 25 C -0.11 -2.50 3.11 -10.79 -0.03 -2.53 16 26 C -0.14 -2.27 9.19 71.98 0.66 -1.61 16 27 C -0.15 -2.65 7.55 71.98 0.54 -2.10 16 28 H 0.11 0.83 8.14 -2.39 -0.02 0.82 16 29 H 0.11 0.97 8.14 -2.39 -0.02 0.95 16 30 H 0.10 0.75 7.36 -2.39 -0.02 0.73 16 31 H 0.24 2.10 8.06 -2.91 -0.02 2.08 16 32 H 0.12 1.76 7.90 -2.39 -0.02 1.74 16 33 H 0.12 1.74 8.06 -2.39 -0.02 1.72 16 34 H 0.13 1.81 4.23 -2.39 -0.01 1.80 16 35 H 0.12 1.55 6.64 -2.38 -0.02 1.54 16 36 H 0.02 0.91 7.87 -2.39 -0.02 0.89 16 37 H 0.00 -0.03 7.48 -2.38 -0.02 -0.05 16 38 H 0.27 14.43 8.31 -92.71 -0.77 13.66 16 39 H 0.07 1.94 8.12 -2.39 -0.02 1.92 16 40 H 0.10 1.81 6.09 -2.39 -0.01 1.80 16 41 H 0.05 1.36 7.94 -2.39 -0.02 1.34 16 42 H 0.07 0.93 8.14 -2.39 -0.02 0.91 16 43 H 0.06 0.96 8.14 -2.39 -0.02 0.94 16 44 H 0.05 0.95 8.14 -2.39 -0.02 0.93 16 45 H 0.06 1.06 8.14 -2.39 -0.02 1.04 16 46 H 0.08 1.00 7.17 -2.39 -0.02 0.98 16 47 H 0.04 0.90 5.63 -2.39 -0.01 0.88 16 Total: -1.00 -76.55 394.09 6.13 -70.42 By element: Atomic # 1 Polarization: 5.58 SS G_CDS: 0.99 Total: 6.57 kcal Atomic # 6 Polarization: 0.52 SS G_CDS: 7.64 Total: 8.16 kcal Atomic # 7 Polarization: -90.61 SS G_CDS: -5.20 Total: -95.81 kcal Atomic # 8 Polarization: -34.29 SS G_CDS: 0.68 Total: -33.62 kcal Atomic # 14 Polarization: 42.26 SS G_CDS: 2.03 Total: 44.28 kcal Total: -76.55 6.13 -70.42 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000751373508.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.194 kcal (2) G-P(sol) polarization free energy of solvation -76.551 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.356 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.132 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.418 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.224 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds