Wall clock time and date at job start Tue Mar 31 2020 21:12:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 N 1.29953 * 125.30658 * 2 1 4 4 O 1.41875 * 107.41575 * 180.02562 * 3 2 1 5 5 N 1.41878 * 106.38777 * 359.78222 * 4 3 2 6 6 C 1.29959 * 107.41341 * 0.36958 * 5 4 3 7 7 C 1.50700 * 125.30176 * 179.89667 * 6 5 4 8 8 C 1.50697 * 109.46617 * 269.68601 * 7 6 5 9 9 O 1.21283 * 120.00521 * 359.73030 * 8 7 6 10 10 N 1.34784 * 119.99774 * 180.02562 * 8 7 6 11 11 C 1.46499 * 119.99971 * 359.72768 * 10 8 7 12 12 C 1.50703 * 109.47219 * 89.99688 * 11 10 8 13 13 H 1.07996 * 119.99587 * 359.97438 * 12 11 10 14 14 C 1.37875 * 120.00012 * 180.02562 * 12 11 10 15 15 N 1.31514 * 120.00204 * 0.02562 * 14 12 11 16 16 Si 1.86802 * 119.99711 * 180.02562 * 14 12 11 17 17 H 1.48498 * 109.47162 * 90.00216 * 16 14 12 18 18 H 1.48504 * 109.46778 * 209.99667 * 16 14 12 19 19 H 1.48495 * 109.47398 * 329.99635 * 16 14 12 20 20 C 1.46499 * 119.99893 * 179.72962 * 10 8 7 21 21 C 1.52996 * 109.47198 * 90.00083 * 20 10 8 22 22 N 1.46902 * 109.46980 * 179.97438 * 21 20 10 23 23 C 1.47015 * 111.00009 * 293.63325 * 22 21 20 24 24 C 1.53100 * 109.25969 * 177.60615 * 23 22 21 25 25 O 1.43020 * 109.25371 * 56.84894 * 24 23 22 26 26 C 1.43015 * 113.74045 * 301.33009 * 25 24 23 27 27 C 1.47013 * 110.99990 * 170.00210 * 22 21 20 28 28 H 1.09002 * 109.47233 * 270.00226 * 1 2 3 29 29 H 1.09003 * 109.47056 * 29.99915 * 1 2 3 30 30 H 1.09000 * 109.47486 * 149.99834 * 1 2 3 31 31 H 1.09001 * 109.46798 * 149.69492 * 7 6 5 32 32 H 1.08993 * 109.47546 * 29.69044 * 7 6 5 33 33 H 1.08998 * 109.47416 * 209.99869 * 11 10 8 34 34 H 1.09008 * 109.47058 * 330.00468 * 11 10 8 35 35 H 0.97000 * 120.00290 * 180.02562 * 15 14 12 36 36 H 1.08997 * 109.46865 * 210.00034 * 20 10 8 37 37 H 1.08998 * 109.47058 * 329.99547 * 20 10 8 38 38 H 1.08997 * 109.47172 * 299.99762 * 21 20 10 39 39 H 1.08998 * 109.47554 * 59.99767 * 21 20 10 40 40 H 1.09006 * 109.50603 * 297.54506 * 23 22 21 41 41 H 1.09003 * 109.50663 * 57.67164 * 23 22 21 42 42 H 1.08994 * 109.50511 * 296.91476 * 24 23 22 43 43 H 1.08995 * 109.54235 * 176.80143 * 24 23 22 44 44 H 1.08996 * 109.50161 * 298.73680 * 26 25 24 45 45 H 1.09002 * 109.54009 * 178.63053 * 26 25 24 46 46 H 1.08999 * 109.50620 * 302.32609 * 27 22 21 47 47 H 1.08999 * 109.51226 * 62.41126 * 27 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2580 1.0605 0.0000 4 8 3.6082 0.6247 -0.0006 5 7 3.5710 -0.7936 0.0042 6 6 2.3212 -1.1499 -0.0007 7 6 1.8208 -2.5714 -0.0003 8 6 1.6530 -3.0451 -1.4211 9 8 1.9093 -2.3000 -2.3431 10 7 1.2124 -4.2949 -1.6671 11 6 0.9023 -5.1948 -0.5534 12 6 -0.5444 -5.0322 -0.1641 13 1 -1.1701 -4.3286 -0.6930 14 6 -1.0689 -5.7809 0.8681 15 7 -0.3065 -6.6366 1.5131 16 14 -2.8624 -5.5798 1.3502 17 1 -3.6945 -6.5298 0.5689 18 1 -3.0197 -5.8607 2.7999 19 1 -3.2987 -4.1893 1.0652 20 6 1.0436 -4.7534 -3.0482 21 6 2.3457 -5.3914 -3.5365 22 7 2.1762 -5.8517 -4.9212 23 6 1.2055 -6.9533 -4.9951 24 6 1.0150 -7.3612 -6.4584 25 8 2.2822 -7.7176 -7.0175 26 6 3.2516 -6.6676 -6.9627 27 6 3.4647 -6.2527 -5.5045 28 1 -0.3634 0.0000 1.0277 29 1 -0.3633 0.8900 -0.5138 30 1 -0.3634 -0.8899 -0.5138 31 1 0.8610 -2.6186 0.5141 32 1 2.5400 -3.2096 0.5130 33 1 1.0829 -6.2256 -0.8581 34 1 1.5373 -4.9510 0.2984 35 1 -0.6756 -7.1637 2.2390 36 1 0.2403 -5.4888 -3.0912 37 1 0.7937 -3.9047 -3.6848 38 1 3.1491 -4.6560 -3.4935 39 1 2.5956 -6.2401 -2.8999 40 1 1.5774 -7.8050 -4.4253 41 1 0.2516 -6.6263 -4.5813 42 1 0.5927 -6.5259 -7.0170 43 1 0.3396 -8.2149 -6.5140 44 1 2.8942 -5.8122 -7.5360 45 1 4.1940 -7.0191 -7.3827 46 1 4.1599 -5.4143 -5.4626 47 1 3.8731 -7.0926 -4.9425 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000845354396.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:12:53 Heat of formation + Delta-G solvation = 15.036179 kcal Electronic energy + Delta-G solvation = -30079.939408 eV Core-core repulsion = 25881.400302 eV Total energy + Delta-G solvation = -4198.539106 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.33703 -39.73938 -39.15586 -36.27182 -34.98945 -34.36580 -33.21486 -32.77227 -31.29934 -30.41180 -28.86306 -28.51682 -27.42197 -25.85440 -24.08179 -23.21947 -22.76176 -21.81632 -20.63706 -20.34054 -18.60072 -17.02593 -16.73756 -16.63205 -16.57499 -16.19465 -15.73384 -15.52329 -15.15601 -15.02964 -14.94273 -14.58415 -14.51108 -14.18243 -13.77966 -13.54559 -13.32886 -13.31014 -12.81202 -12.66979 -12.56468 -12.36606 -12.16777 -11.91631 -11.70272 -11.58416 -11.50447 -11.43164 -11.34767 -11.09332 -10.94002 -10.75321 -10.69199 -10.48537 -10.46582 -10.27357 -9.96921 -9.74578 -9.37479 -8.74090 -8.42107 -7.97794 -6.36141 -4.45651 0.71421 2.11404 2.83761 3.04141 3.10843 3.20039 3.20801 3.27228 3.48973 3.76736 3.97256 4.11849 4.19213 4.78995 4.79938 4.92906 4.95624 4.97326 5.07032 5.07624 5.10044 5.20322 5.32831 5.39289 5.40560 5.47075 5.47995 5.51819 5.56685 5.69274 5.71412 5.75818 5.85957 5.87337 5.89866 5.99167 6.14491 6.31239 6.48489 6.91897 6.93682 6.97793 7.05268 7.11122 7.27988 7.57380 7.83701 8.03894 8.55469 8.71573 9.23954 10.70441 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.007364 B = 0.004068 C = 0.002825 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3801.308752 B = 6881.142372 C = 9908.444314 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.094 4.094 2 C 0.093 3.907 3 N -0.288 5.288 4 O 0.016 5.984 5 N -0.271 5.271 6 C 0.108 3.892 7 C -0.079 4.079 8 C 0.524 3.476 9 O -0.563 6.563 10 N -0.589 5.589 11 C 0.233 3.767 12 C -0.545 4.545 13 H 0.064 0.936 14 C 0.068 3.932 15 N -0.888 5.888 16 Si 0.896 3.104 17 H -0.279 1.279 18 H -0.285 1.285 19 H -0.271 1.271 20 C 0.127 3.873 21 C 0.043 3.957 22 N -0.533 5.533 23 C 0.012 3.988 24 C 0.064 3.936 25 O -0.389 6.389 26 C 0.065 3.935 27 C 0.018 3.982 28 H 0.097 0.903 29 H 0.087 0.913 30 H 0.098 0.902 31 H 0.140 0.860 32 H 0.121 0.879 33 H 0.037 0.963 34 H 0.040 0.960 35 H 0.267 0.733 36 H 0.080 0.920 37 H 0.082 0.918 38 H 0.076 0.924 39 H 0.039 0.961 40 H 0.045 0.955 41 H 0.093 0.907 42 H 0.059 0.941 43 H 0.097 0.903 44 H 0.059 0.941 45 H 0.095 0.905 46 H 0.085 0.915 47 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.434 1.509 -7.672 7.950 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.090 4.090 3 N -0.035 5.035 4 O -0.123 6.123 5 N -0.015 5.015 6 C -0.076 4.076 7 C -0.119 4.119 8 C 0.310 3.690 9 O -0.443 6.443 10 N -0.319 5.319 11 C 0.114 3.886 12 C -0.584 4.584 13 H 0.082 0.918 14 C -0.136 4.136 15 N -0.525 5.525 16 Si 0.723 3.277 17 H -0.205 1.205 18 H -0.210 1.210 19 H -0.196 1.196 20 C 0.003 3.997 21 C -0.085 4.085 22 N -0.259 5.259 23 C -0.116 4.116 24 C -0.012 4.012 25 O -0.307 6.307 26 C -0.012 4.012 27 C -0.110 4.110 28 H 0.116 0.884 29 H 0.106 0.894 30 H 0.117 0.883 31 H 0.157 0.843 32 H 0.139 0.861 33 H 0.056 0.944 34 H 0.058 0.942 35 H 0.077 0.923 36 H 0.098 0.902 37 H 0.101 0.899 38 H 0.094 0.906 39 H 0.057 0.943 40 H 0.063 0.937 41 H 0.111 0.889 42 H 0.077 0.923 43 H 0.115 0.885 44 H 0.077 0.923 45 H 0.113 0.887 46 H 0.103 0.897 47 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges 2.626 2.788 -8.327 9.166 hybrid contribution -1.255 -1.017 1.154 1.985 sum 1.371 1.771 -7.173 7.514 Atomic orbital electron populations 1.20604 0.84254 1.05574 1.04784 1.24523 1.00314 0.88895 0.95220 1.79837 0.89163 1.19718 1.14747 1.93334 1.20238 1.13846 1.84904 1.79893 1.17620 0.90892 1.13065 1.24038 0.89707 0.98344 0.95498 1.20434 1.05826 0.87517 0.98161 1.19865 0.77372 0.82177 0.89561 1.90685 1.52481 1.55072 1.46062 1.48122 1.62937 1.12931 1.07914 1.19546 0.96616 0.89192 0.83271 1.21450 0.95351 1.24093 1.17476 0.91769 1.24945 0.98215 0.94647 0.95781 1.69910 1.36097 1.24167 1.22340 0.86520 0.84469 0.78829 0.77844 1.20466 1.21019 1.19571 1.21205 0.95922 0.99866 0.82695 1.22502 0.99803 0.99216 0.87002 1.62135 1.09174 1.34932 1.19635 1.22887 0.98012 0.93070 0.97643 1.22681 0.85473 1.00764 0.92331 1.87961 1.22435 1.38786 1.81562 1.22642 0.92629 0.90839 0.95073 1.22763 0.91853 1.00250 0.96149 0.88416 0.89378 0.88335 0.84253 0.86087 0.94446 0.94246 0.92294 0.90168 0.89947 0.90574 0.94290 0.93717 0.88874 0.92256 0.88477 0.92280 0.88669 0.89692 0.93999 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.06 10.05 36.00 0.36 -0.70 16 2 C 0.09 1.40 7.19 -82.38 -0.59 0.81 16 3 N -0.29 -4.81 12.98 33.74 0.44 -4.38 16 4 O 0.02 0.30 13.71 12.02 0.16 0.46 16 5 N -0.27 -4.90 12.98 33.74 0.44 -4.46 16 6 C 0.11 1.77 5.68 -82.38 -0.47 1.30 16 7 C -0.08 -1.25 4.42 -29.04 -0.13 -1.38 16 8 C 0.52 9.55 7.67 -10.98 -0.08 9.47 16 9 O -0.56 -11.59 15.61 5.56 0.09 -11.50 16 10 N -0.59 -10.71 2.46 -175.06 -0.43 -11.14 16 11 C 0.23 4.77 4.96 -5.19 -0.03 4.75 16 12 C -0.55 -12.24 9.27 -34.44 -0.32 -12.56 16 13 H 0.06 1.44 7.81 -52.49 -0.41 1.03 16 14 C 0.07 1.60 5.46 -17.82 -0.10 1.51 16 15 N -0.89 -22.23 13.29 55.43 0.74 -21.50 16 16 Si 0.90 18.44 29.54 -169.99 -5.02 13.42 16 17 H -0.28 -5.81 7.11 56.52 0.40 -5.41 16 18 H -0.28 -5.92 7.11 56.52 0.40 -5.52 16 19 H -0.27 -5.43 7.11 56.52 0.40 -5.03 16 20 C 0.13 2.10 5.34 -4.04 -0.02 2.08 16 21 C 0.04 0.66 5.28 -3.82 -0.02 0.64 16 22 N -0.53 -7.21 4.73 -234.31 -1.11 -8.32 16 23 C 0.01 0.15 5.44 -3.71 -0.02 0.13 16 24 C 0.06 0.71 7.01 37.21 0.26 0.97 16 25 O -0.39 -4.83 10.83 -35.23 -0.38 -5.22 16 26 C 0.07 0.69 7.01 37.21 0.26 0.95 16 27 C 0.02 0.22 5.64 -3.71 -0.02 0.20 16 28 H 0.10 0.88 8.14 -51.93 -0.42 0.46 16 29 H 0.09 0.87 8.14 -51.93 -0.42 0.45 16 30 H 0.10 1.13 7.77 -51.93 -0.40 0.73 16 31 H 0.14 2.05 7.63 -51.93 -0.40 1.66 16 32 H 0.12 1.83 7.39 -51.93 -0.38 1.44 16 33 H 0.04 0.83 8.07 -51.93 -0.42 0.41 16 34 H 0.04 0.82 6.44 -51.92 -0.33 0.49 16 35 H 0.27 6.44 8.31 -40.82 -0.34 6.10 16 36 H 0.08 1.31 6.44 -51.93 -0.33 0.98 16 37 H 0.08 1.44 7.42 -51.93 -0.39 1.05 16 38 H 0.08 1.24 8.04 -51.93 -0.42 0.82 16 39 H 0.04 0.61 8.12 -51.93 -0.42 0.19 16 40 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16 41 H 0.09 1.14 6.38 -51.93 -0.33 0.81 16 42 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 43 H 0.10 0.90 8.14 -51.93 -0.42 0.48 16 44 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 45 H 0.10 0.81 8.14 -51.93 -0.42 0.39 16 46 H 0.08 0.95 8.09 -51.93 -0.42 0.53 16 47 H 0.04 0.51 8.14 -51.93 -0.42 0.09 16 LS Contribution 390.93 15.07 5.89 5.89 Total: -1.00 -28.57 390.93 -7.27 -35.85 By element: Atomic # 1 Polarization: 9.88 SS G_CDS: -7.17 Total: 2.71 kcal Atomic # 6 Polarization: 9.09 SS G_CDS: -0.91 Total: 8.18 kcal Atomic # 7 Polarization: -49.86 SS G_CDS: 0.08 Total: -49.79 kcal Atomic # 8 Polarization: -16.13 SS G_CDS: -0.13 Total: -16.26 kcal Atomic # 14 Polarization: 18.44 SS G_CDS: -5.02 Total: 13.42 kcal Total LS contribution 5.89 Total: 5.89 kcal Total: -28.57 -7.27 -35.85 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000845354396.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.883 kcal (2) G-P(sol) polarization free energy of solvation -28.573 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.310 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.274 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.847 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.036 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds