Wall clock time and date at job start Tue Mar 31 2020 21:12:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 N 1.29953 * 125.30658 * 2 1 4 4 O 1.41875 * 107.41575 * 180.02562 * 3 2 1 5 5 N 1.41878 * 106.38777 * 359.78222 * 4 3 2 6 6 C 1.29959 * 107.41341 * 0.36958 * 5 4 3 7 7 C 1.50700 * 125.30176 * 179.89667 * 6 5 4 8 8 C 1.50697 * 109.46617 * 269.68601 * 7 6 5 9 9 O 1.21283 * 120.00521 * 359.73030 * 8 7 6 10 10 N 1.34784 * 119.99774 * 180.02562 * 8 7 6 11 11 C 1.46499 * 119.99971 * 359.72768 * 10 8 7 12 12 C 1.50703 * 109.47219 * 89.99688 * 11 10 8 13 13 H 1.07996 * 119.99587 * 359.97438 * 12 11 10 14 14 C 1.37875 * 120.00012 * 180.02562 * 12 11 10 15 15 N 1.31514 * 120.00204 * 0.02562 * 14 12 11 16 16 Si 1.86802 * 119.99711 * 180.02562 * 14 12 11 17 17 H 1.48498 * 109.47162 * 90.00216 * 16 14 12 18 18 H 1.48504 * 109.46778 * 209.99667 * 16 14 12 19 19 H 1.48495 * 109.47398 * 329.99635 * 16 14 12 20 20 C 1.46499 * 119.99893 * 179.72962 * 10 8 7 21 21 C 1.52996 * 109.47198 * 90.00083 * 20 10 8 22 22 N 1.46902 * 109.46980 * 179.97438 * 21 20 10 23 23 C 1.47015 * 111.00009 * 293.63325 * 22 21 20 24 24 C 1.53100 * 109.25969 * 177.60615 * 23 22 21 25 25 O 1.43020 * 109.25371 * 56.84894 * 24 23 22 26 26 C 1.43015 * 113.74045 * 301.33009 * 25 24 23 27 27 C 1.47013 * 110.99990 * 170.00210 * 22 21 20 28 28 H 1.09002 * 109.47233 * 270.00226 * 1 2 3 29 29 H 1.09003 * 109.47056 * 29.99915 * 1 2 3 30 30 H 1.09000 * 109.47486 * 149.99834 * 1 2 3 31 31 H 1.09001 * 109.46798 * 149.69492 * 7 6 5 32 32 H 1.08993 * 109.47546 * 29.69044 * 7 6 5 33 33 H 1.08998 * 109.47416 * 209.99869 * 11 10 8 34 34 H 1.09008 * 109.47058 * 330.00468 * 11 10 8 35 35 H 0.97000 * 120.00290 * 180.02562 * 15 14 12 36 36 H 1.08997 * 109.46865 * 210.00034 * 20 10 8 37 37 H 1.08998 * 109.47058 * 329.99547 * 20 10 8 38 38 H 1.08997 * 109.47172 * 299.99762 * 21 20 10 39 39 H 1.08998 * 109.47554 * 59.99767 * 21 20 10 40 40 H 1.09006 * 109.50603 * 297.54506 * 23 22 21 41 41 H 1.09003 * 109.50663 * 57.67164 * 23 22 21 42 42 H 1.08994 * 109.50511 * 296.91476 * 24 23 22 43 43 H 1.08995 * 109.54235 * 176.80143 * 24 23 22 44 44 H 1.08996 * 109.50161 * 298.73680 * 26 25 24 45 45 H 1.09002 * 109.54009 * 178.63053 * 26 25 24 46 46 H 1.08999 * 109.50620 * 302.32609 * 27 22 21 47 47 H 1.08999 * 109.51226 * 62.41126 * 27 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2580 1.0605 0.0000 4 8 3.6082 0.6247 -0.0006 5 7 3.5710 -0.7936 0.0042 6 6 2.3212 -1.1499 -0.0007 7 6 1.8208 -2.5714 -0.0003 8 6 1.6530 -3.0451 -1.4211 9 8 1.9093 -2.3000 -2.3431 10 7 1.2124 -4.2949 -1.6671 11 6 0.9023 -5.1948 -0.5534 12 6 -0.5444 -5.0322 -0.1641 13 1 -1.1701 -4.3286 -0.6930 14 6 -1.0689 -5.7809 0.8681 15 7 -0.3065 -6.6366 1.5131 16 14 -2.8624 -5.5798 1.3502 17 1 -3.6945 -6.5298 0.5689 18 1 -3.0197 -5.8607 2.7999 19 1 -3.2987 -4.1893 1.0652 20 6 1.0436 -4.7534 -3.0482 21 6 2.3457 -5.3914 -3.5365 22 7 2.1762 -5.8517 -4.9212 23 6 1.2055 -6.9533 -4.9951 24 6 1.0150 -7.3612 -6.4584 25 8 2.2822 -7.7176 -7.0175 26 6 3.2516 -6.6676 -6.9627 27 6 3.4647 -6.2527 -5.5045 28 1 -0.3634 0.0000 1.0277 29 1 -0.3633 0.8900 -0.5138 30 1 -0.3634 -0.8899 -0.5138 31 1 0.8610 -2.6186 0.5141 32 1 2.5400 -3.2096 0.5130 33 1 1.0829 -6.2256 -0.8581 34 1 1.5373 -4.9510 0.2984 35 1 -0.6756 -7.1637 2.2390 36 1 0.2403 -5.4888 -3.0912 37 1 0.7937 -3.9047 -3.6848 38 1 3.1491 -4.6560 -3.4935 39 1 2.5956 -6.2401 -2.8999 40 1 1.5774 -7.8050 -4.4253 41 1 0.2516 -6.6263 -4.5813 42 1 0.5927 -6.5259 -7.0170 43 1 0.3396 -8.2149 -6.5140 44 1 2.8942 -5.8122 -7.5360 45 1 4.1940 -7.0191 -7.3827 46 1 4.1599 -5.4143 -5.4626 47 1 3.8731 -7.0926 -4.9425 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000845354396.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:12:53 Heat of formation + Delta-G solvation = -3.865299 kcal Electronic energy + Delta-G solvation = -30080.759038 eV Core-core repulsion = 25881.400302 eV Total energy + Delta-G solvation = -4199.358735 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -42.62872 -40.99161 -40.36646 -37.50495 -36.39998 -35.63868 -34.54118 -34.43381 -32.25320 -31.70155 -30.15316 -29.60451 -28.99317 -27.05405 -25.04330 -24.91406 -24.02109 -23.03835 -21.86857 -21.36709 -20.06469 -18.60685 -18.21239 -18.03710 -17.69360 -17.16944 -17.04770 -16.82826 -16.37422 -16.26112 -16.10957 -15.96633 -15.68301 -15.32512 -15.02606 -14.78085 -14.56594 -14.32132 -14.25406 -14.03586 -13.85987 -13.57965 -13.34992 -13.21876 -13.08617 -12.89115 -12.84319 -12.66176 -12.53702 -12.46341 -12.32494 -12.14455 -11.98468 -11.85611 -11.67509 -11.65570 -11.44915 -10.91410 -10.71540 -10.53167 -9.62617 -9.43129 -8.15468 -6.29799 -0.57908 0.86688 1.49389 1.51169 1.53226 1.58589 1.62162 1.98868 2.16931 2.48092 2.76503 2.86790 2.97968 3.17498 3.53070 3.64984 3.83003 3.89953 3.92914 3.97957 4.08851 4.16730 4.18777 4.30920 4.35600 4.38750 4.45287 4.53250 4.57928 4.61479 4.70410 4.71527 4.77869 4.80161 4.83589 4.92547 4.97530 5.00818 5.08095 5.24885 5.63707 5.77710 5.82266 5.87515 5.90073 6.07853 6.15813 6.48617 6.82946 7.16921 7.43853 8.90319 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.007364 B = 0.004068 C = 0.002825 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3801.308752 B = 6881.142372 C = 9908.444314 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.095 4.095 2 C 0.101 3.899 3 N -0.300 5.300 4 O -0.009 6.009 5 N -0.292 5.292 6 C 0.109 3.891 7 C -0.073 4.073 8 C 0.525 3.475 9 O -0.586 6.586 10 N -0.588 5.588 11 C 0.247 3.753 12 C -0.542 4.542 13 H 0.066 0.934 14 C 0.027 3.973 15 N -0.920 5.920 16 Si 0.951 3.049 17 H -0.283 1.283 18 H -0.289 1.289 19 H -0.258 1.258 20 C 0.130 3.870 21 C 0.057 3.943 22 N -0.538 5.538 23 C 0.012 3.988 24 C 0.067 3.933 25 O -0.403 6.403 26 C 0.067 3.933 27 C 0.016 3.984 28 H 0.126 0.874 29 H 0.104 0.896 30 H 0.098 0.902 31 H 0.156 0.844 32 H 0.129 0.871 33 H 0.020 0.980 34 H 0.038 0.962 35 H 0.266 0.734 36 H 0.082 0.918 37 H 0.075 0.925 38 H 0.064 0.936 39 H 0.029 0.971 40 H 0.034 0.966 41 H 0.093 0.907 42 H 0.065 0.935 43 H 0.116 0.884 44 H 0.063 0.937 45 H 0.118 0.882 46 H 0.090 0.910 47 H 0.036 0.964 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.019 1.702 -8.132 8.308 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.081 4.081 3 N -0.049 5.049 4 O -0.144 6.144 5 N -0.037 5.037 6 C -0.075 4.075 7 C -0.113 4.113 8 C 0.313 3.687 9 O -0.468 6.468 10 N -0.318 5.318 11 C 0.127 3.873 12 C -0.580 4.580 13 H 0.084 0.916 14 C -0.174 4.174 15 N -0.559 5.559 16 Si 0.777 3.223 17 H -0.209 1.209 18 H -0.215 1.215 19 H -0.182 1.182 20 C 0.007 3.993 21 C -0.072 4.072 22 N -0.264 5.264 23 C -0.116 4.116 24 C -0.010 4.010 25 O -0.322 6.322 26 C -0.010 4.010 27 C -0.112 4.112 28 H 0.144 0.856 29 H 0.122 0.878 30 H 0.116 0.884 31 H 0.173 0.827 32 H 0.146 0.854 33 H 0.038 0.962 34 H 0.056 0.944 35 H 0.075 0.925 36 H 0.100 0.900 37 H 0.094 0.906 38 H 0.082 0.918 39 H 0.048 0.952 40 H 0.052 0.948 41 H 0.111 0.889 42 H 0.083 0.917 43 H 0.134 0.866 44 H 0.082 0.918 45 H 0.136 0.864 46 H 0.109 0.891 47 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges 1.237 2.995 -8.807 9.384 hybrid contribution -0.829 -1.109 1.248 1.865 sum 0.408 1.886 -7.558 7.801 Atomic orbital electron populations 1.20851 0.81269 1.06320 1.06797 1.25110 1.01945 0.87820 0.93270 1.79834 0.88548 1.20241 1.16269 1.93313 1.21572 1.13804 1.85721 1.79853 1.18711 0.91145 1.13982 1.24248 0.89636 0.98925 0.94657 1.20443 1.06816 0.87295 0.96752 1.20149 0.76624 0.81752 0.90221 1.90677 1.53494 1.55552 1.47101 1.48080 1.62822 1.12792 1.08075 1.19252 0.95891 0.88548 0.83658 1.21653 0.96045 1.23451 1.16896 0.91616 1.25573 1.01334 0.94487 0.95962 1.70006 1.37617 1.25276 1.23043 0.85656 0.80500 0.79184 0.76999 1.20922 1.21480 1.18175 1.21217 0.96722 0.99585 0.81789 1.22258 0.98488 0.98377 0.88068 1.62159 1.10327 1.35671 1.18245 1.22929 0.97580 0.92263 0.98841 1.22763 0.85453 1.01799 0.90996 1.87946 1.23048 1.39662 1.81562 1.22763 0.93387 0.90823 0.94040 1.22852 0.91104 1.00263 0.96948 0.85563 0.87774 0.88350 0.82664 0.85352 0.96237 0.94386 0.92477 0.90022 0.90620 0.91776 0.95236 0.94771 0.88890 0.91652 0.86644 0.91829 0.86414 0.89139 0.94565 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.86 10.05 71.23 0.72 -1.14 16 2 C 0.10 2.91 7.19 43.49 0.31 3.22 16 3 N -0.30 -9.79 12.98 -47.16 -0.61 -10.40 16 4 O -0.01 -0.33 13.71 70.17 0.96 0.63 16 5 N -0.29 -10.56 12.98 -47.15 -0.61 -11.17 16 6 C 0.11 3.50 5.68 43.49 0.25 3.75 16 7 C -0.07 -2.22 4.42 29.10 0.13 -2.09 16 8 C 0.53 18.76 7.67 87.65 0.67 19.43 16 9 O -0.59 -23.86 15.61 -3.04 -0.05 -23.91 16 10 N -0.59 -21.10 2.46 -826.15 -2.03 -23.13 16 11 C 0.25 9.99 4.96 85.63 0.43 10.41 16 12 C -0.54 -23.63 9.27 25.60 0.24 -23.40 16 13 H 0.07 2.82 7.81 -2.91 -0.02 2.80 16 14 C 0.03 1.25 5.46 84.65 0.46 1.71 16 15 N -0.92 -45.71 13.29 21.45 0.28 -45.42 16 16 Si 0.95 36.61 29.54 68.60 2.03 38.64 16 17 H -0.28 -11.05 7.11 99.48 0.71 -10.34 16 18 H -0.29 -11.28 7.11 99.48 0.71 -10.57 16 19 H -0.26 -9.31 7.11 99.48 0.71 -8.60 16 20 C 0.13 4.29 5.34 86.38 0.46 4.75 16 21 C 0.06 1.74 5.28 86.30 0.46 2.20 16 22 N -0.54 -14.30 4.73 -895.21 -4.23 -18.53 16 23 C 0.01 0.29 5.44 86.31 0.47 0.76 16 24 C 0.07 1.37 7.01 72.02 0.50 1.87 16 25 O -0.40 -9.37 10.83 -148.98 -1.61 -10.99 16 26 C 0.07 1.31 7.01 72.01 0.50 1.81 16 27 C 0.02 0.38 5.64 86.31 0.49 0.86 16 28 H 0.13 1.81 8.14 -2.39 -0.02 1.79 16 29 H 0.10 1.75 8.14 -2.39 -0.02 1.73 16 30 H 0.10 1.99 7.77 -2.39 -0.02 1.97 16 31 H 0.16 4.26 7.63 -2.39 -0.02 4.24 16 32 H 0.13 3.76 7.39 -2.39 -0.02 3.74 16 33 H 0.02 0.87 8.07 -2.39 -0.02 0.85 16 34 H 0.04 1.56 6.44 -2.38 -0.02 1.55 16 35 H 0.27 12.75 8.31 -92.71 -0.77 11.98 16 36 H 0.08 2.65 6.44 -2.39 -0.02 2.64 16 37 H 0.08 2.62 7.42 -2.39 -0.02 2.60 16 38 H 0.06 2.10 8.04 -2.39 -0.02 2.08 16 39 H 0.03 0.95 8.12 -2.39 -0.02 0.93 16 40 H 0.03 0.90 8.14 -2.38 -0.02 0.88 16 41 H 0.09 2.23 6.38 -2.39 -0.02 2.21 16 42 H 0.07 1.27 8.14 -2.39 -0.02 1.25 16 43 H 0.12 1.92 8.14 -2.39 -0.02 1.90 16 44 H 0.06 1.20 8.14 -2.39 -0.02 1.18 16 45 H 0.12 1.76 8.14 -2.39 -0.02 1.74 16 46 H 0.09 1.95 8.09 -2.39 -0.02 1.93 16 47 H 0.04 0.87 8.14 -2.39 -0.02 0.85 16 Total: -1.00 -60.00 390.93 1.19 -58.81 By element: Atomic # 1 Polarization: 20.36 SS G_CDS: 0.98 Total: 21.34 kcal Atomic # 6 Polarization: 18.06 SS G_CDS: 6.08 Total: 24.15 kcal Atomic # 7 Polarization: -101.46 SS G_CDS: -7.20 Total: -108.66 kcal Atomic # 8 Polarization: -33.57 SS G_CDS: -0.70 Total: -34.27 kcal Atomic # 14 Polarization: 36.61 SS G_CDS: 2.03 Total: 38.64 kcal Total: -60.00 1.19 -58.81 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000845354396.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.947 kcal (2) G-P(sol) polarization free energy of solvation -60.000 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.054 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.188 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.812 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.865 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds