Wall clock time and date at job start Tue Mar 31 2020 20:28:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.30169 * 126.80849 * 2 1 4 4 O 1.20901 * 111.74240 * 179.71987 * 3 2 1 5 5 C 1.34287 * 111.62733 * 0.49145 * 4 3 2 6 6 C 1.35858 * 106.36037 * 359.52270 * 5 4 3 7 7 N 1.40774 * 128.05953 * 180.22539 * 6 5 4 8 8 C 1.34774 * 120.00102 * 0.03053 * 7 6 5 9 9 O 1.21609 * 119.99766 * 359.97438 * 8 7 6 10 10 N 1.34779 * 120.00329 * 179.97438 * 8 7 6 11 11 C 1.46494 * 119.99713 * 359.97438 * 10 8 7 12 12 C 1.50695 * 109.47288 * 90.00115 * 11 10 8 13 13 H 1.08003 * 120.00366 * 359.97438 * 12 11 10 14 14 C 1.37880 * 120.00129 * 179.97438 * 12 11 10 15 15 N 1.31509 * 119.99862 * 0.02562 * 14 12 11 16 16 Si 1.86803 * 120.00155 * 179.97438 * 14 12 11 17 17 H 1.48500 * 109.46989 * 60.00026 * 16 14 12 18 18 H 1.48496 * 109.47125 * 180.02562 * 16 14 12 19 19 H 1.48498 * 109.47051 * 300.00371 * 16 14 12 20 20 C 1.46498 * 120.00172 * 180.02562 * 10 8 7 21 21 C 1.52992 * 109.47248 * 89.99753 * 20 10 8 22 22 N 1.46904 * 109.47518 * 179.97438 * 21 20 10 23 23 C 1.47014 * 110.99978 * 293.63995 * 22 21 20 24 24 C 1.53093 * 109.25962 * 177.60469 * 23 22 21 25 25 O 1.43013 * 109.25805 * 56.84223 * 24 23 22 26 26 C 1.43011 * 113.74345 * 301.33421 * 25 24 23 27 27 C 1.47012 * 111.00210 * 170.00036 * 22 21 20 28 28 H 1.09002 * 109.47476 * 269.97453 * 1 2 3 29 29 H 1.08993 * 109.47501 * 29.97656 * 1 2 3 30 30 H 1.09003 * 109.47079 * 149.98063 * 1 2 3 31 31 H 1.08002 * 126.82301 * 179.79277 * 5 4 3 32 32 H 0.97001 * 120.00190 * 180.02562 * 7 6 5 33 33 H 1.08995 * 109.47208 * 210.00213 * 11 10 8 34 34 H 1.09000 * 109.47323 * 329.99625 * 11 10 8 35 35 H 0.97002 * 120.00022 * 179.97438 * 15 14 12 36 36 H 1.08999 * 109.47144 * 210.00194 * 20 10 8 37 37 H 1.09009 * 109.46983 * 329.99820 * 20 10 8 38 38 H 1.09008 * 109.47199 * 300.00135 * 21 20 10 39 39 H 1.09002 * 109.47157 * 59.99730 * 21 20 10 40 40 H 1.09003 * 109.50419 * 297.53663 * 23 22 21 41 41 H 1.08998 * 109.50641 * 57.66708 * 23 22 21 42 42 H 1.09006 * 109.50286 * 296.91183 * 24 23 22 43 43 H 1.08993 * 109.54413 * 176.80673 * 24 23 22 44 44 H 1.09008 * 109.50189 * 298.73339 * 26 25 24 45 45 H 1.09004 * 109.54627 * 178.62799 * 26 25 24 46 46 H 1.09006 * 109.50487 * 302.32612 * 27 22 21 47 47 H 1.08993 * 109.50534 * 62.41667 * 27 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2869 1.0422 0.0000 4 8 3.4543 0.7279 0.0055 5 6 3.6078 -0.6061 -0.0007 6 6 2.3565 -1.1353 -0.0004 7 7 1.9890 -2.4942 -0.0012 8 6 2.9397 -3.4495 -0.0019 9 8 4.1151 -3.1375 -0.0023 10 7 2.5878 -4.7505 -0.0022 11 6 1.1719 -5.1263 -0.0012 12 6 0.6852 -5.2546 -1.4216 13 1 1.3627 -5.0738 -2.2430 14 6 -0.6251 -5.6027 -1.6726 15 7 -1.4503 -5.8224 -0.6724 16 14 -1.2287 -5.7610 -3.4333 17 1 -0.4394 -6.8049 -4.1351 18 1 -2.6639 -6.1421 -3.4322 19 1 -1.0625 -4.4614 -4.1322 20 6 3.6213 -5.7889 -0.0024 21 6 3.9811 -6.1506 1.4400 22 7 5.0169 -7.1922 1.4399 23 6 4.4969 -8.4524 0.8895 24 6 5.6221 -9.4898 0.8525 25 8 6.1563 -9.6534 2.1690 26 6 6.6722 -8.4458 2.7353 27 6 5.5575 -7.3979 2.7914 28 1 -0.3634 -0.0005 1.0277 29 1 -0.3634 0.8901 -0.5134 30 1 -0.3633 -0.8898 -0.5141 31 1 4.5407 -1.1504 -0.0010 32 1 1.0514 -2.7431 -0.0012 33 1 1.0494 -6.0799 0.5124 34 1 0.5928 -4.3596 0.5135 35 1 -2.3722 -6.0669 -0.8489 36 1 3.2468 -6.6741 -0.5164 37 1 4.5084 -5.4184 -0.5162 38 1 4.3556 -5.2653 1.9540 39 1 3.0939 -6.5210 1.9538 40 1 3.6858 -8.8175 1.5197 41 1 4.1252 -8.2823 -0.1209 42 1 6.4094 -9.1488 0.1801 43 1 5.2283 -10.4424 0.4984 44 1 7.4901 -8.0746 2.1176 45 1 7.0377 -8.6427 3.7432 46 1 5.9602 -6.4580 3.1692 47 1 4.7634 -7.7453 3.4521 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000888743173.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:28:08 Heat of formation + Delta-G solvation = 0.917446 kcal Electronic energy + Delta-G solvation = -30147.500042 eV Core-core repulsion = 25948.348701 eV Total energy + Delta-G solvation = -4199.151340 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -44.59195 -39.99222 -39.45109 -36.51236 -35.37996 -34.99272 -33.27072 -32.76757 -31.29233 -30.65060 -29.47762 -28.41826 -27.43379 -25.98825 -24.07525 -23.42272 -22.93428 -21.60604 -21.39293 -20.36018 -19.06743 -18.08680 -17.31084 -17.04939 -16.69748 -16.58786 -16.23346 -16.14277 -15.21723 -15.09714 -15.00228 -14.90837 -14.64200 -14.27093 -13.83785 -13.53247 -13.33610 -13.22746 -12.94266 -12.76321 -12.63689 -12.36219 -12.27598 -12.09509 -11.70941 -11.57161 -11.43607 -11.10463 -11.05874 -11.03013 -10.91540 -10.74014 -10.48679 -10.28015 -9.98164 -9.74372 -9.68519 -9.51430 -8.74143 -8.42239 -8.25388 -7.73329 -6.35582 -4.45064 1.79310 2.41735 2.82152 3.14188 3.20083 3.23151 3.61644 3.74149 3.79408 3.95537 4.17916 4.33751 4.59789 4.71420 4.81377 4.95391 4.97619 4.97887 5.08282 5.21056 5.29725 5.37575 5.48397 5.50506 5.57501 5.60935 5.66507 5.71937 5.77119 5.78853 5.88061 5.90308 6.09392 6.14585 6.19031 6.34618 6.47798 6.86543 6.88664 6.93835 6.98025 7.05951 7.12413 7.52726 7.59220 7.83490 8.30769 8.51492 8.64696 8.97845 9.25204 10.70434 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.007938 B = 0.003909 C = 0.002769 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3526.346779 B = 7161.968526 C =10111.125658 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 C -0.001 4.001 3 N -0.361 5.361 4 O 0.093 5.907 5 C -0.088 4.088 6 C 0.063 3.937 7 N -0.644 5.644 8 C 0.711 3.289 9 O -0.602 6.602 10 N -0.605 5.605 11 C 0.239 3.761 12 C -0.546 4.546 13 H 0.063 0.937 14 C 0.068 3.932 15 N -0.889 5.889 16 Si 0.898 3.102 17 H -0.275 1.275 18 H -0.285 1.285 19 H -0.275 1.275 20 C 0.144 3.856 21 C 0.043 3.957 22 N -0.532 5.532 23 C 0.012 3.988 24 C 0.064 3.936 25 O -0.389 6.389 26 C 0.065 3.935 27 C 0.019 3.981 28 H 0.079 0.921 29 H 0.077 0.923 30 H 0.083 0.917 31 H 0.235 0.765 32 H 0.423 0.577 33 H 0.040 0.960 34 H 0.030 0.970 35 H 0.268 0.732 36 H 0.080 0.920 37 H 0.084 0.916 38 H 0.077 0.923 39 H 0.038 0.962 40 H 0.044 0.956 41 H 0.093 0.907 42 H 0.059 0.941 43 H 0.097 0.903 44 H 0.059 0.941 45 H 0.095 0.905 46 H 0.085 0.915 47 H 0.041 0.959 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.635 -0.481 5.025 10.003 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.162 4.162 3 N -0.068 5.068 4 O 0.029 5.971 5 C -0.172 4.172 6 C -0.038 4.038 7 N -0.295 5.295 8 C 0.413 3.587 9 O -0.484 6.484 10 N -0.338 5.338 11 C 0.119 3.881 12 C -0.584 4.584 13 H 0.081 0.919 14 C -0.136 4.136 15 N -0.527 5.527 16 Si 0.725 3.275 17 H -0.200 1.200 18 H -0.211 1.211 19 H -0.200 1.200 20 C 0.019 3.981 21 C -0.086 4.086 22 N -0.258 5.258 23 C -0.117 4.117 24 C -0.012 4.012 25 O -0.308 6.308 26 C -0.012 4.012 27 C -0.110 4.110 28 H 0.098 0.902 29 H 0.096 0.904 30 H 0.102 0.898 31 H 0.250 0.750 32 H 0.263 0.737 33 H 0.058 0.942 34 H 0.047 0.953 35 H 0.078 0.922 36 H 0.098 0.902 37 H 0.102 0.898 38 H 0.095 0.905 39 H 0.056 0.944 40 H 0.063 0.937 41 H 0.111 0.889 42 H 0.078 0.922 43 H 0.115 0.885 44 H 0.077 0.923 45 H 0.113 0.887 46 H 0.103 0.897 47 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges 9.393 0.872 4.865 10.614 hybrid contribution -1.894 -1.264 -0.572 2.348 sum 7.500 -0.392 4.293 8.650 Atomic orbital electron populations 1.20161 0.85800 1.04036 1.03357 1.23264 0.98811 0.87620 1.06484 1.73740 0.89801 1.23769 1.19469 1.84797 1.20672 1.23282 1.68373 1.26133 1.00843 0.81793 1.08451 1.18406 0.92883 0.85381 1.07149 1.42147 1.11062 1.00573 1.75692 1.15676 0.83926 0.81310 0.77778 1.90719 1.16587 1.81331 1.59720 1.47275 1.09446 1.02424 1.74625 1.19393 0.74061 0.96964 0.97690 1.21463 0.95861 1.48962 0.92125 0.91889 1.24943 0.96480 0.94508 0.97652 1.69900 1.05811 1.45971 1.30999 0.86545 0.77754 0.78916 0.84262 1.20003 1.21053 1.20018 1.21096 0.91383 0.90628 0.94949 1.22540 0.92635 0.94427 0.99009 1.62131 1.35063 1.07170 1.21449 1.22888 0.96907 0.90026 1.01829 1.22680 0.95337 0.98885 0.84345 1.87958 1.79486 1.32031 1.31294 1.22644 0.95049 0.84519 0.98985 1.22761 0.97977 1.00152 0.90099 0.90241 0.90428 0.89830 0.74952 0.73677 0.94155 0.95257 0.92243 0.90214 0.89782 0.90476 0.94420 0.93741 0.88855 0.92224 0.88497 0.92255 0.88699 0.89669 0.94059 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.98 10.48 36.01 0.38 -0.60 16 2 C 0.00 -0.01 7.34 -81.94 -0.60 -0.61 16 3 N -0.36 -5.97 12.06 33.56 0.40 -5.56 16 4 O 0.09 1.49 11.20 16.52 0.19 1.67 16 5 C -0.09 -1.43 11.17 29.88 0.33 -1.10 16 6 C 0.06 1.09 7.16 -83.24 -0.60 0.50 16 7 N -0.64 -11.75 5.34 -13.99 -0.07 -11.82 16 8 C 0.71 13.90 8.25 -86.92 -0.72 13.19 16 9 O -0.60 -12.23 13.32 5.27 0.07 -12.16 16 10 N -0.60 -11.60 2.46 -180.81 -0.44 -12.04 16 11 C 0.24 5.14 4.93 -5.20 -0.03 5.11 16 12 C -0.55 -13.08 9.39 -34.44 -0.32 -13.41 16 13 H 0.06 1.57 7.81 -52.48 -0.41 1.16 16 14 C 0.07 1.68 5.46 -17.82 -0.10 1.58 16 15 N -0.89 -22.78 13.29 55.43 0.74 -22.05 16 16 Si 0.90 19.51 29.54 -169.99 -5.02 14.48 16 17 H -0.27 -5.97 7.11 56.52 0.40 -5.57 16 18 H -0.29 -6.17 7.11 56.52 0.40 -5.77 16 19 H -0.27 -5.99 7.11 56.52 0.40 -5.59 16 20 C 0.14 2.44 5.34 -4.05 -0.02 2.41 16 21 C 0.04 0.64 5.28 -3.83 -0.02 0.62 16 22 N -0.53 -7.10 4.73 -234.31 -1.11 -8.21 16 23 C 0.01 0.15 5.44 -3.71 -0.02 0.12 16 24 C 0.06 0.71 7.01 37.21 0.26 0.97 16 25 O -0.39 -4.80 10.83 -35.23 -0.38 -5.18 16 26 C 0.07 0.68 7.01 37.21 0.26 0.94 16 27 C 0.02 0.21 5.65 -3.71 -0.02 0.19 16 28 H 0.08 0.91 8.14 -51.93 -0.42 0.49 16 29 H 0.08 0.90 8.14 -51.93 -0.42 0.48 16 30 H 0.08 1.08 8.09 -51.93 -0.42 0.66 16 31 H 0.23 3.71 6.14 -52.49 -0.32 3.38 16 32 H 0.42 7.70 6.51 -40.82 -0.27 7.44 16 33 H 0.04 0.92 8.07 -51.93 -0.42 0.50 16 34 H 0.03 0.65 6.36 -51.93 -0.33 0.32 16 35 H 0.27 6.60 8.31 -40.82 -0.34 6.27 16 36 H 0.08 1.35 6.45 -51.93 -0.33 1.01 16 37 H 0.08 1.49 7.42 -51.92 -0.39 1.10 16 38 H 0.08 1.22 8.04 -51.92 -0.42 0.80 16 39 H 0.04 0.59 8.12 -51.93 -0.42 0.17 16 40 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16 41 H 0.09 1.16 6.38 -51.93 -0.33 0.83 16 42 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 43 H 0.10 0.90 8.14 -51.93 -0.42 0.48 16 44 H 0.06 0.60 8.14 -51.92 -0.42 0.17 16 45 H 0.09 0.79 8.14 -51.93 -0.42 0.36 16 46 H 0.08 0.91 8.09 -51.93 -0.42 0.49 16 47 H 0.04 0.50 8.14 -51.93 -0.42 0.07 16 LS Contribution 384.91 15.07 5.80 5.80 Total: -1.00 -27.49 384.91 -8.04 -35.53 By element: Atomic # 1 Polarization: 16.62 SS G_CDS: -7.00 Total: 9.62 kcal Atomic # 6 Polarization: 11.13 SS G_CDS: -1.21 Total: 9.91 kcal Atomic # 7 Polarization: -59.20 SS G_CDS: -0.49 Total: -59.68 kcal Atomic # 8 Polarization: -15.54 SS G_CDS: -0.13 Total: -15.66 kcal Atomic # 14 Polarization: 19.51 SS G_CDS: -5.02 Total: 14.48 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -27.49 -8.04 -35.53 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000888743173.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.446 kcal (2) G-P(sol) polarization free energy of solvation -27.490 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.956 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.039 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.529 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.917 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds