Wall clock time and date at job start Tue Mar 31 2020 20:28:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52999 * 109.52198 * 2 1 4 4 C 1.53194 * 109.50648 * 239.92940 * 2 1 3 5 5 N 1.46926 * 108.76407 * 294.69599 * 4 2 1 6 6 C 1.36933 * 120.63294 * 126.40471 * 5 4 2 7 7 H 1.07996 * 120.00467 * 207.66142 * 6 5 4 8 8 C 1.38813 * 119.99580 * 27.66944 * 6 5 4 9 9 N 1.31615 * 120.00251 * 17.36061 * 8 6 5 10 10 Si 1.86802 * 119.99780 * 197.36401 * 8 6 5 11 11 H 1.48499 * 109.47012 * 59.99557 * 10 8 6 12 12 H 1.48494 * 109.47365 * 179.97438 * 10 8 6 13 13 H 1.48500 * 109.47060 * 299.99760 * 10 8 6 14 14 C 1.46931 * 118.73777 * 306.38673 * 5 4 2 15 15 C 1.53193 * 108.77532 * 53.60510 * 14 5 4 16 16 C 1.53033 * 109.50011 * 120.08142 * 2 1 3 17 17 H 1.08994 * 109.46208 * 178.59194 * 16 2 1 18 18 N 1.46505 * 109.46247 * 298.56642 * 16 2 1 19 19 C 1.34768 * 120.00391 * 205.02789 * 18 16 2 20 20 O 1.21282 * 119.99961 * 359.97438 * 19 18 16 21 21 C 1.50704 * 120.00487 * 180.02562 * 19 18 16 22 22 H 1.09002 * 109.45642 * 40.01628 * 21 19 18 23 23 C 1.53038 * 109.45201 * 280.04404 * 21 19 18 24 24 C 1.50807 * 109.18539 * 286.68137 * 23 21 19 25 25 O 1.21237 * 120.02023 * 145.78838 * 24 23 21 26 26 N 1.34563 * 119.96532 * 325.77592 * 24 23 21 27 27 C 1.34340 * 120.98573 * 4.42551 * 26 24 23 28 28 O 1.21539 * 119.20601 * 192.30474 * 27 26 24 29 29 N 1.34287 * 121.58176 * 12.02813 * 27 26 24 30 30 H 1.09004 * 109.47221 * 299.91706 * 1 2 3 31 31 H 1.09000 * 109.47416 * 59.91437 * 1 2 3 32 32 H 1.08996 * 109.47605 * 179.97438 * 1 2 3 33 33 H 1.09004 * 109.47093 * 180.08424 * 3 2 1 34 34 H 1.09005 * 109.47328 * 300.08129 * 3 2 1 35 35 H 1.09000 * 109.47262 * 60.08304 * 3 2 1 36 36 H 1.09002 * 109.59314 * 174.91094 * 4 2 1 37 37 H 1.08994 * 109.58436 * 54.47551 * 4 2 1 38 38 H 0.96998 * 119.99951 * 180.02562 * 9 8 6 39 39 H 1.08999 * 109.58394 * 293.82319 * 14 5 4 40 40 H 1.08993 * 109.70407 * 173.46734 * 14 5 4 41 41 H 1.09001 * 109.49464 * 185.41022 * 15 14 5 42 42 H 1.09004 * 109.52121 * 65.33436 * 15 14 5 43 43 H 0.97004 * 119.99535 * 25.02588 * 18 16 2 44 44 H 1.09001 * 109.52180 * 46.59320 * 23 21 19 45 45 H 1.08996 * 109.51828 * 166.71051 * 23 21 19 46 46 H 0.97005 * 119.50467 * 184.43798 * 26 24 23 47 47 H 0.97006 * 119.53458 * 185.66922 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0413 1.4420 0.0000 4 6 2.0415 -0.7235 -1.2497 5 7 1.6515 -2.1378 -1.1698 6 6 0.9638 -2.7309 -2.1948 7 1 0.3079 -3.5649 -1.9936 8 6 1.1099 -2.2600 -3.4924 9 7 2.1347 -1.4950 -3.8035 10 14 -0.1482 -2.7120 -4.7971 11 1 -1.4873 -2.2195 -4.3853 12 1 0.2325 -2.0874 -6.0894 13 1 -0.1904 -4.1881 -4.9538 14 6 2.0137 -2.9039 0.0305 15 6 1.5027 -2.1556 1.2658 16 6 2.0408 -0.7230 1.2483 17 1 3.1305 -0.7446 1.2351 18 7 1.5811 -0.0144 2.4453 19 6 2.2701 -0.1223 3.5985 20 8 3.2704 -0.8064 3.6456 21 6 1.7969 0.6062 4.8300 22 1 0.7100 0.5503 4.8898 23 6 2.2287 2.0723 4.7524 24 6 3.7137 2.1653 4.9981 25 8 4.3724 3.0047 4.4224 26 7 4.3073 1.3163 5.8570 27 6 3.6138 0.3234 6.4384 28 8 4.1099 -0.2804 7.3692 29 7 2.3835 -0.0142 6.0193 30 1 -0.3634 0.5126 0.8908 31 1 -0.3634 0.5152 -0.8892 32 1 -0.3634 -1.0276 -0.0005 33 1 3.1313 1.4411 -0.0015 34 1 1.6772 1.9567 -0.8893 35 1 1.6796 1.9558 0.8907 36 1 3.1277 -0.6462 -1.2979 37 1 1.6011 -0.2727 -2.1389 38 1 2.2365 -1.1657 -4.7101 39 1 3.0976 -3.0043 0.0866 40 1 1.5569 -3.8925 -0.0128 41 1 1.8476 -2.6629 2.1668 42 1 0.4129 -2.1351 1.2543 43 1 0.7808 0.5325 2.4078 44 1 1.9978 2.4681 3.7633 45 1 1.6967 2.6492 5.5088 46 1 5.2499 1.4230 6.0594 47 1 1.8763 -0.6787 6.5115 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000941067774.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:28:38 Heat of formation + Delta-G solvation = -104.095469 kcal Electronic energy + Delta-G solvation = -31361.789194 eV Core-core repulsion = 27158.084152 eV Total energy + Delta-G solvation = -4203.705042 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -42.89062 -41.22621 -39.96490 -39.60055 -36.93272 -36.26040 -35.35091 -34.31343 -33.83192 -32.10178 -30.99380 -28.08896 -27.59760 -27.53069 -26.13954 -24.57361 -23.97805 -22.28884 -22.09963 -20.84341 -19.90622 -19.24278 -19.10850 -18.47003 -18.15182 -17.39281 -17.20605 -16.85061 -16.65129 -16.19445 -15.77920 -15.71893 -15.53541 -15.44466 -15.13684 -14.99993 -14.87380 -14.44186 -14.29905 -13.84493 -13.42582 -13.33790 -13.23067 -13.00495 -12.85313 -12.67644 -12.56925 -12.43786 -12.29989 -11.96165 -11.92902 -11.80508 -11.63272 -11.52056 -11.38059 -11.36573 -11.28567 -11.11787 -10.51580 -10.26762 -9.97957 -8.67380 -7.85366 -5.30384 0.62502 1.36069 1.49598 1.50508 1.57683 1.58370 1.84133 2.18818 2.33596 2.53062 3.27599 3.29747 3.40810 3.60195 3.69034 3.77783 4.00693 4.10325 4.15017 4.24050 4.36968 4.48148 4.51535 4.61204 4.68384 4.82467 4.86997 4.90130 4.99854 5.00877 5.06855 5.14613 5.19261 5.29093 5.33663 5.39487 5.48046 5.56126 5.63282 5.74229 5.77026 5.79734 6.17552 6.40276 6.42208 6.57656 7.09580 7.16599 7.25510 7.86636 8.39368 9.20957 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.024295 B = 0.002928 C = 0.002806 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1152.201431 B = 9561.134245 C = 9977.554988 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.086 4.086 3 C -0.130 4.130 4 C 0.194 3.806 5 N -0.602 5.602 6 C -0.258 4.258 7 H 0.068 0.932 8 C -0.048 4.048 9 N -0.936 5.936 10 Si 0.964 3.036 11 H -0.272 1.272 12 H -0.298 1.298 13 H -0.280 1.280 14 C 0.141 3.859 15 C -0.124 4.124 16 C 0.177 3.823 17 H 0.043 0.957 18 N -0.695 5.695 19 C 0.480 3.520 20 O -0.576 6.576 21 C 0.131 3.869 22 H 0.201 0.799 23 C -0.143 4.143 24 C 0.516 3.484 25 O -0.537 6.537 26 N -0.675 5.675 27 C 0.724 3.276 28 O -0.598 6.598 29 N -0.692 5.692 30 H 0.083 0.917 31 H 0.041 0.959 32 H 0.051 0.949 33 H 0.031 0.969 34 H 0.054 0.946 35 H 0.086 0.914 36 H -0.023 1.023 37 H 0.063 0.937 38 H 0.249 0.751 39 H -0.005 1.005 40 H 0.057 0.943 41 H 0.057 0.943 42 H 0.082 0.918 43 H 0.419 0.581 44 H 0.149 0.851 45 H 0.176 0.824 46 H 0.423 0.577 47 H 0.438 0.562 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.444 10.373 19.949 24.387 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.089 4.089 3 C -0.187 4.187 4 C 0.068 3.932 5 N -0.324 5.324 6 C -0.388 4.388 7 H 0.086 0.914 8 C -0.243 4.243 9 N -0.582 5.582 10 Si 0.792 3.208 11 H -0.198 1.198 12 H -0.225 1.225 13 H -0.206 1.206 14 C 0.015 3.985 15 C -0.164 4.164 16 C 0.071 3.929 17 H 0.061 0.939 18 N -0.348 5.348 19 C 0.265 3.735 20 O -0.454 6.454 21 C 0.022 3.978 22 H 0.218 0.782 23 C -0.183 4.183 24 C 0.306 3.694 25 O -0.412 6.412 26 N -0.342 5.342 27 C 0.424 3.576 28 O -0.476 6.476 29 N -0.350 5.350 30 H 0.102 0.898 31 H 0.060 0.940 32 H 0.070 0.930 33 H 0.050 0.950 34 H 0.073 0.927 35 H 0.105 0.895 36 H -0.005 1.005 37 H 0.081 0.919 38 H 0.058 0.942 39 H 0.013 0.987 40 H 0.075 0.925 41 H 0.076 0.924 42 H 0.100 0.900 43 H 0.258 0.742 44 H 0.167 0.833 45 H 0.194 0.806 46 H 0.264 0.736 47 H 0.280 0.720 Dipole moment (debyes) X Y Z Total from point charges -8.215 10.168 19.871 23.785 hybrid contribution 0.487 -0.703 -1.263 1.525 sum -7.728 9.465 18.608 22.261 Atomic orbital electron populations 1.21677 0.92530 1.01983 1.01504 1.21321 0.97765 0.95444 0.94322 1.21742 0.99730 0.94551 1.02714 1.20620 0.93704 0.83567 0.95345 1.44270 1.65094 1.06530 1.16553 1.19445 1.17752 1.15031 0.86560 0.91428 1.25746 0.98596 1.01063 0.98889 1.70190 1.29178 1.39962 1.18891 0.85394 0.79493 0.77731 0.78139 1.19794 1.22466 1.20578 1.20977 0.95461 0.94954 0.87137 1.22206 1.01761 0.95291 0.97149 1.20523 0.97161 0.91337 0.83847 0.93856 1.45971 1.30080 1.49932 1.08788 1.21873 0.83641 0.81961 0.86060 1.90788 1.27375 1.42178 1.85081 1.21437 1.04161 0.90625 0.81578 0.78198 1.22478 0.88936 0.96021 1.10831 1.21723 0.92776 0.78932 0.75950 1.90808 1.67248 1.36367 1.46764 1.44263 1.16050 1.29548 1.44377 1.15703 0.81594 0.79320 0.80993 1.91012 1.69034 1.55789 1.31722 1.44694 1.15331 1.46090 1.28887 0.89822 0.94018 0.93021 0.94976 0.92732 0.89539 1.00513 0.91915 0.94208 0.98686 0.92469 0.92386 0.89974 0.74196 0.83349 0.80631 0.73614 0.72037 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.18 7.83 71.98 0.56 -2.62 16 2 C -0.09 -2.71 0.56 -52.11 -0.03 -2.74 16 3 C -0.13 -3.46 8.31 71.98 0.60 -2.86 16 4 C 0.19 8.88 3.99 86.36 0.34 9.22 16 5 N -0.60 -28.96 2.43 -699.10 -1.70 -30.66 16 6 C -0.26 -13.61 9.59 84.03 0.81 -12.80 16 7 H 0.07 3.47 7.89 -2.91 -0.02 3.44 16 8 C -0.05 -2.58 4.91 84.86 0.42 -2.16 16 9 N -0.94 -54.50 11.19 21.65 0.24 -54.25 16 10 Si 0.96 43.47 29.59 68.60 2.03 45.50 16 11 H -0.27 -11.66 7.11 99.48 0.71 -10.95 16 12 H -0.30 -13.70 7.11 99.48 0.71 -12.99 16 13 H -0.28 -12.36 7.11 99.48 0.71 -11.66 16 14 C 0.14 5.88 6.51 86.36 0.56 6.44 16 15 C -0.12 -3.94 5.31 30.67 0.16 -3.78 16 16 C 0.18 5.22 1.57 45.01 0.07 5.29 16 17 H 0.04 1.64 7.58 -2.39 -0.02 1.63 16 18 N -0.69 -12.26 4.29 -442.42 -1.90 -14.15 16 19 C 0.48 9.07 6.68 87.66 0.59 9.65 16 20 O -0.58 -17.98 15.81 -3.04 -0.05 -18.03 16 21 C 0.13 0.91 3.63 44.28 0.16 1.07 16 22 H 0.20 -1.04 8.14 -2.39 -0.02 -1.06 16 23 C -0.14 -0.85 5.71 29.89 0.17 -0.68 16 24 C 0.52 9.43 7.44 87.72 0.65 10.08 16 25 O -0.54 -14.12 17.93 -2.90 -0.05 -14.17 16 26 N -0.67 -13.44 5.18 -441.64 -2.29 -15.73 16 27 C 0.72 15.06 7.98 179.34 1.43 16.49 16 28 O -0.60 -17.15 17.97 -3.84 -0.07 -17.22 16 29 N -0.69 -8.40 4.90 -462.66 -2.27 -10.66 16 30 H 0.08 1.31 6.58 -2.38 -0.02 1.30 16 31 H 0.04 1.22 8.14 -2.39 -0.02 1.20 16 32 H 0.05 1.61 5.97 -2.39 -0.01 1.59 16 33 H 0.03 0.97 8.14 -2.38 -0.02 0.95 16 34 H 0.05 1.49 8.14 -2.38 -0.02 1.47 16 35 H 0.09 1.54 7.36 -2.39 -0.02 1.53 16 36 H -0.02 -1.22 8.14 -2.39 -0.02 -1.24 16 37 H 0.06 3.26 6.04 -2.39 -0.01 3.24 16 38 H 0.25 14.15 8.31 -92.71 -0.77 13.38 16 39 H 0.00 -0.22 8.14 -2.39 -0.02 -0.24 16 40 H 0.06 2.32 7.94 -2.39 -0.02 2.30 16 41 H 0.06 1.81 8.14 -2.39 -0.02 1.79 16 42 H 0.08 2.36 6.33 -2.38 -0.02 2.35 16 43 H 0.42 3.80 6.66 -92.71 -0.62 3.18 16 44 H 0.15 0.51 8.07 -2.39 -0.02 0.49 16 45 H 0.18 -0.46 8.14 -2.39 -0.02 -0.48 16 46 H 0.42 8.54 8.86 -92.70 -0.82 7.71 16 47 H 0.44 3.66 8.90 -92.70 -0.83 2.83 16 Total: -1.00 -86.22 372.25 -0.78 -87.00 By element: Atomic # 1 Polarization: 13.01 SS G_CDS: -1.23 Total: 11.78 kcal Atomic # 6 Polarization: 24.11 SS G_CDS: 6.50 Total: 30.61 kcal Atomic # 7 Polarization: -117.56 SS G_CDS: -7.91 Total: -125.47 kcal Atomic # 8 Polarization: -49.25 SS G_CDS: -0.17 Total: -49.42 kcal Atomic # 14 Polarization: 43.47 SS G_CDS: 2.03 Total: 45.50 kcal Total: -86.22 -0.78 -87.00 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000941067774.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.093 kcal (2) G-P(sol) polarization free energy of solvation -86.222 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.315 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.780 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.002 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.095 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds