Wall clock time and date at job start Tue Mar 31 2020 20:28:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.52997 * 109.52730 * 2 1 4 4 C 1.53194 * 109.48659 * 239.90943 * 2 1 3 5 5 N 1.46923 * 108.76433 * 185.40037 * 4 2 1 6 6 C 1.36948 * 120.62814 * 233.59225 * 5 4 2 7 7 H 1.07997 * 119.99866 * 152.80852 * 6 5 4 8 8 C 1.38814 * 120.00028 * 332.81134 * 6 5 4 9 9 N 1.31620 * 119.99795 * 159.74593 * 8 6 5 10 10 Si 1.86798 * 119.99851 * 339.74644 * 8 6 5 11 11 H 1.48499 * 109.47386 * 94.89777 * 10 8 6 12 12 H 1.48501 * 109.46931 * 214.89591 * 10 8 6 13 13 H 1.48501 * 109.47175 * 334.89398 * 10 8 6 14 14 C 1.46923 * 118.74162 * 53.61663 * 5 4 2 15 15 C 1.53188 * 108.77548 * 306.39325 * 14 5 4 16 16 C 1.53035 * 109.31496 * 54.63167 * 15 14 5 17 17 H 1.09005 * 109.46061 * 58.64362 * 16 15 14 18 18 N 1.46504 * 109.45999 * 178.61332 * 16 15 14 19 19 C 1.34770 * 120.00203 * 275.02548 * 18 16 15 20 20 O 1.21279 * 119.99995 * 0.02562 * 19 18 16 21 21 C 1.50696 * 119.99939 * 179.97438 * 19 18 16 22 22 H 1.09003 * 109.45536 * 40.03011 * 21 19 18 23 23 C 1.53039 * 109.46758 * 280.05195 * 21 19 18 24 24 C 1.50800 * 109.18512 * 286.68221 * 23 21 19 25 25 O 1.21233 * 120.01759 * 145.78558 * 24 23 21 26 26 N 1.34466 * 119.92270 * 325.49929 * 24 23 21 27 27 C 1.34341 * 121.05835 * 4.97744 * 26 24 23 28 28 O 1.21536 * 119.20514 * 191.73519 * 27 26 24 29 29 N 1.34287 * 121.58343 * 11.46793 * 27 26 24 30 30 H 1.09003 * 109.47204 * 299.92142 * 1 2 3 31 31 H 1.09000 * 109.47314 * 59.91791 * 1 2 3 32 32 H 1.09003 * 109.47142 * 179.97438 * 1 2 3 33 33 H 1.09002 * 109.47530 * 180.08549 * 3 2 1 34 34 H 1.09006 * 109.47018 * 300.08135 * 3 2 1 35 35 H 1.09001 * 109.47351 * 60.07990 * 3 2 1 36 36 H 1.09001 * 109.58579 * 65.61860 * 4 2 1 37 37 H 1.09001 * 109.59721 * 305.18581 * 4 2 1 38 38 H 0.96993 * 119.99941 * 179.97438 * 9 8 6 39 39 H 1.09002 * 109.58606 * 186.60125 * 14 5 4 40 40 H 1.09005 * 109.58530 * 66.18225 * 14 5 4 41 41 H 1.08998 * 109.49413 * 294.68125 * 15 14 5 42 42 H 1.09000 * 109.49727 * 174.58643 * 15 14 5 43 43 H 0.97000 * 119.99570 * 95.03195 * 18 16 15 44 44 H 1.09003 * 109.51771 * 46.59351 * 23 21 19 45 45 H 1.09001 * 109.51709 * 166.76698 * 23 21 19 46 46 H 0.96998 * 119.43189 * 184.70175 * 26 24 23 47 47 H 0.97000 * 119.53951 * 185.98781 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0413 1.4420 0.0000 4 6 2.0410 -0.7241 -1.2496 5 7 3.5043 -0.8291 -1.1697 6 6 4.2931 -0.3792 -2.1948 7 1 5.3010 -0.0469 -1.9948 8 6 3.7970 -0.3504 -3.4910 9 7 4.3611 0.4231 -4.3944 10 14 2.3291 -1.4091 -3.9531 11 1 1.0842 -0.6082 -3.8348 12 1 2.4816 -1.8832 -5.3521 13 1 2.2545 -2.5777 -3.0398 14 6 4.1052 -1.4264 0.0306 15 6 3.5708 -0.6947 1.2658 16 6 2.0408 -0.7231 1.2484 17 1 1.6969 -1.7573 1.2352 18 7 1.5265 -0.0529 2.4454 19 6 1.3980 -0.7383 3.5986 20 8 1.7084 -1.9097 3.6457 21 6 0.8695 -0.0488 4.8300 22 1 0.0535 0.6179 4.5508 23 6 1.9915 0.7634 5.4809 24 6 2.9587 -0.1780 6.1535 25 8 4.1416 0.0858 6.1814 26 7 2.5067 -1.3071 6.7269 27 6 1.2160 -1.6662 6.6277 28 8 0.7953 -2.5662 7.3278 29 7 0.3782 -1.0511 5.7774 30 1 -0.3634 0.5126 0.8907 31 1 -0.3634 0.5151 -0.8892 32 1 -0.3633 -1.0277 -0.0005 33 1 3.1314 1.4410 -0.0015 34 1 1.6773 1.9566 -0.8893 35 1 1.6797 1.9558 0.8907 36 1 1.7632 -0.1584 -2.1389 37 1 1.6051 -1.7220 -1.2978 38 1 4.0148 0.4430 -5.3001 39 1 5.1895 -1.3241 -0.0141 40 1 3.8377 -2.4816 0.0867 41 1 3.9157 0.3392 1.2537 42 1 3.9336 -1.1892 2.1669 43 1 1.2785 0.8841 2.4077 44 1 2.5148 1.3388 4.7172 45 1 1.5677 1.4410 6.2221 46 1 3.1238 -1.8731 7.2166 47 1 -0.5659 -1.2736 5.7913 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000941067775.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:28:43 Heat of formation + Delta-G solvation = -68.560108 kcal Electronic energy + Delta-G solvation = -31493.969053 eV Core-core repulsion = 27291.804940 eV Total energy + Delta-G solvation = -4202.164113 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -42.18136 -40.25835 -39.14802 -38.58721 -36.14164 -34.93514 -34.60454 -33.23564 -32.18742 -31.39230 -30.12334 -27.04732 -26.74532 -26.17656 -24.77538 -23.82495 -22.83756 -21.34701 -20.61976 -20.12739 -19.06368 -18.48959 -18.08736 -17.48273 -17.04689 -16.50551 -16.38224 -15.87112 -15.42715 -15.20589 -14.94673 -14.61839 -14.52700 -14.42917 -14.00103 -13.77244 -13.75378 -13.42805 -12.99841 -12.86922 -12.73311 -12.49444 -12.11851 -11.86116 -11.80546 -11.33761 -11.21527 -11.13931 -10.87819 -10.78665 -10.69105 -10.59497 -10.52754 -10.52029 -10.26601 -9.97406 -9.83847 -9.56410 -9.45507 -8.98276 -8.67825 -7.03447 -5.99484 -3.35633 1.36293 2.03463 2.31629 2.54251 2.86919 3.04438 3.25944 3.45172 3.47133 3.77101 3.92677 4.25607 4.39895 4.47664 4.59702 4.79982 4.83724 4.86400 5.13995 5.16526 5.36433 5.49105 5.58901 5.62500 5.73471 5.81079 5.85307 5.90970 5.97482 6.11623 6.16517 6.22990 6.30917 6.32605 6.35629 6.50333 6.55149 6.60281 6.61832 6.74548 6.86981 6.93263 7.13049 7.32170 7.81667 7.90422 7.97468 8.28136 8.88615 9.66935 10.03759 11.16409 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.021967 B = 0.003168 C = 0.003058 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1274.358246 B = 8835.360633 C = 9154.700748 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.090 4.090 3 C -0.130 4.130 4 C 0.141 3.859 5 N -0.603 5.603 6 C -0.258 4.258 7 H 0.087 0.913 8 C 0.025 3.975 9 N -0.907 5.907 10 Si 0.878 3.122 11 H -0.289 1.289 12 H -0.303 1.303 13 H -0.269 1.269 14 C 0.150 3.850 15 C -0.144 4.144 16 C 0.163 3.837 17 H 0.083 0.917 18 N -0.712 5.712 19 C 0.486 3.514 20 O -0.520 6.520 21 C 0.119 3.881 22 H 0.134 0.866 23 C -0.150 4.150 24 C 0.525 3.475 25 O -0.493 6.493 26 N -0.670 5.670 27 C 0.726 3.274 28 O -0.556 6.556 29 N -0.706 5.706 30 H 0.049 0.951 31 H 0.057 0.943 32 H 0.051 0.949 33 H 0.076 0.924 34 H 0.056 0.944 35 H 0.035 0.965 36 H 0.077 0.923 37 H 0.027 0.973 38 H 0.262 0.738 39 H 0.067 0.933 40 H 0.024 0.976 41 H 0.070 0.930 42 H 0.057 0.943 43 H 0.398 0.602 44 H 0.132 0.868 45 H 0.128 0.872 46 H 0.428 0.572 47 H 0.428 0.572 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.211 4.630 19.621 23.067 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.092 4.092 3 C -0.187 4.187 4 C 0.014 3.986 5 N -0.325 5.325 6 C -0.386 4.386 7 H 0.104 0.896 8 C -0.174 4.174 9 N -0.550 5.550 10 Si 0.708 3.292 11 H -0.217 1.217 12 H -0.231 1.231 13 H -0.194 1.194 14 C 0.024 3.976 15 C -0.184 4.184 16 C 0.060 3.940 17 H 0.101 0.899 18 N -0.364 5.364 19 C 0.268 3.732 20 O -0.395 6.395 21 C 0.009 3.991 22 H 0.152 0.848 23 C -0.191 4.191 24 C 0.312 3.688 25 O -0.364 6.364 26 N -0.339 5.339 27 C 0.426 3.574 28 O -0.430 6.430 29 N -0.365 5.365 30 H 0.068 0.932 31 H 0.076 0.924 32 H 0.070 0.930 33 H 0.095 0.905 34 H 0.075 0.925 35 H 0.053 0.947 36 H 0.095 0.905 37 H 0.045 0.955 38 H 0.072 0.928 39 H 0.085 0.915 40 H 0.042 0.958 41 H 0.088 0.912 42 H 0.076 0.924 43 H 0.234 0.766 44 H 0.150 0.850 45 H 0.146 0.854 46 H 0.269 0.731 47 H 0.267 0.733 Dipole moment (debyes) X Y Z Total from point charges -10.465 3.641 19.753 22.648 hybrid contribution -1.142 -0.404 -0.419 1.282 sum -11.607 3.237 19.334 22.781 Atomic orbital electron populations 1.21833 0.95039 1.01536 1.01315 1.21383 0.94613 0.97222 0.96003 1.21775 1.03228 0.93823 0.99896 1.21400 0.85058 0.96965 0.95168 1.44364 1.00503 1.69904 1.17769 1.18911 0.98422 1.36143 0.85108 0.89574 1.25259 0.97871 0.98609 0.95652 1.69824 1.43001 1.38114 1.04097 0.87026 0.82701 0.82440 0.77026 1.21693 1.23135 1.19420 1.20895 0.97432 0.94135 0.85163 1.22442 0.94298 1.02185 0.99507 1.21031 0.94169 0.96735 0.82101 0.89862 1.46289 1.65415 1.14478 1.10172 1.20893 0.79457 0.87911 0.84923 1.90783 1.48600 1.15814 1.84311 1.21127 0.98894 0.90398 0.88672 0.84804 1.22255 0.95563 0.98032 1.03227 1.20699 0.89526 0.81526 0.77099 1.90830 1.16680 1.73426 1.55466 1.44125 1.11000 1.25303 1.53501 1.15495 0.80525 0.81100 0.80233 1.91042 1.74855 1.30822 1.46296 1.44713 1.11794 1.43516 1.36453 0.93150 0.92373 0.92961 0.90476 0.92534 0.94653 0.90498 0.95546 0.92765 0.91483 0.95784 0.91179 0.92422 0.76618 0.85016 0.85362 0.73098 0.73256 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.72 8.31 37.15 0.31 -1.41 16 2 C -0.09 -1.34 0.56 -154.39 -0.09 -1.43 16 3 C -0.13 -1.86 7.83 37.16 0.29 -1.57 16 4 C 0.14 2.82 2.87 -3.71 -0.01 2.81 16 5 N -0.60 -13.38 2.21 -172.32 -0.38 -13.77 16 6 C -0.26 -6.84 10.04 -15.05 -0.15 -6.99 16 7 H 0.09 2.46 8.05 -52.49 -0.42 2.04 16 8 C 0.02 0.70 5.24 -17.43 -0.09 0.60 16 9 N -0.91 -26.96 13.97 55.49 0.78 -26.19 16 10 Si 0.88 21.65 24.35 -169.99 -4.14 17.51 16 11 H -0.29 -6.80 6.70 56.52 0.38 -6.43 16 12 H -0.30 -7.71 7.11 56.52 0.40 -7.31 16 13 H -0.27 -6.58 6.45 56.52 0.36 -6.21 16 14 C 0.15 2.89 6.52 -3.71 -0.02 2.86 16 15 C -0.14 -2.29 5.31 -26.62 -0.14 -2.43 16 16 C 0.16 2.31 1.57 -67.89 -0.11 2.20 16 17 H 0.08 1.37 7.58 -51.93 -0.39 0.98 16 18 N -0.71 -7.05 4.29 -53.77 -0.23 -7.28 16 19 C 0.49 5.02 6.68 -10.99 -0.07 4.95 16 20 O -0.52 -7.91 15.81 5.56 0.09 -7.82 16 21 C 0.12 0.67 3.63 -69.11 -0.25 0.42 16 22 H 0.13 0.16 8.14 -51.93 -0.42 -0.27 16 23 C -0.15 -0.79 5.71 -27.81 -0.16 -0.95 16 24 C 0.52 5.12 7.44 -11.08 -0.08 5.04 16 25 O -0.49 -6.54 17.93 5.60 0.10 -6.44 16 26 N -0.67 -6.63 5.17 -16.04 -0.08 -6.71 16 27 C 0.73 7.71 7.98 -87.75 -0.70 7.01 16 28 O -0.56 -7.78 17.97 5.33 0.10 -7.68 16 29 N -0.71 -5.14 4.91 -60.11 -0.29 -5.43 16 30 H 0.05 0.47 7.36 -51.93 -0.38 0.09 16 31 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 32 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 33 H 0.08 1.31 5.97 -51.93 -0.31 1.00 16 34 H 0.06 0.88 8.14 -51.93 -0.42 0.45 16 35 H 0.03 0.36 6.58 -51.93 -0.34 0.02 16 36 H 0.08 1.71 4.50 -51.93 -0.23 1.48 16 37 H 0.03 0.55 6.98 -51.93 -0.36 0.19 16 38 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 39 H 0.07 1.30 7.93 -51.93 -0.41 0.89 16 40 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 41 H 0.07 1.10 6.33 -51.93 -0.33 0.77 16 42 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 43 H 0.40 2.77 6.66 -40.82 -0.27 2.50 16 44 H 0.13 0.60 8.07 -51.93 -0.42 0.18 16 45 H 0.13 0.26 8.14 -51.93 -0.42 -0.16 16 46 H 0.43 3.97 8.86 -40.82 -0.36 3.61 16 47 H 0.43 2.34 8.90 -40.82 -0.36 1.97 16 LS Contribution 365.63 15.07 5.51 5.51 Total: -1.00 -36.58 365.63 -6.59 -43.17 By element: Atomic # 1 Polarization: 10.76 SS G_CDS: -6.76 Total: 4.00 kcal Atomic # 6 Polarization: 12.39 SS G_CDS: -1.28 Total: 11.12 kcal Atomic # 7 Polarization: -59.15 SS G_CDS: -0.21 Total: -59.37 kcal Atomic # 8 Polarization: -22.22 SS G_CDS: 0.28 Total: -21.94 kcal Atomic # 14 Polarization: 21.65 SS G_CDS: -4.14 Total: 17.51 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -36.58 -6.59 -43.17 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000941067775.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.389 kcal (2) G-P(sol) polarization free energy of solvation -36.578 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.967 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.593 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.171 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.560 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds