Wall clock time and date at job start Tue Mar 31 2020 20:28:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53002 * 109.52664 * 2 1 4 4 C 1.53196 * 109.49797 * 120.07582 * 2 1 3 5 5 N 1.46918 * 108.77947 * 174.58751 * 4 2 1 6 6 C 1.36935 * 120.63174 * 126.36935 * 5 4 2 7 7 H 1.07993 * 119.99874 * 332.26473 * 6 5 4 8 8 C 1.38811 * 119.99824 * 152.26066 * 6 5 4 9 9 N 1.31623 * 119.99883 * 143.92249 * 8 6 5 10 10 Si 1.86807 * 120.00142 * 323.92084 * 8 6 5 11 11 H 1.48504 * 109.47053 * 270.00108 * 10 8 6 12 12 H 1.48498 * 109.46996 * 30.00095 * 10 8 6 13 13 H 1.48504 * 109.46928 * 150.00140 * 10 8 6 14 14 C 1.46928 * 118.73555 * 306.64708 * 5 4 2 15 15 C 1.52757 * 109.01169 * 53.31036 * 14 5 4 16 16 C 1.53035 * 109.50139 * 239.91528 * 2 1 3 17 17 H 1.09000 * 109.46096 * 298.70522 * 16 2 1 18 18 N 1.46509 * 109.45904 * 58.67707 * 16 2 1 19 19 C 1.34778 * 119.99911 * 205.00145 * 18 16 2 20 20 O 1.21278 * 119.99759 * 0.02562 * 19 18 16 21 21 C 1.50696 * 119.99614 * 179.97438 * 19 18 16 22 22 N 1.46500 * 109.46817 * 180.02562 * 21 19 18 23 23 C 1.47312 * 126.69210 * 269.70776 * 22 21 19 24 24 C 1.51579 * 103.59488 * 179.97438 * 23 22 21 25 25 O 1.21236 * 127.15933 * 180.08245 * 24 23 22 26 26 N 1.34765 * 105.68203 * 0.33722 * 24 23 22 27 27 C 1.33786 * 111.64684 * 359.77695 * 26 24 23 28 28 O 1.21543 * 123.76890 * 179.97438 * 27 26 24 29 29 H 1.09003 * 109.47477 * 299.92663 * 1 2 3 30 30 H 1.09005 * 109.46973 * 59.91862 * 1 2 3 31 31 H 1.08995 * 109.47718 * 179.97438 * 1 2 3 32 32 H 1.08996 * 109.47568 * 180.02562 * 3 2 1 33 33 H 1.09006 * 109.46745 * 300.08032 * 3 2 1 34 34 H 1.09001 * 109.47204 * 60.07716 * 3 2 1 35 35 H 1.09006 * 109.58134 * 54.79745 * 4 2 1 36 36 H 1.08999 * 109.58767 * 294.38040 * 4 2 1 37 37 H 0.96995 * 120.00163 * 354.91920 * 9 8 6 38 38 H 1.09006 * 109.58791 * 173.14504 * 14 5 4 39 39 H 1.09005 * 109.58713 * 293.56804 * 14 5 4 40 40 H 1.09000 * 109.57137 * 185.55605 * 15 14 5 41 41 H 1.08996 * 109.38922 * 65.51294 * 15 14 5 42 42 H 0.96996 * 119.99829 * 25.00141 * 18 16 2 43 43 H 1.09005 * 109.47262 * 300.00261 * 21 19 18 44 44 H 1.09005 * 109.47429 * 60.00144 * 21 19 18 45 45 H 1.09002 * 110.59754 * 298.57103 * 23 22 21 46 46 H 1.09002 * 110.59789 * 61.51021 * 23 22 21 47 47 H 0.97009 * 124.17414 * 179.81705 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0414 1.4420 0.0000 4 6 2.0413 -0.7237 1.2497 5 7 3.5045 -0.8291 1.1698 6 6 4.2934 -0.3783 2.1942 7 1 3.9469 0.4224 2.8305 8 6 5.5386 -0.9509 2.4149 9 7 6.5444 -0.2036 2.8178 10 14 5.7867 -2.7819 2.1400 11 1 5.5025 -3.5146 3.4001 12 1 4.8646 -3.2520 1.0752 13 1 7.1904 -3.0345 1.7264 14 6 4.1054 -1.4216 -0.0330 15 6 3.5709 -0.6951 -1.2658 16 6 2.0408 -0.7231 -1.2482 17 1 1.6968 -1.7573 -1.2352 18 7 1.5268 -0.0528 -2.4453 19 6 1.3988 -0.7381 -3.5988 20 8 1.7087 -1.9097 -3.6456 21 6 0.8696 -0.0487 -4.8299 22 7 0.8261 -1.0012 -5.9422 23 6 1.8983 -1.2654 -6.9172 24 6 1.3043 -2.3274 -7.8210 25 8 1.8329 -2.8560 -8.7754 26 7 0.0641 -2.5575 -7.3464 27 6 -0.2033 -1.8000 -6.2766 28 8 -1.2587 -1.8298 -5.6744 29 1 -0.3634 0.5127 0.8906 30 1 -0.3633 0.5151 -0.8893 31 1 -0.3634 -1.0276 -0.0005 32 1 3.1313 1.4411 -0.0005 33 1 1.6773 1.9566 -0.8893 34 1 1.6797 1.9558 0.8907 35 1 1.6051 -1.7215 1.2981 36 1 1.7637 -0.1578 2.1389 37 1 6.4362 0.7576 2.8898 38 1 5.1895 -1.3160 0.0102 39 1 3.8411 -2.4775 -0.0913 40 1 3.9334 -1.1898 -2.1669 41 1 3.9159 0.3388 -1.2545 42 1 1.2787 0.8841 -2.4077 43 1 -0.1350 0.3257 -4.6331 44 1 1.5233 0.7840 -5.0895 45 1 2.1315 -0.3643 -7.4843 46 1 2.7883 -1.6447 -6.4150 47 1 -0.5576 -3.1943 -7.7324 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000941104136.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:28:47 Heat of formation + Delta-G solvation = -74.840199 kcal Electronic energy + Delta-G solvation = -30697.311984 eV Core-core repulsion = 26494.875546 eV Total energy + Delta-G solvation = -4202.436438 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -43.27516 -41.36374 -39.89016 -39.45328 -37.29702 -36.43950 -35.47293 -34.54400 -33.68853 -32.01270 -30.24610 -28.19641 -28.05678 -27.68513 -26.22646 -23.89525 -23.32846 -22.77126 -22.56564 -21.26643 -19.86168 -19.42227 -19.21310 -18.53905 -17.79138 -17.53616 -17.25024 -16.85920 -16.44147 -16.20720 -15.95353 -15.73231 -15.59136 -15.38069 -15.31764 -15.22423 -14.99819 -14.73020 -14.33106 -13.98755 -13.97788 -13.81344 -13.12605 -13.00799 -12.88486 -12.69151 -12.60307 -12.44048 -12.23947 -12.16637 -11.81340 -11.70741 -11.50239 -11.45154 -11.44153 -11.36675 -11.22146 -11.09205 -10.39916 -10.02534 -9.96780 -8.98392 -8.54197 -5.39248 0.55381 1.10525 1.51875 1.54540 1.65340 1.73678 1.87288 1.98983 2.37441 2.58947 2.97046 3.05436 3.45342 3.65064 3.77237 3.79834 3.91693 4.01801 4.26829 4.30972 4.35015 4.37504 4.40528 4.52486 4.61613 4.67692 4.77962 4.80196 4.88059 4.95807 4.99968 5.03166 5.03446 5.10476 5.16529 5.19644 5.26949 5.32169 5.40616 5.55848 5.67118 5.89142 5.91973 6.30868 6.31591 6.61182 6.92408 6.99703 7.30837 7.65152 8.17373 8.83638 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.016897 B = 0.002921 C = 0.002666 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1656.730280 B = 9584.865703 C =10500.120177 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.079 4.079 3 C -0.124 4.124 4 C 0.151 3.849 5 N -0.606 5.606 6 C -0.337 4.337 7 H 0.037 0.963 8 C -0.044 4.044 9 N -0.937 5.937 10 Si 1.051 2.949 11 H -0.299 1.299 12 H -0.246 1.246 13 H -0.300 1.300 14 C 0.143 3.857 15 C -0.133 4.133 16 C 0.176 3.824 17 H 0.057 0.943 18 N -0.704 5.704 19 C 0.486 3.514 20 O -0.580 6.580 21 C 0.136 3.864 22 N -0.604 5.604 23 C 0.069 3.931 24 C 0.532 3.468 25 O -0.504 6.504 26 N -0.675 5.675 27 C 0.703 3.297 28 O -0.582 6.582 29 H 0.063 0.937 30 H 0.077 0.923 31 H 0.045 0.955 32 H 0.041 0.959 33 H 0.078 0.922 34 H 0.047 0.953 35 H 0.020 0.980 36 H 0.054 0.946 37 H 0.255 0.745 38 H 0.044 0.956 39 H 0.025 0.975 40 H 0.060 0.940 41 H 0.069 0.931 42 H 0.416 0.584 43 H 0.137 0.863 44 H 0.173 0.827 45 H 0.172 0.828 46 H 0.131 0.869 47 H 0.437 0.563 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.545 5.647 -21.553 26.608 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.081 4.081 3 C -0.181 4.181 4 C 0.025 3.975 5 N -0.330 5.330 6 C -0.466 4.466 7 H 0.054 0.946 8 C -0.242 4.242 9 N -0.577 5.577 10 Si 0.878 3.122 11 H -0.227 1.227 12 H -0.171 1.171 13 H -0.227 1.227 14 C 0.017 3.983 15 C -0.173 4.173 16 C 0.071 3.929 17 H 0.075 0.925 18 N -0.357 5.357 19 C 0.272 3.728 20 O -0.459 6.459 21 C 0.011 3.989 22 N -0.341 5.341 23 C -0.056 4.056 24 C 0.320 3.680 25 O -0.376 6.376 26 N -0.344 5.344 27 C 0.404 3.596 28 O -0.458 6.458 29 H 0.082 0.918 30 H 0.095 0.905 31 H 0.064 0.936 32 H 0.060 0.940 33 H 0.097 0.903 34 H 0.066 0.934 35 H 0.038 0.962 36 H 0.072 0.928 37 H 0.064 0.936 38 H 0.062 0.938 39 H 0.042 0.958 40 H 0.078 0.922 41 H 0.088 0.912 42 H 0.254 0.746 43 H 0.155 0.845 44 H 0.190 0.810 45 H 0.189 0.811 46 H 0.148 0.852 47 H 0.280 0.720 Dipole moment (debyes) X Y Z Total from point charges -13.435 3.488 -21.497 25.589 hybrid contribution -1.001 0.876 0.618 1.467 sum -14.436 4.364 -20.879 25.757 Atomic orbital electron populations 1.21752 0.92392 1.01730 1.02927 1.21173 0.96397 0.96560 0.93984 1.21707 1.00821 0.93913 1.01677 1.21153 0.83198 0.96981 0.96135 1.44361 1.01419 1.72085 1.15132 1.19860 1.00142 1.14664 1.11981 0.94565 1.26915 0.91944 1.07548 0.97839 1.70984 1.30854 1.06432 1.49406 0.84149 0.75653 0.74897 0.77488 1.22679 1.17074 1.22696 1.21208 0.96289 0.94790 0.86026 1.22237 0.96026 1.01477 0.97517 1.20537 0.92391 0.95966 0.84026 0.92456 1.45971 1.65405 1.15216 1.09079 1.21902 0.77539 0.87322 0.86045 1.90732 1.51456 1.18384 1.85362 1.21495 1.07012 0.89936 0.80416 1.47086 1.14588 1.41860 1.30547 1.22790 0.92342 1.00641 0.89816 1.21130 0.80947 0.82485 0.83432 1.90861 1.65752 1.53423 1.27546 1.44296 1.18932 1.41106 1.30069 1.15957 0.84302 0.79251 0.80138 1.91003 1.27057 1.70740 1.57024 0.91829 0.90452 0.93616 0.94025 0.90312 0.93417 0.96171 0.92770 0.93566 0.93781 0.95755 0.92163 0.91223 0.74589 0.84503 0.80964 0.81114 0.85153 0.71989 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.75 8.31 71.98 0.60 -2.15 16 2 C -0.08 -2.14 0.56 -52.10 -0.03 -2.17 16 3 C -0.12 -3.16 7.83 71.98 0.56 -2.60 16 4 C 0.15 5.60 5.20 86.37 0.45 6.05 16 5 N -0.61 -27.40 2.15 -699.93 -1.51 -28.90 16 6 C -0.34 -18.36 9.70 84.03 0.82 -17.55 16 7 H 0.04 2.15 8.06 -2.91 -0.02 2.13 16 8 C -0.04 -2.51 4.82 84.86 0.41 -2.10 16 9 N -0.94 -57.77 13.70 21.65 0.30 -57.48 16 10 Si 1.05 51.72 27.01 68.60 1.85 53.58 16 11 H -0.30 -14.62 7.11 99.48 0.71 -13.92 16 12 H -0.25 -11.06 4.73 99.48 0.47 -10.59 16 13 H -0.30 -14.97 7.11 99.48 0.71 -14.26 16 14 C 0.14 6.02 4.34 86.22 0.37 6.39 16 15 C -0.13 -4.35 5.29 30.53 0.16 -4.19 16 16 C 0.18 4.89 1.57 45.02 0.07 4.96 16 17 H 0.06 1.93 7.58 -2.39 -0.02 1.91 16 18 N -0.70 -12.85 4.29 -442.40 -1.90 -14.75 16 19 C 0.49 9.50 7.86 87.66 0.69 10.19 16 20 O -0.58 -17.62 16.09 -3.02 -0.05 -17.66 16 21 C 0.14 1.22 6.63 85.63 0.57 1.79 16 22 N -0.60 -7.88 2.51 -846.24 -2.12 -10.00 16 23 C 0.07 0.58 7.66 85.76 0.66 1.24 16 24 C 0.53 7.77 8.81 87.94 0.77 8.54 16 25 O -0.50 -10.52 18.02 -2.89 -0.05 -10.57 16 26 N -0.67 -10.23 5.70 -441.13 -2.52 -12.75 16 27 C 0.70 13.54 8.68 179.44 1.56 15.10 16 28 O -0.58 -15.80 17.71 -3.85 -0.07 -15.86 16 29 H 0.06 1.27 8.14 -2.39 -0.02 1.25 16 30 H 0.08 1.23 7.37 -2.38 -0.02 1.21 16 31 H 0.04 1.05 8.14 -2.39 -0.02 1.03 16 32 H 0.04 1.37 5.97 -2.39 -0.01 1.35 16 33 H 0.08 1.31 6.58 -2.38 -0.02 1.30 16 34 H 0.05 1.26 8.14 -2.39 -0.02 1.24 16 35 H 0.02 0.76 8.14 -2.38 -0.02 0.74 16 36 H 0.05 2.07 7.93 -2.39 -0.02 2.05 16 37 H 0.26 15.71 8.73 -92.71 -0.81 14.90 16 38 H 0.04 2.05 5.83 -2.38 -0.01 2.04 16 39 H 0.02 1.06 6.60 -2.38 -0.02 1.05 16 40 H 0.06 1.94 8.14 -2.39 -0.02 1.92 16 41 H 0.07 2.27 6.33 -2.39 -0.02 2.25 16 42 H 0.42 4.58 6.66 -92.71 -0.62 3.96 16 43 H 0.14 0.91 8.03 -2.38 -0.02 0.89 16 44 H 0.17 -0.20 8.14 -2.38 -0.02 -0.22 16 45 H 0.17 -0.02 8.14 -2.39 -0.02 -0.04 16 46 H 0.13 1.19 8.14 -2.39 -0.02 1.17 16 47 H 0.44 5.37 8.96 -92.70 -0.83 4.54 16 Total: -1.00 -83.91 373.16 0.89 -83.02 By element: Atomic # 1 Polarization: 8.60 SS G_CDS: -0.70 Total: 7.90 kcal Atomic # 6 Polarization: 15.83 SS G_CDS: 7.66 Total: 23.49 kcal Atomic # 7 Polarization: -116.13 SS G_CDS: -7.75 Total: -123.88 kcal Atomic # 8 Polarization: -43.93 SS G_CDS: -0.17 Total: -44.10 kcal Atomic # 14 Polarization: 51.72 SS G_CDS: 1.85 Total: 53.58 kcal Total: -83.91 0.89 -83.02 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000941104136.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.175 kcal (2) G-P(sol) polarization free energy of solvation -83.908 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.733 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.893 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.015 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.840 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds