Wall clock time and date at job start Tue Mar 31 2020 20:29:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53007 * 109.51982 * 2 1 4 4 C 1.53194 * 109.49906 * 239.92621 * 2 1 3 5 5 N 1.46929 * 108.77513 * 185.40927 * 4 2 1 6 6 C 1.36938 * 120.62869 * 233.58425 * 5 4 2 7 7 H 1.07999 * 119.99920 * 151.84738 * 6 5 4 8 8 C 1.38810 * 120.00196 * 331.84937 * 6 5 4 9 9 N 1.31622 * 119.99791 * 343.07345 * 8 6 5 10 10 Si 1.86800 * 120.00151 * 163.07204 * 8 6 5 11 11 H 1.48497 * 109.46872 * 359.97438 * 10 8 6 12 12 H 1.48499 * 109.47235 * 119.99807 * 10 8 6 13 13 H 1.48504 * 109.46936 * 240.00134 * 10 8 6 14 14 C 1.46922 * 118.73706 * 53.60847 * 5 4 2 15 15 C 1.53192 * 108.77723 * 306.38888 * 14 5 4 16 16 C 1.53034 * 109.50251 * 120.08369 * 2 1 3 17 17 H 1.08997 * 109.46010 * 61.29376 * 16 2 1 18 18 N 1.46503 * 109.46012 * 301.34005 * 16 2 1 19 19 C 1.34779 * 120.00153 * 154.99796 * 18 16 2 20 20 O 1.21278 * 119.99797 * 359.97438 * 19 18 16 21 21 C 1.50695 * 119.99877 * 180.02562 * 19 18 16 22 22 N 1.46501 * 109.46966 * 179.97438 * 21 19 18 23 23 C 1.34773 * 124.17913 * 89.99762 * 22 21 19 24 24 O 1.21239 * 127.15199 * 359.93368 * 23 22 21 25 25 C 1.51574 * 105.68765 * 179.97438 * 23 22 21 26 26 N 1.47313 * 103.59576 * 0.02562 * 25 23 22 27 27 C 1.33788 * 124.18093 * 269.69540 * 22 21 19 28 28 O 1.21543 * 123.76990 * 0.04356 * 27 22 21 29 29 H 1.08995 * 109.47183 * 299.91271 * 1 2 3 30 30 H 1.08999 * 109.47403 * 59.91475 * 1 2 3 31 31 H 1.09000 * 109.46726 * 179.91865 * 1 2 3 32 32 H 1.09000 * 109.47220 * 180.02562 * 3 2 1 33 33 H 1.08995 * 109.47368 * 300.08743 * 3 2 1 34 34 H 1.09004 * 109.46682 * 60.08458 * 3 2 1 35 35 H 1.08996 * 109.58187 * 305.19487 * 4 2 1 36 36 H 1.08996 * 109.58755 * 65.47716 * 4 2 1 37 37 H 0.96999 * 119.99934 * 180.02562 * 9 8 6 38 38 H 1.08999 * 109.58886 * 66.17693 * 14 5 4 39 39 H 1.08999 * 109.58628 * 186.46389 * 14 5 4 40 40 H 1.09001 * 109.49596 * 294.68971 * 15 14 5 41 41 H 1.08998 * 109.50241 * 174.58994 * 15 14 5 42 42 H 0.96999 * 119.99934 * 335.00213 * 18 16 2 43 43 H 1.08997 * 109.47299 * 299.99429 * 21 19 18 44 44 H 1.08998 * 109.47989 * 60.00032 * 21 19 18 45 45 H 1.09004 * 110.59918 * 118.52954 * 25 23 22 46 46 H 1.08997 * 110.60379 * 241.47646 * 25 23 22 47 47 H 0.97000 * 126.69315 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0412 1.4421 0.0000 4 6 2.0413 -0.7236 -1.2497 5 7 3.5047 -0.8289 -1.1697 6 6 4.2935 -0.3789 -2.1946 7 1 5.2961 -0.0322 -1.9921 8 6 3.8046 -0.3684 -3.4937 9 7 2.7413 -1.0801 -3.8024 10 14 4.6557 0.6557 -4.8037 11 1 5.8186 1.3585 -4.2046 12 1 5.1233 -0.2312 -5.8991 13 1 3.7013 1.6545 -5.3487 14 6 4.1053 -1.4265 0.0306 15 6 3.5709 -0.6950 1.2659 16 6 2.0409 -0.7231 1.2482 17 1 1.6968 -1.7572 1.2352 18 7 1.5266 -0.0531 2.4452 19 6 1.3986 -0.7384 3.5987 20 8 1.7087 -1.9100 3.6455 21 6 0.8690 -0.0493 4.8298 22 7 0.8256 -1.0019 5.9420 23 6 1.8419 -1.2073 6.8030 24 8 2.9239 -0.6603 6.8025 25 6 1.3512 -2.2652 7.7713 26 7 -0.0123 -2.5613 7.2989 27 6 -0.2298 -1.7711 6.2320 28 8 -1.2677 -1.7606 5.5996 29 1 -0.3633 0.5124 0.8907 30 1 -0.3634 0.5151 -0.8892 31 1 -0.3633 -1.0277 -0.0015 32 1 3.1312 1.4412 -0.0005 33 1 1.6771 1.9567 -0.8891 34 1 1.6795 1.9558 0.8908 35 1 1.6053 -1.7214 -1.2981 36 1 1.7615 -0.1591 -2.1390 37 1 2.3998 -1.0730 -4.7103 38 1 3.8376 -2.4816 0.0865 39 1 5.1898 -1.3265 -0.0151 40 1 3.9159 0.3390 1.2540 41 1 3.9335 -1.1896 2.1670 42 1 1.2781 0.8838 2.4077 43 1 1.5225 0.7834 5.0895 44 1 -0.1356 0.3249 4.6331 45 1 1.9776 -3.1556 7.7163 46 1 1.3285 -1.8734 8.7882 47 1 -0.6339 -3.1982 7.6848 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000941205602.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:29:01 Heat of formation + Delta-G solvation = -49.635968 kcal Electronic energy + Delta-G solvation = -30917.043096 eV Core-core repulsion = 26715.699595 eV Total energy + Delta-G solvation = -4201.343501 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -42.63243 -39.98668 -38.83694 -38.12636 -36.36563 -34.93452 -34.57016 -32.89121 -32.02541 -29.89761 -28.68678 -27.76158 -26.75625 -25.90770 -24.92024 -23.21843 -22.58514 -21.25304 -20.58762 -20.14892 -18.57151 -18.23716 -17.69379 -17.12639 -16.86087 -16.40118 -16.04133 -15.58156 -15.27283 -15.04955 -14.79001 -14.46101 -14.31017 -14.20577 -13.91521 -13.67611 -13.51016 -13.30595 -13.17659 -12.82236 -12.45746 -12.20448 -11.63973 -11.50244 -11.31768 -11.29513 -11.06490 -10.88729 -10.72265 -10.63963 -10.58158 -10.55802 -10.21308 -10.08861 -9.97406 -9.89099 -9.73513 -9.62332 -9.34827 -8.71214 -8.45583 -6.66559 -5.79144 -3.21234 1.34703 1.76395 2.62600 2.66824 2.80940 3.34440 3.37607 3.45012 3.46837 3.66271 4.40145 4.49287 4.59659 4.66113 4.76287 4.87163 5.10197 5.21083 5.26994 5.29360 5.41411 5.56477 5.58558 5.87101 5.94577 6.09190 6.09643 6.21043 6.31585 6.39717 6.41607 6.46456 6.49453 6.63819 6.69200 6.70827 6.83109 6.92148 6.98739 7.03576 7.05420 7.32045 7.56815 7.66794 7.80198 7.81148 8.27508 8.44833 9.21090 9.84221 10.41466 11.29534 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.025656 B = 0.002697 C = 0.002599 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1091.115431 B =10379.574020 C =10772.354901 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.097 4.097 3 C -0.127 4.127 4 C 0.187 3.813 5 N -0.589 5.589 6 C -0.249 4.249 7 H 0.066 0.934 8 C 0.003 3.997 9 N -0.902 5.902 10 Si 0.900 3.100 11 H -0.278 1.278 12 H -0.291 1.291 13 H -0.289 1.289 14 C 0.147 3.853 15 C -0.142 4.142 16 C 0.165 3.835 17 H 0.081 0.919 18 N -0.714 5.714 19 C 0.498 3.502 20 O -0.533 6.533 21 C 0.098 3.902 22 N -0.560 5.560 23 C 0.525 3.475 24 O -0.465 6.465 25 C 0.066 3.934 26 N -0.728 5.728 27 C 0.707 3.293 28 O -0.539 6.539 29 H 0.043 0.957 30 H 0.055 0.945 31 H 0.050 0.950 32 H 0.070 0.930 33 H 0.052 0.948 34 H 0.029 0.971 35 H 0.019 0.981 36 H 0.093 0.907 37 H 0.253 0.747 38 H 0.019 0.981 39 H 0.056 0.944 40 H 0.064 0.936 41 H 0.053 0.947 42 H 0.397 0.603 43 H 0.124 0.876 44 H 0.125 0.875 45 H 0.125 0.875 46 H 0.124 0.876 47 H 0.442 0.558 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.386 2.416 23.427 24.402 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.100 4.100 3 C -0.184 4.184 4 C 0.060 3.940 5 N -0.311 5.311 6 C -0.379 4.379 7 H 0.083 0.917 8 C -0.196 4.196 9 N -0.546 5.546 10 Si 0.730 3.270 11 H -0.203 1.203 12 H -0.218 1.218 13 H -0.216 1.216 14 C 0.020 3.980 15 C -0.182 4.182 16 C 0.061 3.939 17 H 0.099 0.901 18 N -0.365 5.365 19 C 0.281 3.719 20 O -0.409 6.409 21 C -0.027 4.027 22 N -0.306 5.306 23 C 0.312 3.688 24 O -0.334 6.334 25 C -0.062 4.062 26 N -0.393 5.393 27 C 0.408 3.592 28 O -0.412 6.412 29 H 0.062 0.938 30 H 0.075 0.925 31 H 0.069 0.931 32 H 0.089 0.911 33 H 0.071 0.929 34 H 0.048 0.952 35 H 0.037 0.963 36 H 0.111 0.889 37 H 0.063 0.937 38 H 0.037 0.963 39 H 0.074 0.926 40 H 0.083 0.917 41 H 0.071 0.929 42 H 0.232 0.768 43 H 0.142 0.858 44 H 0.143 0.857 45 H 0.143 0.857 46 H 0.142 0.858 47 H 0.286 0.714 Dipole moment (debyes) X Y Z Total from point charges -6.147 1.924 22.858 23.749 hybrid contribution -0.006 0.598 -0.596 0.844 sum -6.152 2.522 22.263 23.234 Atomic orbital electron populations 1.21761 0.95293 1.01410 1.00715 1.21579 0.94535 0.96840 0.97037 1.21747 1.02618 0.94625 0.99405 1.20811 0.83090 0.96762 0.93293 1.44059 1.01652 1.69213 1.16214 1.19195 0.97929 1.35072 0.85676 0.91666 1.25036 0.98514 0.99030 0.96980 1.70034 1.25679 1.40252 1.18673 0.86263 0.78932 0.79968 0.81866 1.20280 1.21781 1.21607 1.20869 0.96662 0.94248 0.86185 1.22437 0.94689 1.01642 0.99439 1.21039 0.93855 0.96796 0.82187 0.90121 1.46245 1.65581 1.14471 1.10224 1.20597 0.78751 0.87676 0.84836 1.90721 1.49661 1.15985 1.84547 1.21504 1.05761 0.91139 0.84311 1.45787 1.16215 1.39519 1.29089 1.20891 0.83543 0.82630 0.81687 1.90843 1.19899 1.50780 1.71907 1.22445 0.84656 0.99668 0.99396 1.45340 1.17162 1.44418 1.32416 1.15760 0.83134 0.79096 0.81215 1.91035 1.26617 1.69493 1.54036 0.93794 0.92548 0.93054 0.91072 0.92875 0.95157 0.96306 0.88886 0.93685 0.96338 0.92551 0.91750 0.92863 0.76783 0.85820 0.85665 0.85695 0.85831 0.71382 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.10 8.31 37.16 0.31 -1.79 16 2 C -0.10 -1.73 0.56 -154.39 -0.09 -1.81 16 3 C -0.13 -2.09 7.83 37.16 0.29 -1.80 16 4 C 0.19 4.30 3.98 -3.71 -0.01 4.28 16 5 N -0.59 -14.35 2.43 -172.32 -0.42 -14.76 16 6 C -0.25 -6.66 9.58 -15.06 -0.14 -6.80 16 7 H 0.07 1.73 7.88 -52.49 -0.41 1.32 16 8 C 0.00 0.08 4.92 -17.43 -0.09 -0.01 16 9 N -0.90 -25.76 11.19 55.49 0.62 -25.14 16 10 Si 0.90 21.40 29.59 -169.99 -5.03 16.37 16 11 H -0.28 -6.47 7.11 56.52 0.40 -6.06 16 12 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 13 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 14 C 0.15 3.16 6.52 -3.71 -0.02 3.14 16 15 C -0.14 -2.59 5.31 -26.61 -0.14 -2.73 16 16 C 0.16 2.85 1.57 -67.89 -0.11 2.74 16 17 H 0.08 1.62 7.58 -51.93 -0.39 1.23 16 18 N -0.71 -9.84 4.29 -53.77 -0.23 -10.07 16 19 C 0.50 7.23 7.86 -10.99 -0.09 7.14 16 20 O -0.53 -9.97 16.09 5.56 0.09 -9.88 16 21 C 0.10 1.02 6.18 -5.20 -0.03 0.99 16 22 N -0.56 -6.12 2.09 -122.03 -0.26 -6.38 16 23 C 0.53 5.21 8.32 -10.56 -0.09 5.12 16 24 O -0.47 -5.95 17.76 5.59 0.10 -5.85 16 25 C 0.07 0.34 7.97 -4.32 -0.03 0.30 16 26 N -0.73 -4.83 6.58 -65.74 -0.43 -5.26 16 27 C 0.71 7.98 8.62 -88.02 -0.76 7.22 16 28 O -0.54 -8.04 17.48 5.33 0.09 -7.95 16 29 H 0.04 0.58 7.36 -51.93 -0.38 0.20 16 30 H 0.06 0.88 8.14 -51.93 -0.42 0.45 16 31 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 32 H 0.07 1.32 5.97 -51.93 -0.31 1.01 16 33 H 0.05 0.91 8.14 -51.93 -0.42 0.49 16 34 H 0.03 0.39 6.58 -51.93 -0.34 0.05 16 35 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 36 H 0.09 2.39 6.07 -51.93 -0.31 2.08 16 37 H 0.25 7.00 8.31 -40.82 -0.34 6.67 16 38 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 39 H 0.06 1.18 7.93 -51.93 -0.41 0.77 16 40 H 0.06 1.15 6.33 -51.93 -0.33 0.82 16 41 H 0.05 0.98 8.14 -51.93 -0.42 0.55 16 42 H 0.40 4.36 6.66 -40.82 -0.27 4.09 16 43 H 0.12 0.98 8.01 -51.93 -0.42 0.57 16 44 H 0.13 1.07 7.85 -51.93 -0.41 0.67 16 45 H 0.13 0.46 8.14 -51.93 -0.42 0.03 16 46 H 0.12 0.22 8.14 -51.93 -0.42 -0.20 16 47 H 0.44 1.77 8.96 -40.82 -0.37 1.40 16 LS Contribution 376.98 15.07 5.68 5.68 Total: -1.00 -36.11 376.98 -7.66 -43.77 By element: Atomic # 1 Polarization: 10.34 SS G_CDS: -6.88 Total: 3.46 kcal Atomic # 6 Polarization: 17.00 SS G_CDS: -1.00 Total: 16.00 kcal Atomic # 7 Polarization: -60.89 SS G_CDS: -0.72 Total: -61.61 kcal Atomic # 8 Polarization: -23.96 SS G_CDS: 0.28 Total: -23.68 kcal Atomic # 14 Polarization: 21.40 SS G_CDS: -5.03 Total: 16.37 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -36.11 -7.66 -43.77 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000941205602.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.862 kcal (2) G-P(sol) polarization free energy of solvation -36.113 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.975 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.661 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.774 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.636 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds