Wall clock time and date at job start Tue Mar 31 2020 21:31:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.36935 * 119.99971 * 2 1 4 4 H 1.08006 * 119.99598 * 149.23467 * 3 2 1 5 5 C 1.38808 * 119.99932 * 329.23971 * 3 2 1 6 6 N 1.31618 * 119.99990 * 152.85089 * 5 3 2 7 7 Si 1.86799 * 119.99997 * 332.84918 * 5 3 2 8 8 H 1.48499 * 109.47160 * 94.47863 * 7 5 3 9 9 H 1.48509 * 109.46902 * 214.47919 * 7 5 3 10 10 H 1.48499 * 109.47212 * 334.47712 * 7 5 3 11 11 C 1.46500 * 119.99782 * 180.02562 * 2 1 3 12 12 H 1.09006 * 110.63870 * 179.30049 * 11 2 1 13 13 C 1.55153 * 110.72181 * 56.16062 * 11 2 1 14 14 C 1.54913 * 101.58328 * 205.95240 * 13 11 2 15 15 N 1.47427 * 104.82923 * 37.00948 * 14 13 11 16 16 C 1.34779 * 125.65166 * 155.91887 * 15 14 13 17 17 O 1.21272 * 120.00055 * 179.97438 * 16 15 14 18 18 C 1.50702 * 119.99722 * 359.97013 * 16 15 14 19 19 N 1.46497 * 109.47116 * 179.97438 * 18 16 15 20 20 C 1.34535 * 126.68677 * 90.03043 * 19 18 16 21 21 O 1.21541 * 123.76988 * 359.96138 * 20 19 18 22 22 N 1.33791 * 112.45617 * 179.97438 * 20 19 18 23 23 C 1.34762 * 111.64291 * 359.97438 * 22 20 19 24 24 O 1.21239 * 127.15366 * 180.02562 * 23 22 20 25 25 C 1.47311 * 126.69373 * 269.71237 * 19 18 16 26 26 C 1.52997 * 110.59850 * 298.56670 * 25 19 18 27 27 C 1.53003 * 110.59590 * 61.50997 * 25 19 18 28 28 C 1.47025 * 108.70449 * 335.86915 * 15 14 13 29 29 H 1.08995 * 109.47496 * 275.63438 * 1 2 3 30 30 H 1.09000 * 109.47103 * 35.64386 * 1 2 3 31 31 H 1.09003 * 109.46984 * 155.63791 * 1 2 3 32 32 H 0.96998 * 120.00204 * 180.02562 * 6 5 3 33 33 H 1.08998 * 111.00574 * 324.02802 * 13 11 2 34 34 H 1.09000 * 111.01029 * 87.84515 * 13 11 2 35 35 H 1.09001 * 110.36608 * 155.84034 * 14 13 11 36 36 H 1.08996 * 110.36826 * 278.06073 * 14 13 11 37 37 H 1.09004 * 109.47163 * 300.00487 * 18 16 15 38 38 H 1.09003 * 109.47142 * 60.00056 * 18 16 15 39 39 H 0.96997 * 124.17647 * 180.02562 * 22 20 19 40 40 H 1.08997 * 109.47403 * 59.99480 * 26 25 19 41 41 H 1.09003 * 109.46771 * 179.97438 * 26 25 19 42 42 H 1.09004 * 109.47137 * 299.99731 * 26 25 19 43 43 H 1.08998 * 109.47116 * 60.00154 * 27 25 19 44 44 H 1.08996 * 109.46477 * 179.97438 * 27 25 19 45 45 H 1.08997 * 109.47292 * 299.99870 * 27 25 19 46 46 H 1.08992 * 109.88643 * 241.64354 * 28 15 14 47 47 H 1.09002 * 109.88413 * 120.47483 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.1157 1.2516 0.4785 5 6 1.6021 2.3034 -0.6148 6 7 1.9287 3.5091 -0.2000 7 14 0.4017 2.0962 -2.0310 8 1 -0.9886 2.1267 -1.5099 9 1 0.5897 3.2015 -3.0049 10 1 0.6497 0.7959 -2.7039 11 6 2.1974 -1.2688 -0.0006 12 1 3.2729 -1.0915 -0.0129 13 6 1.7721 -2.1477 -1.2063 14 6 2.0800 -3.5709 -0.6777 15 7 1.7254 -3.5271 0.7526 16 6 1.3890 -4.5890 1.5114 17 8 1.1152 -4.4349 2.6827 18 6 1.3529 -5.9678 0.9042 19 7 0.9629 -6.9417 1.9267 20 6 -0.2884 -7.3345 2.2268 21 8 -1.2814 -6.9136 1.6664 22 7 -0.3175 -8.2402 3.2112 23 6 0.9211 -8.5317 3.6551 24 8 1.2191 -9.3111 4.5346 25 6 1.8645 -7.6865 2.8224 26 6 2.8142 -8.5731 2.0144 27 6 2.6519 -6.7248 3.7147 28 6 1.8006 -2.1334 1.2146 29 1 -0.3634 0.1009 1.0226 30 1 -0.3633 0.8351 -0.5989 31 1 -0.3633 -0.9362 -0.4239 32 1 1.5457 4.2900 -0.6294 33 1 0.7094 -2.0313 -1.4190 34 1 2.3719 -1.9193 -2.0873 35 1 1.4691 -4.3090 -1.1975 36 1 3.1383 -3.8007 -0.8010 37 1 0.6297 -5.9870 0.0888 38 1 2.3408 -6.2214 0.5196 39 1 -1.1296 -8.6383 3.5614 40 1 3.4125 -7.9519 1.3479 41 1 3.4723 -9.1145 2.6941 42 1 2.2348 -9.2842 1.4257 43 1 1.9586 -6.1394 4.3186 44 1 3.3117 -7.2943 4.3691 45 1 3.2460 -6.0557 3.0923 46 1 2.5544 -2.0421 1.9965 47 1 0.8294 -1.8157 1.5941 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000972670118.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:31:29 Heat of formation + Delta-G solvation = -27.286663 kcal Electronic energy + Delta-G solvation = -30642.530245 eV Core-core repulsion = 26442.155883 eV Total energy + Delta-G solvation = -4200.374362 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -42.84448 -39.99271 -38.96822 -37.79031 -36.85438 -35.16295 -35.04249 -32.71823 -31.88076 -30.39228 -29.11075 -27.95544 -27.71323 -26.23465 -24.73550 -23.90103 -22.56690 -21.88091 -21.17081 -19.52086 -19.28158 -18.41859 -17.50818 -17.15191 -16.83442 -16.63879 -16.22511 -16.19566 -15.86090 -15.28390 -14.99249 -14.80082 -14.42943 -14.31124 -13.89505 -13.67397 -13.26248 -13.20623 -13.06826 -12.92398 -12.80403 -12.60916 -12.45132 -12.31181 -12.13901 -12.00859 -11.88896 -11.55200 -11.14815 -11.08543 -10.94608 -10.69537 -10.58482 -10.49979 -10.28580 -10.22559 -10.01555 -9.57824 -9.26109 -8.56198 -8.54423 -7.06331 -6.08742 -3.42675 1.24606 1.76366 2.51718 2.57987 2.67560 3.09967 3.26738 3.42150 3.45677 3.55942 4.08819 4.25850 4.40863 4.45504 4.48762 4.70991 4.81728 4.91564 5.00235 5.02585 5.09060 5.16808 5.27982 5.31279 5.33789 5.42685 5.47927 5.52507 5.64093 5.66617 5.78600 5.86108 5.92230 6.04438 6.13320 6.24197 6.34901 6.38644 6.55908 6.64872 6.66882 6.73387 6.99331 7.54036 7.77596 7.88555 8.12713 8.24615 8.85012 9.61685 9.97583 11.06664 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.026067 B = 0.002556 C = 0.002512 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1073.904100 B =10951.450529 C =11144.890088 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.108 3.892 2 N -0.596 5.596 3 C -0.276 4.276 4 H 0.083 0.917 5 C 0.035 3.965 6 N -0.892 5.892 7 Si 0.880 3.120 8 H -0.286 1.286 9 H -0.303 1.303 10 H -0.271 1.271 11 C 0.173 3.827 12 H 0.089 0.911 13 C -0.158 4.158 14 C 0.096 3.904 15 N -0.611 5.611 16 C 0.504 3.496 17 O -0.530 6.530 18 C 0.137 3.863 19 N -0.599 5.599 20 C 0.709 3.291 21 O -0.538 6.538 22 N -0.679 5.679 23 C 0.538 3.462 24 O -0.467 6.467 25 C 0.119 3.881 26 C -0.145 4.145 27 C -0.141 4.141 28 C 0.091 3.909 29 H 0.021 0.979 30 H 0.041 0.959 31 H 0.036 0.964 32 H 0.264 0.736 33 H 0.074 0.926 34 H 0.083 0.917 35 H 0.070 0.930 36 H 0.072 0.928 37 H 0.119 0.881 38 H 0.116 0.884 39 H 0.432 0.568 40 H 0.080 0.920 41 H 0.086 0.914 42 H 0.067 0.933 43 H 0.077 0.923 44 H 0.078 0.922 45 H 0.076 0.924 46 H 0.065 0.935 47 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.558 -25.818 0.517 25.950 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.037 4.037 2 N -0.317 5.317 3 C -0.404 4.404 4 H 0.101 0.899 5 C -0.166 4.166 6 N -0.533 5.533 7 Si 0.711 3.289 8 H -0.215 1.215 9 H -0.231 1.231 10 H -0.196 1.196 11 C 0.063 3.937 12 H 0.107 0.893 13 C -0.198 4.198 14 C -0.027 4.027 15 N -0.346 5.346 16 C 0.290 3.710 17 O -0.406 6.406 18 C 0.012 3.988 19 N -0.338 5.338 20 C 0.410 3.590 21 O -0.410 6.410 22 N -0.348 5.348 23 C 0.323 3.677 24 O -0.336 6.336 25 C 0.031 3.969 26 C -0.203 4.203 27 C -0.199 4.199 28 C -0.034 4.034 29 H 0.039 0.961 30 H 0.059 0.941 31 H 0.055 0.945 32 H 0.074 0.926 33 H 0.093 0.907 34 H 0.101 0.899 35 H 0.089 0.911 36 H 0.090 0.910 37 H 0.137 0.863 38 H 0.134 0.866 39 H 0.274 0.726 40 H 0.098 0.902 41 H 0.105 0.895 42 H 0.086 0.914 43 H 0.096 0.904 44 H 0.097 0.903 45 H 0.094 0.906 46 H 0.083 0.917 47 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 2.132 -25.632 1.234 25.751 hybrid contribution -1.239 -0.015 -0.733 1.440 sum 0.893 -25.648 0.501 25.668 Atomic orbital electron populations 1.21352 0.84568 0.98786 0.98957 1.44036 1.00607 1.01353 1.85724 1.18780 1.05117 0.85147 1.31317 0.89892 1.25286 0.98160 0.94948 0.98166 1.69927 1.45688 0.97672 1.39983 0.86951 0.80518 0.77164 0.84220 1.21471 1.23132 1.19636 1.21434 0.96989 0.85359 0.89900 0.89294 1.23438 1.02837 0.93031 1.00521 1.22418 1.00134 0.99436 0.80710 1.48517 1.67161 1.07719 1.11209 1.20618 0.77807 0.85848 0.86745 1.90714 1.48445 1.85391 1.16066 1.21109 1.03884 0.84787 0.89054 1.47180 1.05339 1.42744 1.38504 1.15748 0.84400 0.79027 0.79867 1.91041 1.35264 1.59508 1.55222 1.44315 1.11801 1.42229 1.36490 1.20726 0.83624 0.81122 0.82237 1.90827 1.80513 1.33808 1.28452 1.21580 0.91751 0.92727 0.90860 1.21989 0.98677 0.99196 1.00475 1.21966 1.00341 0.98196 0.99348 1.22704 1.02360 0.79132 0.99157 0.96071 0.94100 0.94496 0.92575 0.90692 0.89878 0.91124 0.91003 0.86285 0.86577 0.72599 0.90160 0.89529 0.91371 0.90393 0.90274 0.90556 0.91654 0.91084 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 2.30 8.46 59.85 0.51 2.81 16 2 N -0.60 -13.29 2.60 -171.39 -0.45 -13.73 16 3 C -0.28 -7.34 9.88 -15.06 -0.15 -7.49 16 4 H 0.08 2.35 8.06 -52.48 -0.42 1.93 16 5 C 0.04 0.99 5.28 -17.43 -0.09 0.90 16 6 N -0.89 -26.53 13.97 55.49 0.78 -25.75 16 7 Si 0.88 21.51 25.13 -169.99 -4.27 17.24 16 8 H -0.29 -6.90 6.59 56.52 0.37 -6.53 16 9 H -0.30 -7.55 7.11 56.52 0.40 -7.15 16 10 H -0.27 -6.36 7.11 56.52 0.40 -5.96 16 11 C 0.17 3.01 3.43 -66.10 -0.23 2.78 16 12 H 0.09 1.54 7.95 -51.93 -0.41 1.13 16 13 C -0.16 -2.20 6.59 -24.58 -0.16 -2.37 16 14 C 0.10 0.97 6.69 -2.53 -0.02 0.96 16 15 N -0.61 -8.01 3.33 -170.52 -0.57 -8.58 16 16 C 0.50 6.61 7.51 -10.98 -0.08 6.52 16 17 O -0.53 -8.95 15.06 5.56 0.08 -8.86 16 18 C 0.14 1.20 5.34 -5.19 -0.03 1.18 16 19 N -0.60 -5.89 1.99 -166.45 -0.33 -6.22 16 20 C 0.71 8.42 8.68 -88.01 -0.76 7.65 16 21 O -0.54 -8.29 17.71 5.33 0.09 -8.19 16 22 N -0.68 -6.39 5.70 -15.79 -0.09 -6.48 16 23 C 0.54 5.14 7.48 -10.56 -0.08 5.06 16 24 O -0.47 -5.36 18.02 5.59 0.10 -5.26 16 25 C 0.12 0.98 1.14 -132.09 -0.15 0.83 16 26 C -0.15 -0.73 8.80 37.16 0.33 -0.41 16 27 C -0.14 -1.22 7.58 37.16 0.28 -0.94 16 28 C 0.09 1.48 6.51 -3.06 -0.02 1.46 16 29 H 0.02 0.45 8.09 -51.93 -0.42 0.03 16 30 H 0.04 0.95 2.53 -51.93 -0.13 0.82 16 31 H 0.04 0.69 6.21 -51.93 -0.32 0.36 16 32 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 33 H 0.07 1.14 6.22 -51.93 -0.32 0.82 16 34 H 0.08 1.10 8.14 -51.93 -0.42 0.68 16 35 H 0.07 0.55 7.48 -51.93 -0.39 0.16 16 36 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 37 H 0.12 0.97 7.74 -51.93 -0.40 0.57 16 38 H 0.12 0.57 7.35 -51.93 -0.38 0.19 16 39 H 0.43 3.15 8.96 -40.82 -0.37 2.79 16 40 H 0.08 0.28 7.43 -51.93 -0.39 -0.10 16 41 H 0.09 0.39 8.14 -51.93 -0.42 -0.04 16 42 H 0.07 0.33 8.14 -51.93 -0.42 -0.10 16 43 H 0.08 0.89 7.55 -51.93 -0.39 0.50 16 44 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 45 H 0.08 0.65 7.90 -51.93 -0.41 0.24 16 46 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 47 H 0.07 1.34 7.04 -51.93 -0.37 0.97 16 LS Contribution 375.35 15.07 5.66 5.66 Total: -1.00 -35.39 375.35 -6.47 -41.86 By element: Atomic # 1 Polarization: 6.21 SS G_CDS: -6.82 Total: -0.62 kcal Atomic # 6 Polarization: 19.60 SS G_CDS: -0.66 Total: 18.95 kcal Atomic # 7 Polarization: -60.12 SS G_CDS: -0.66 Total: -60.78 kcal Atomic # 8 Polarization: -22.59 SS G_CDS: 0.28 Total: -22.31 kcal Atomic # 14 Polarization: 21.51 SS G_CDS: -4.27 Total: 17.24 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -35.39 -6.47 -41.86 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000972670118.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.574 kcal (2) G-P(sol) polarization free energy of solvation -35.386 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.812 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.475 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.861 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.287 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds