Wall clock time and date at job start Tue Mar 31 2020 21:31:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.36935 * 119.99971 * 2 1 4 4 H 1.08006 * 119.99598 * 149.23467 * 3 2 1 5 5 C 1.38808 * 119.99932 * 329.23971 * 3 2 1 6 6 N 1.31618 * 119.99990 * 152.85089 * 5 3 2 7 7 Si 1.86799 * 119.99997 * 332.84918 * 5 3 2 8 8 H 1.48499 * 109.47160 * 94.47863 * 7 5 3 9 9 H 1.48509 * 109.46902 * 214.47919 * 7 5 3 10 10 H 1.48499 * 109.47212 * 334.47712 * 7 5 3 11 11 C 1.46500 * 119.99782 * 180.02562 * 2 1 3 12 12 H 1.09006 * 110.63870 * 179.30049 * 11 2 1 13 13 C 1.55153 * 110.72181 * 56.16062 * 11 2 1 14 14 C 1.54913 * 101.58328 * 205.95240 * 13 11 2 15 15 N 1.47427 * 104.82923 * 37.00948 * 14 13 11 16 16 C 1.34779 * 125.65166 * 155.91887 * 15 14 13 17 17 O 1.21272 * 120.00055 * 179.97438 * 16 15 14 18 18 C 1.50702 * 119.99722 * 359.97013 * 16 15 14 19 19 N 1.46497 * 109.47116 * 179.97438 * 18 16 15 20 20 C 1.34535 * 126.68677 * 90.03043 * 19 18 16 21 21 O 1.21541 * 123.76988 * 359.96138 * 20 19 18 22 22 N 1.33791 * 112.45617 * 179.97438 * 20 19 18 23 23 C 1.34762 * 111.64291 * 359.97438 * 22 20 19 24 24 O 1.21239 * 127.15366 * 180.02562 * 23 22 20 25 25 C 1.47311 * 126.69373 * 269.71237 * 19 18 16 26 26 C 1.52997 * 110.59850 * 298.56670 * 25 19 18 27 27 C 1.53003 * 110.59590 * 61.50997 * 25 19 18 28 28 C 1.47025 * 108.70449 * 335.86915 * 15 14 13 29 29 H 1.08995 * 109.47496 * 275.63438 * 1 2 3 30 30 H 1.09000 * 109.47103 * 35.64386 * 1 2 3 31 31 H 1.09003 * 109.46984 * 155.63791 * 1 2 3 32 32 H 0.96998 * 120.00204 * 180.02562 * 6 5 3 33 33 H 1.08998 * 111.00574 * 324.02802 * 13 11 2 34 34 H 1.09000 * 111.01029 * 87.84515 * 13 11 2 35 35 H 1.09001 * 110.36608 * 155.84034 * 14 13 11 36 36 H 1.08996 * 110.36826 * 278.06073 * 14 13 11 37 37 H 1.09004 * 109.47163 * 300.00487 * 18 16 15 38 38 H 1.09003 * 109.47142 * 60.00056 * 18 16 15 39 39 H 0.96997 * 124.17647 * 180.02562 * 22 20 19 40 40 H 1.08997 * 109.47403 * 59.99480 * 26 25 19 41 41 H 1.09003 * 109.46771 * 179.97438 * 26 25 19 42 42 H 1.09004 * 109.47137 * 299.99731 * 26 25 19 43 43 H 1.08998 * 109.47116 * 60.00154 * 27 25 19 44 44 H 1.08996 * 109.46477 * 179.97438 * 27 25 19 45 45 H 1.08997 * 109.47292 * 299.99870 * 27 25 19 46 46 H 1.08992 * 109.88643 * 241.64354 * 28 15 14 47 47 H 1.09002 * 109.88413 * 120.47483 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.1157 1.2516 0.4785 5 6 1.6021 2.3034 -0.6148 6 7 1.9287 3.5091 -0.2000 7 14 0.4017 2.0962 -2.0310 8 1 -0.9886 2.1267 -1.5099 9 1 0.5897 3.2015 -3.0049 10 1 0.6497 0.7959 -2.7039 11 6 2.1974 -1.2688 -0.0006 12 1 3.2729 -1.0915 -0.0129 13 6 1.7721 -2.1477 -1.2063 14 6 2.0800 -3.5709 -0.6777 15 7 1.7254 -3.5271 0.7526 16 6 1.3890 -4.5890 1.5114 17 8 1.1152 -4.4349 2.6827 18 6 1.3529 -5.9678 0.9042 19 7 0.9629 -6.9417 1.9267 20 6 -0.2884 -7.3345 2.2268 21 8 -1.2814 -6.9136 1.6664 22 7 -0.3175 -8.2402 3.2112 23 6 0.9211 -8.5317 3.6551 24 8 1.2191 -9.3111 4.5346 25 6 1.8645 -7.6865 2.8224 26 6 2.8142 -8.5731 2.0144 27 6 2.6519 -6.7248 3.7147 28 6 1.8006 -2.1334 1.2146 29 1 -0.3634 0.1009 1.0226 30 1 -0.3633 0.8351 -0.5989 31 1 -0.3633 -0.9362 -0.4239 32 1 1.5457 4.2900 -0.6294 33 1 0.7094 -2.0313 -1.4190 34 1 2.3719 -1.9193 -2.0873 35 1 1.4691 -4.3090 -1.1975 36 1 3.1383 -3.8007 -0.8010 37 1 0.6297 -5.9870 0.0888 38 1 2.3408 -6.2214 0.5196 39 1 -1.1296 -8.6383 3.5614 40 1 3.4125 -7.9519 1.3479 41 1 3.4723 -9.1145 2.6941 42 1 2.2348 -9.2842 1.4257 43 1 1.9586 -6.1394 4.3186 44 1 3.3117 -7.2943 4.3691 45 1 3.2460 -6.0557 3.0923 46 1 2.5544 -2.0421 1.9965 47 1 0.8294 -1.8157 1.5941 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000972670118.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:31:28 Heat of formation + Delta-G solvation = -54.641244 kcal Electronic energy + Delta-G solvation = -30643.716429 eV Core-core repulsion = 26442.155883 eV Total energy + Delta-G solvation = -4201.560546 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -43.62813 -41.06485 -39.86263 -39.02531 -37.75060 -36.62558 -35.94966 -33.86601 -33.33897 -31.70370 -30.12612 -28.78030 -28.46630 -28.06621 -25.56533 -25.26000 -23.91639 -22.74811 -21.89179 -20.92660 -20.26714 -19.20842 -18.98632 -18.43921 -17.93590 -17.56761 -17.49209 -17.06282 -16.81286 -16.67628 -16.00419 -15.73233 -15.50793 -15.29873 -15.10594 -14.88994 -14.60558 -14.39996 -14.32325 -14.14130 -13.69825 -13.60028 -13.53345 -13.24315 -13.15719 -13.01021 -12.82469 -12.59140 -12.51276 -12.42528 -12.35271 -12.04784 -12.01539 -11.58063 -11.56247 -11.39141 -11.31308 -11.23410 -10.61917 -10.12249 -9.62686 -8.93944 -8.22005 -5.51935 0.44881 1.01168 1.32417 1.42727 1.53993 1.57932 1.76235 1.86107 2.14386 2.42708 2.84068 2.98840 3.31256 3.47403 3.48574 3.77577 3.80718 3.86580 4.01784 4.25633 4.26867 4.35877 4.41313 4.44778 4.52493 4.56583 4.63932 4.69675 4.74490 4.75665 4.83630 4.86658 4.94773 4.96948 5.03921 5.08655 5.14015 5.23168 5.28654 5.29056 5.39848 5.86520 5.86998 6.13905 6.23107 6.55861 6.90414 6.93254 7.13314 7.60091 7.99551 8.97669 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.026067 B = 0.002556 C = 0.002512 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1073.904100 B =10951.450529 C =11144.890088 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.109 3.891 2 N -0.609 5.609 3 C -0.262 4.262 4 H 0.051 0.949 5 C -0.024 4.024 6 N -0.945 5.945 7 Si 0.946 3.054 8 H -0.283 1.283 9 H -0.311 1.311 10 H -0.249 1.249 11 C 0.164 3.836 12 H 0.086 0.914 13 C -0.152 4.152 14 C 0.103 3.897 15 N -0.610 5.610 16 C 0.498 3.502 17 O -0.577 6.577 18 C 0.140 3.860 19 N -0.595 5.595 20 C 0.704 3.296 21 O -0.578 6.578 22 N -0.674 5.674 23 C 0.538 3.462 24 O -0.488 6.488 25 C 0.122 3.878 26 C -0.140 4.140 27 C -0.135 4.135 28 C 0.103 3.897 29 H 0.010 0.990 30 H 0.026 0.974 31 H 0.068 0.932 32 H 0.263 0.737 33 H 0.065 0.935 34 H 0.096 0.904 35 H 0.110 0.890 36 H 0.107 0.893 37 H 0.135 0.865 38 H 0.169 0.831 39 H 0.438 0.562 40 H 0.105 0.895 41 H 0.094 0.906 42 H 0.074 0.926 43 H 0.042 0.958 44 H 0.094 0.906 45 H 0.082 0.918 46 H 0.052 0.948 47 H 0.040 0.960 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.326 -29.335 -1.909 29.584 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.035 4.035 2 N -0.331 5.331 3 C -0.392 4.392 4 H 0.068 0.932 5 C -0.221 4.221 6 N -0.589 5.589 7 Si 0.776 3.224 8 H -0.211 1.211 9 H -0.240 1.240 10 H -0.173 1.173 11 C 0.057 3.943 12 H 0.104 0.896 13 C -0.191 4.191 14 C -0.019 4.019 15 N -0.345 5.345 16 C 0.287 3.713 17 O -0.456 6.456 18 C 0.015 3.985 19 N -0.332 5.332 20 C 0.405 3.595 21 O -0.455 6.455 22 N -0.343 5.343 23 C 0.324 3.676 24 O -0.358 6.358 25 C 0.034 3.966 26 C -0.198 4.198 27 C -0.193 4.193 28 C -0.023 4.023 29 H 0.029 0.971 30 H 0.044 0.956 31 H 0.086 0.914 32 H 0.072 0.928 33 H 0.083 0.917 34 H 0.114 0.886 35 H 0.128 0.872 36 H 0.125 0.875 37 H 0.153 0.847 38 H 0.186 0.814 39 H 0.281 0.719 40 H 0.124 0.876 41 H 0.113 0.887 42 H 0.093 0.907 43 H 0.061 0.939 44 H 0.113 0.887 45 H 0.101 0.899 46 H 0.071 0.929 47 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges 2.926 -29.235 -1.213 29.406 hybrid contribution -1.424 1.049 0.199 1.779 sum 1.502 -28.187 -1.015 28.245 Atomic orbital electron populations 1.21343 0.84105 0.99723 0.98351 1.44084 1.01087 1.01815 1.86148 1.18714 1.03865 0.86988 1.29598 0.93172 1.25913 1.00996 0.94561 1.00604 1.70055 1.48576 0.98579 1.41663 0.85880 0.78372 0.77541 0.80645 1.21092 1.24047 1.17303 1.21585 0.96432 0.83987 0.92316 0.89571 1.23326 1.02314 0.94470 0.99027 1.22660 1.03112 0.97714 0.78395 1.48558 1.67155 1.06111 1.12633 1.21517 0.76371 0.87229 0.86223 1.90712 1.50339 1.86217 1.18376 1.21417 1.07160 0.81500 0.88395 1.47344 1.04846 1.42426 1.38582 1.15959 0.84635 0.79054 0.79821 1.91008 1.36703 1.61037 1.56712 1.44279 1.12426 1.41718 1.35918 1.21011 0.83788 0.80860 0.81909 1.90820 1.80753 1.34900 1.29348 1.21767 0.91505 0.92583 0.90771 1.22049 0.98126 0.99059 1.00572 1.21910 0.99812 0.98183 0.99408 1.22262 1.00138 0.81547 0.98356 0.97138 0.95580 0.91352 0.92810 0.91669 0.88588 0.87204 0.87509 0.84741 0.81364 0.71858 0.87603 0.88708 0.90734 0.93856 0.88712 0.89932 0.92932 0.94163 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 4.58 8.46 127.77 1.08 5.66 16 2 N -0.61 -27.05 2.60 -696.15 -1.81 -28.86 16 3 C -0.26 -14.29 9.88 84.03 0.83 -13.46 16 4 H 0.05 2.99 8.06 -2.91 -0.02 2.96 16 5 C -0.02 -1.37 5.28 84.86 0.45 -0.92 16 6 N -0.94 -58.21 13.97 21.65 0.30 -57.91 16 7 Si 0.95 44.74 25.13 68.60 1.72 46.47 16 8 H -0.28 -13.08 6.59 99.48 0.66 -12.42 16 9 H -0.31 -15.03 7.11 99.48 0.71 -14.32 16 10 H -0.25 -10.76 7.11 99.48 0.71 -10.06 16 11 C 0.16 5.51 3.43 46.18 0.16 5.67 16 12 H 0.09 2.91 7.95 -2.38 -0.02 2.89 16 13 C -0.15 -3.65 6.59 31.99 0.21 -3.44 16 14 C 0.10 1.52 6.69 86.86 0.58 2.10 16 15 N -0.61 -14.17 3.33 -811.79 -2.70 -16.87 16 16 C 0.50 11.76 7.51 87.66 0.66 12.41 16 17 O -0.58 -19.21 15.06 -3.01 -0.05 -19.26 16 18 C 0.14 1.83 5.34 85.63 0.46 2.28 16 19 N -0.59 -10.01 1.99 -798.93 -1.59 -11.60 16 20 C 0.70 15.77 8.68 179.44 1.56 17.33 16 21 O -0.58 -17.35 17.71 -3.85 -0.07 -17.42 16 22 N -0.67 -12.13 5.70 -441.11 -2.52 -14.65 16 23 C 0.54 9.54 7.48 87.94 0.66 10.20 16 24 O -0.49 -10.65 18.02 -2.90 -0.05 -10.71 16 25 C 0.12 1.66 1.14 2.98 0.00 1.67 16 26 C -0.14 -0.80 8.80 71.98 0.63 -0.16 16 27 C -0.14 -2.11 7.58 71.98 0.55 -1.56 16 28 C 0.10 3.30 6.51 86.73 0.56 3.86 16 29 H 0.01 0.45 8.09 -2.39 -0.02 0.43 16 30 H 0.03 1.18 2.53 -2.39 -0.01 1.18 16 31 H 0.07 2.41 6.21 -2.39 -0.01 2.40 16 32 H 0.26 15.37 8.31 -92.71 -0.77 14.60 16 33 H 0.06 1.72 6.22 -2.39 -0.01 1.71 16 34 H 0.10 2.11 8.14 -2.39 -0.02 2.09 16 35 H 0.11 0.91 7.48 -2.39 -0.02 0.89 16 36 H 0.11 0.97 8.14 -2.39 -0.02 0.95 16 37 H 0.13 1.49 7.74 -2.38 -0.02 1.47 16 38 H 0.17 0.47 7.35 -2.39 -0.02 0.45 16 39 H 0.44 6.27 8.96 -92.71 -0.83 5.44 16 40 H 0.11 0.10 7.43 -2.39 -0.02 0.08 16 41 H 0.09 0.45 8.14 -2.39 -0.02 0.43 16 42 H 0.07 0.38 8.14 -2.39 -0.02 0.37 16 43 H 0.04 0.99 7.55 -2.39 -0.02 0.97 16 44 H 0.09 1.16 8.14 -2.39 -0.02 1.14 16 45 H 0.08 1.18 7.90 -2.39 -0.02 1.17 16 46 H 0.05 1.78 8.14 -2.39 -0.02 1.76 16 47 H 0.04 1.54 7.04 -2.39 -0.02 1.52 16 Total: -1.00 -82.82 375.35 1.76 -81.06 By element: Atomic # 1 Polarization: 7.97 SS G_CDS: 0.13 Total: 8.10 kcal Atomic # 6 Polarization: 33.26 SS G_CDS: 8.39 Total: 41.65 kcal Atomic # 7 Polarization: -121.58 SS G_CDS: -8.32 Total: -129.89 kcal Atomic # 8 Polarization: -47.21 SS G_CDS: -0.17 Total: -47.38 kcal Atomic # 14 Polarization: 44.74 SS G_CDS: 1.72 Total: 46.47 kcal Total: -82.82 1.76 -81.06 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000972670118.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.419 kcal (2) G-P(sol) polarization free energy of solvation -82.817 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.398 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.757 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.060 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.641 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds