Wall clock time and date at job start Tue Mar 31 2020 21:31:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.36933 * 120.00064 * 2 1 4 4 H 1.08005 * 120.00172 * 159.54307 * 3 2 1 5 5 C 1.38811 * 120.00045 * 339.27141 * 3 2 1 6 6 N 1.31615 * 119.99753 * 345.39558 * 5 3 2 7 7 Si 1.86793 * 120.00249 * 165.40018 * 5 3 2 8 8 H 1.48503 * 109.47241 * 94.71577 * 7 5 3 9 9 H 1.48495 * 109.47390 * 214.71587 * 7 5 3 10 10 H 1.48503 * 109.47342 * 334.71658 * 7 5 3 11 11 C 1.46506 * 120.00282 * 179.97438 * 2 1 3 12 12 H 1.08996 * 110.64199 * 180.69949 * 11 2 1 13 13 C 1.55150 * 110.71768 * 303.84440 * 11 2 1 14 14 C 1.55126 * 101.48429 * 153.73139 * 13 11 2 15 15 N 1.47423 * 104.94115 * 323.21806 * 14 13 11 16 16 C 1.34776 * 125.64634 * 204.03646 * 15 14 13 17 17 O 1.21281 * 120.00115 * 179.97438 * 16 15 14 18 18 C 1.50701 * 120.00261 * 359.96227 * 16 15 14 19 19 N 1.46495 * 109.47265 * 179.97438 * 18 16 15 20 20 C 1.33787 * 124.18004 * 269.70322 * 19 18 16 21 21 O 1.21535 * 123.77409 * 0.03643 * 20 19 18 22 22 N 1.34527 * 112.46074 * 179.86364 * 20 19 18 23 23 C 1.47322 * 106.61738 * 0.38132 * 22 20 19 24 24 C 1.52999 * 110.59782 * 241.25106 * 23 22 20 25 25 C 1.53002 * 110.59984 * 118.30316 * 23 22 20 26 26 C 1.34774 * 124.17825 * 90.00067 * 19 18 16 27 27 O 1.21237 * 127.15476 * 0.02562 * 26 19 18 28 28 C 1.47018 * 108.70556 * 24.00805 * 15 14 13 29 29 H 1.08992 * 109.47442 * 84.83706 * 1 2 3 30 30 H 1.09002 * 109.46755 * 204.84380 * 1 2 3 31 31 H 1.09004 * 109.47168 * 324.83504 * 1 2 3 32 32 H 0.96998 * 119.99939 * 180.02562 * 6 5 3 33 33 H 1.08999 * 111.00574 * 271.93259 * 13 11 2 34 34 H 1.09002 * 111.01035 * 35.78624 * 13 11 2 35 35 H 1.09003 * 110.41858 * 204.28780 * 14 13 11 36 36 H 1.08999 * 110.29937 * 82.09023 * 14 13 11 37 37 H 1.08996 * 109.46879 * 299.99856 * 18 16 15 38 38 H 1.08998 * 109.46766 * 59.99936 * 18 16 15 39 39 H 0.97002 * 126.69590 * 180.12650 * 22 20 19 40 40 H 1.08998 * 109.46747 * 174.17025 * 24 23 22 41 41 H 1.09001 * 109.47358 * 294.17283 * 24 23 22 42 42 H 1.09007 * 109.46964 * 54.17210 * 24 23 22 43 43 H 1.08995 * 109.47259 * 305.83158 * 25 23 22 44 44 H 1.09009 * 109.46771 * 65.82712 * 25 23 22 45 45 H 1.08991 * 109.46928 * 185.82458 * 25 23 22 46 46 H 1.09002 * 109.88372 * 239.52374 * 28 15 14 47 47 H 1.08989 * 109.88837 * 118.35379 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1496 1.1859 0.0000 4 1 3.1786 1.2154 0.3269 5 6 1.5230 2.3491 -0.4255 6 7 0.3897 2.2803 -1.0912 7 14 2.2882 4.0120 -0.0534 8 1 3.1124 4.4475 -1.2094 9 1 1.2140 5.0076 0.1916 10 1 3.1466 3.9030 1.1534 11 6 2.1976 -1.2687 0.0006 12 1 3.2729 -1.0915 0.0129 13 6 1.7721 -2.1477 1.2062 14 6 2.0737 -3.5723 0.6716 15 7 1.7208 -3.5240 -0.7590 16 6 1.3812 -4.5829 -1.5205 17 8 1.1084 -4.4251 -2.6916 18 6 1.3408 -5.9631 -0.9168 19 7 0.9467 -6.9330 -1.9415 20 6 -0.3185 -7.2863 -2.1950 21 8 -1.2778 -6.8369 -1.5992 22 7 -0.4106 -8.1918 -3.1856 23 6 0.9658 -8.4718 -3.6299 24 6 1.1448 -8.0903 -5.1007 25 6 1.3138 -9.9451 -3.4082 26 6 1.8143 -7.5839 -2.7415 27 8 3.0223 -7.4815 -2.7483 28 6 1.8000 -2.1293 -1.2173 29 1 -0.3634 0.0925 -1.0234 30 1 -0.3633 -0.9326 0.4318 31 1 -0.3634 0.8401 0.5919 32 1 -0.0480 3.0931 -1.3888 33 1 2.3745 -1.9220 2.0861 34 1 0.7100 -2.0289 1.4209 35 1 1.4605 -4.3103 1.1888 36 1 3.1312 -3.8061 0.7938 37 1 2.3278 -6.2207 -0.5327 38 1 0.6174 -5.9821 -0.1017 39 1 -1.2244 -8.5865 -3.5363 40 1 2.1916 -8.2069 -5.3814 41 1 0.5275 -8.7391 -5.7221 42 1 0.8429 -7.0531 -5.2463 43 1 1.1304 -10.2091 -2.3667 44 1 0.6939 -10.5661 -4.0550 45 1 2.3649 -10.1097 -3.6451 46 1 0.8300 -1.8083 -1.5972 47 1 2.5549 -2.0379 -1.9981 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000980322047.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:31:33 Heat of formation + Delta-G solvation = -35.874653 kcal Electronic energy + Delta-G solvation = -30400.474654 eV Core-core repulsion = 26199.727889 eV Total energy + Delta-G solvation = -4200.746765 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -42.81792 -39.75764 -38.83974 -37.57440 -36.79474 -35.35913 -34.82194 -31.95534 -31.64428 -29.92729 -29.22865 -28.00010 -27.48637 -26.04659 -24.55506 -23.66211 -22.41872 -22.15027 -20.85702 -19.39128 -19.14502 -18.18933 -17.57801 -17.09632 -16.64666 -16.33258 -16.00257 -15.91453 -15.76369 -14.95262 -14.88518 -14.65471 -14.38334 -14.18797 -13.68722 -13.43351 -13.31860 -13.10895 -12.92443 -12.74373 -12.69774 -12.54253 -12.30818 -12.15179 -12.04599 -11.85159 -11.54424 -11.05570 -10.94019 -10.79485 -10.62222 -10.54111 -10.46285 -10.39098 -10.29740 -9.89783 -9.84079 -9.83291 -9.49533 -8.58116 -8.37225 -6.85010 -5.76634 -3.22318 1.38806 1.81679 2.66842 2.72311 2.80885 3.23895 3.36760 3.43589 3.45416 3.57586 4.09594 4.31403 4.44068 4.48612 4.63614 4.90645 4.96111 4.99236 5.05092 5.07424 5.15805 5.20375 5.23583 5.30507 5.42916 5.48146 5.48936 5.57156 5.67988 5.75782 5.86755 5.97275 6.32264 6.34789 6.47888 6.49567 6.63258 6.76959 6.81518 6.84950 7.10448 7.34671 7.69741 7.70753 7.78107 7.88662 8.23993 8.33459 9.17510 9.80517 10.28510 11.27942 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.024646 B = 0.002419 C = 0.002408 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1135.798601 B =11573.547810 C =11627.391265 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.160 3.840 2 N -0.586 5.586 3 C -0.261 4.261 4 H 0.072 0.928 5 C 0.003 3.997 6 N -0.903 5.903 7 Si 0.907 3.093 8 H -0.288 1.288 9 H -0.290 1.290 10 H -0.279 1.279 11 C 0.173 3.827 12 H 0.079 0.921 13 C -0.152 4.152 14 C 0.096 3.904 15 N -0.608 5.608 16 C 0.512 3.488 17 O -0.536 6.536 18 C 0.103 3.897 19 N -0.560 5.560 20 C 0.709 3.291 21 O -0.537 6.537 22 N -0.720 5.720 23 C 0.120 3.880 24 C -0.149 4.149 25 C -0.146 4.146 26 C 0.535 3.465 27 O -0.461 6.461 28 C 0.088 3.912 29 H 0.031 0.969 30 H 0.003 0.997 31 H 0.045 0.955 32 H 0.254 0.746 33 H 0.080 0.920 34 H 0.078 0.922 35 H 0.070 0.930 36 H 0.070 0.930 37 H 0.123 0.877 38 H 0.126 0.874 39 H 0.439 0.561 40 H 0.084 0.916 41 H 0.079 0.921 42 H 0.073 0.927 43 H 0.068 0.932 44 H 0.080 0.920 45 H 0.084 0.916 46 H 0.074 0.926 47 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.730 -26.280 -1.178 26.363 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.015 3.985 2 N -0.306 5.306 3 C -0.391 4.391 4 H 0.089 0.911 5 C -0.196 4.196 6 N -0.548 5.548 7 Si 0.736 3.264 8 H -0.215 1.215 9 H -0.216 1.216 10 H -0.204 1.204 11 C 0.062 3.938 12 H 0.098 0.902 13 C -0.192 4.192 14 C -0.027 4.027 15 N -0.342 5.342 16 C 0.297 3.703 17 O -0.413 6.413 18 C -0.022 4.022 19 N -0.306 5.306 20 C 0.410 3.590 21 O -0.410 6.410 22 N -0.385 5.385 23 C 0.030 3.970 24 C -0.207 4.207 25 C -0.204 4.204 26 C 0.322 3.678 27 O -0.330 6.330 28 C -0.036 4.036 29 H 0.049 0.951 30 H 0.021 0.979 31 H 0.064 0.936 32 H 0.064 0.936 33 H 0.098 0.902 34 H 0.097 0.903 35 H 0.088 0.912 36 H 0.088 0.912 37 H 0.141 0.859 38 H 0.144 0.856 39 H 0.284 0.716 40 H 0.102 0.898 41 H 0.098 0.902 42 H 0.092 0.908 43 H 0.087 0.913 44 H 0.099 0.901 45 H 0.103 0.897 46 H 0.092 0.908 47 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 1.631 -25.682 -1.524 25.779 hybrid contribution -0.093 0.888 -0.080 0.896 sum 1.538 -24.795 -1.604 24.894 Atomic orbital electron populations 1.20808 0.82311 0.95692 0.99648 1.43961 1.01965 0.99892 1.84780 1.19232 0.97242 0.84754 1.37840 0.91060 1.25023 0.97811 0.98577 0.98164 1.70098 1.18732 1.27042 1.38899 0.86216 0.78201 0.83866 0.78074 1.21475 1.21574 1.20419 1.21356 0.96450 0.85933 0.90044 0.90249 1.23390 1.02999 0.92803 1.00057 1.22460 1.00032 0.99556 0.80696 1.48486 1.66652 1.07896 1.11165 1.20240 0.77839 0.85580 0.86603 1.90716 1.49074 1.85336 1.16166 1.21473 1.04617 0.86061 0.90035 1.45853 1.08513 1.40008 1.36205 1.15755 0.82698 0.79657 0.80913 1.91034 1.37779 1.58338 1.53850 1.45617 1.08644 1.46032 1.38249 1.21461 0.81729 0.97077 0.96741 1.22018 1.04235 1.03562 0.90855 1.22012 1.03829 0.91127 1.03456 1.20787 0.87352 0.79750 0.79926 1.90796 1.11367 1.63914 1.66915 1.22966 1.02518 0.78400 0.99757 0.95085 0.97903 0.93622 0.93616 0.90157 0.90330 0.91183 0.91190 0.85871 0.85639 0.71633 0.89757 0.90209 0.90765 0.91331 0.90137 0.89675 0.90797 0.92087 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.16 3.92 7.69 59.84 0.46 4.38 16 2 N -0.59 -14.28 2.94 -171.39 -0.50 -14.78 16 3 C -0.26 -7.01 9.63 -15.06 -0.15 -7.15 16 4 H 0.07 1.84 7.83 -52.48 -0.41 1.43 16 5 C 0.00 0.09 5.07 -17.43 -0.09 0.00 16 6 N -0.90 -26.33 10.67 55.49 0.59 -25.74 16 7 Si 0.91 21.62 29.58 -169.99 -5.03 16.59 16 8 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 9 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 10 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 11 C 0.17 3.38 3.43 -66.09 -0.23 3.15 16 12 H 0.08 1.52 7.92 -51.93 -0.41 1.11 16 13 C -0.15 -2.33 6.62 -24.47 -0.16 -2.49 16 14 C 0.10 1.20 6.69 -2.41 -0.02 1.18 16 15 N -0.61 -9.98 3.33 -170.39 -0.57 -10.55 16 16 C 0.51 8.67 7.92 -10.99 -0.09 8.58 16 17 O -0.54 -11.26 16.76 5.56 0.09 -11.17 16 18 C 0.10 1.28 5.19 -5.20 -0.03 1.25 16 19 N -0.56 -7.17 2.09 -122.03 -0.26 -7.43 16 20 C 0.71 9.22 8.62 -88.02 -0.76 8.46 16 21 O -0.54 -8.85 17.48 5.33 0.09 -8.75 16 22 N -0.72 -6.19 5.90 -52.93 -0.31 -6.50 16 23 C 0.12 0.96 1.37 -132.09 -0.18 0.78 16 24 C -0.15 -1.04 8.99 37.16 0.33 -0.71 16 25 C -0.15 -0.70 8.99 37.16 0.33 -0.37 16 26 C 0.54 6.33 6.98 -10.56 -0.07 6.25 16 27 O -0.46 -6.41 17.76 5.59 0.10 -6.31 16 28 C 0.09 1.74 6.51 -3.06 -0.02 1.72 16 29 H 0.03 0.84 7.31 -51.93 -0.38 0.46 16 30 H 0.00 0.06 6.20 -51.93 -0.32 -0.27 16 31 H 0.05 1.20 7.23 -51.93 -0.38 0.82 16 32 H 0.25 7.18 8.31 -40.82 -0.34 6.84 16 33 H 0.08 1.10 8.14 -51.93 -0.42 0.68 16 34 H 0.08 1.30 6.21 -51.93 -0.32 0.98 16 35 H 0.07 0.69 7.48 -51.93 -0.39 0.30 16 36 H 0.07 0.74 8.14 -51.93 -0.42 0.31 16 37 H 0.12 1.20 8.00 -51.93 -0.42 0.78 16 38 H 0.13 1.34 7.56 -51.93 -0.39 0.95 16 39 H 0.44 2.56 8.96 -40.82 -0.37 2.19 16 40 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 41 H 0.08 0.34 8.14 -51.93 -0.42 -0.08 16 42 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 43 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 44 H 0.08 0.22 8.14 -51.92 -0.42 -0.20 16 45 H 0.08 0.39 8.14 -51.93 -0.42 -0.03 16 46 H 0.07 1.69 7.01 -51.93 -0.36 1.33 16 47 H 0.06 1.25 8.14 -51.94 -0.42 0.83 16 LS Contribution 384.82 15.07 5.80 5.80 Total: -1.00 -36.43 384.82 -7.74 -44.17 By element: Atomic # 1 Polarization: 6.73 SS G_CDS: -7.09 Total: -0.36 kcal Atomic # 6 Polarization: 25.68 SS G_CDS: -0.66 Total: 25.02 kcal Atomic # 7 Polarization: -63.95 SS G_CDS: -1.05 Total: -64.99 kcal Atomic # 8 Polarization: -26.52 SS G_CDS: 0.29 Total: -26.23 kcal Atomic # 14 Polarization: 21.62 SS G_CDS: -5.03 Total: 16.59 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -36.43 -7.74 -44.17 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000980322047.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.292 kcal (2) G-P(sol) polarization free energy of solvation -36.431 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.139 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.735 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.166 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.875 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds