Wall clock time and date at job start Tue Mar 31 2020 21:31:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.36933 * 120.00064 * 2 1 4 4 H 1.08005 * 120.00172 * 159.54307 * 3 2 1 5 5 C 1.38811 * 120.00045 * 339.27141 * 3 2 1 6 6 N 1.31615 * 119.99753 * 345.39558 * 5 3 2 7 7 Si 1.86793 * 120.00249 * 165.40018 * 5 3 2 8 8 H 1.48503 * 109.47241 * 94.71577 * 7 5 3 9 9 H 1.48495 * 109.47390 * 214.71587 * 7 5 3 10 10 H 1.48503 * 109.47342 * 334.71658 * 7 5 3 11 11 C 1.46506 * 120.00282 * 179.97438 * 2 1 3 12 12 H 1.08996 * 110.64199 * 180.69949 * 11 2 1 13 13 C 1.55150 * 110.71768 * 303.84440 * 11 2 1 14 14 C 1.55126 * 101.48429 * 153.73139 * 13 11 2 15 15 N 1.47423 * 104.94115 * 323.21806 * 14 13 11 16 16 C 1.34776 * 125.64634 * 204.03646 * 15 14 13 17 17 O 1.21281 * 120.00115 * 179.97438 * 16 15 14 18 18 C 1.50701 * 120.00261 * 359.96227 * 16 15 14 19 19 N 1.46495 * 109.47265 * 179.97438 * 18 16 15 20 20 C 1.33787 * 124.18004 * 269.70322 * 19 18 16 21 21 O 1.21535 * 123.77409 * 0.03643 * 20 19 18 22 22 N 1.34527 * 112.46074 * 179.86364 * 20 19 18 23 23 C 1.47322 * 106.61738 * 0.38132 * 22 20 19 24 24 C 1.52999 * 110.59782 * 241.25106 * 23 22 20 25 25 C 1.53002 * 110.59984 * 118.30316 * 23 22 20 26 26 C 1.34774 * 124.17825 * 90.00067 * 19 18 16 27 27 O 1.21237 * 127.15476 * 0.02562 * 26 19 18 28 28 C 1.47018 * 108.70556 * 24.00805 * 15 14 13 29 29 H 1.08992 * 109.47442 * 84.83706 * 1 2 3 30 30 H 1.09002 * 109.46755 * 204.84380 * 1 2 3 31 31 H 1.09004 * 109.47168 * 324.83504 * 1 2 3 32 32 H 0.96998 * 119.99939 * 180.02562 * 6 5 3 33 33 H 1.08999 * 111.00574 * 271.93259 * 13 11 2 34 34 H 1.09002 * 111.01035 * 35.78624 * 13 11 2 35 35 H 1.09003 * 110.41858 * 204.28780 * 14 13 11 36 36 H 1.08999 * 110.29937 * 82.09023 * 14 13 11 37 37 H 1.08996 * 109.46879 * 299.99856 * 18 16 15 38 38 H 1.08998 * 109.46766 * 59.99936 * 18 16 15 39 39 H 0.97002 * 126.69590 * 180.12650 * 22 20 19 40 40 H 1.08998 * 109.46747 * 174.17025 * 24 23 22 41 41 H 1.09001 * 109.47358 * 294.17283 * 24 23 22 42 42 H 1.09007 * 109.46964 * 54.17210 * 24 23 22 43 43 H 1.08995 * 109.47259 * 305.83158 * 25 23 22 44 44 H 1.09009 * 109.46771 * 65.82712 * 25 23 22 45 45 H 1.08991 * 109.46928 * 185.82458 * 25 23 22 46 46 H 1.09002 * 109.88372 * 239.52374 * 28 15 14 47 47 H 1.08989 * 109.88837 * 118.35379 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1496 1.1859 0.0000 4 1 3.1786 1.2154 0.3269 5 6 1.5230 2.3491 -0.4255 6 7 0.3897 2.2803 -1.0912 7 14 2.2882 4.0120 -0.0534 8 1 3.1124 4.4475 -1.2094 9 1 1.2140 5.0076 0.1916 10 1 3.1466 3.9030 1.1534 11 6 2.1976 -1.2687 0.0006 12 1 3.2729 -1.0915 0.0129 13 6 1.7721 -2.1477 1.2062 14 6 2.0737 -3.5723 0.6716 15 7 1.7208 -3.5240 -0.7590 16 6 1.3812 -4.5829 -1.5205 17 8 1.1084 -4.4251 -2.6916 18 6 1.3408 -5.9631 -0.9168 19 7 0.9467 -6.9330 -1.9415 20 6 -0.3185 -7.2863 -2.1950 21 8 -1.2778 -6.8369 -1.5992 22 7 -0.4106 -8.1918 -3.1856 23 6 0.9658 -8.4718 -3.6299 24 6 1.1448 -8.0903 -5.1007 25 6 1.3138 -9.9451 -3.4082 26 6 1.8143 -7.5839 -2.7415 27 8 3.0223 -7.4815 -2.7483 28 6 1.8000 -2.1293 -1.2173 29 1 -0.3634 0.0925 -1.0234 30 1 -0.3633 -0.9326 0.4318 31 1 -0.3634 0.8401 0.5919 32 1 -0.0480 3.0931 -1.3888 33 1 2.3745 -1.9220 2.0861 34 1 0.7100 -2.0289 1.4209 35 1 1.4605 -4.3103 1.1888 36 1 3.1312 -3.8061 0.7938 37 1 2.3278 -6.2207 -0.5327 38 1 0.6174 -5.9821 -0.1017 39 1 -1.2244 -8.5865 -3.5363 40 1 2.1916 -8.2069 -5.3814 41 1 0.5275 -8.7391 -5.7221 42 1 0.8429 -7.0531 -5.2463 43 1 1.1304 -10.2091 -2.3667 44 1 0.6939 -10.5661 -4.0550 45 1 2.3649 -10.1097 -3.6451 46 1 0.8300 -1.8083 -1.5972 47 1 2.5549 -2.0379 -1.9981 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000980322047.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:31:32 Heat of formation + Delta-G solvation = -63.323362 kcal Electronic energy + Delta-G solvation = -30401.664919 eV Core-core repulsion = 26199.727889 eV Total energy + Delta-G solvation = -4201.937031 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -43.71192 -41.11182 -39.82939 -39.03900 -37.72734 -36.61961 -36.32490 -33.58677 -32.54108 -31.48189 -30.41253 -28.88553 -28.46340 -28.09187 -25.59861 -25.07837 -23.96124 -23.06875 -21.72399 -20.92374 -20.44016 -19.10156 -18.98777 -18.72176 -17.77913 -17.42952 -17.29539 -16.94960 -16.78351 -16.59955 -16.08420 -15.72922 -15.46671 -15.35605 -15.06588 -14.97076 -14.52986 -14.34179 -14.16545 -13.73017 -13.67890 -13.50148 -13.30347 -13.24829 -13.14319 -13.13924 -12.77470 -12.59347 -12.52147 -12.43838 -12.24944 -12.12488 -12.03592 -11.81386 -11.75998 -11.45368 -11.27565 -10.83587 -10.65239 -10.54421 -9.76317 -8.87150 -7.85512 -5.33757 0.48047 0.91066 1.38270 1.47014 1.47751 1.58114 1.68445 2.02871 2.09804 2.50321 2.79059 3.25217 3.34108 3.47549 3.54094 3.75461 3.77663 3.84622 3.98542 4.03712 4.19696 4.24990 4.34116 4.40726 4.44515 4.58799 4.64159 4.64395 4.73880 4.76642 4.83714 4.85690 4.99991 5.08041 5.14245 5.18271 5.19119 5.28879 5.41678 5.61830 5.67052 5.74538 5.87573 6.22567 6.27797 6.41277 6.90551 7.00994 7.10020 7.81336 8.25728 9.18114 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.024646 B = 0.002419 C = 0.002408 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1135.798601 B =11573.547810 C =11627.391265 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.181 3.819 2 N -0.602 5.602 3 C -0.264 4.264 4 H 0.082 0.918 5 C -0.058 4.058 6 N -0.942 5.942 7 Si 0.973 3.027 8 H -0.289 1.289 9 H -0.296 1.296 10 H -0.263 1.263 11 C 0.165 3.835 12 H 0.086 0.914 13 C -0.140 4.140 14 C 0.098 3.902 15 N -0.607 5.607 16 C 0.503 3.497 17 O -0.589 6.589 18 C 0.108 3.892 19 N -0.568 5.568 20 C 0.702 3.298 21 O -0.579 6.579 22 N -0.700 5.700 23 C 0.126 3.874 24 C -0.147 4.147 25 C -0.139 4.139 26 C 0.526 3.474 27 O -0.487 6.487 28 C 0.099 3.901 29 H -0.008 1.008 30 H 0.030 0.970 31 H 0.021 0.979 32 H 0.247 0.753 33 H 0.106 0.894 34 H 0.065 0.935 35 H 0.109 0.891 36 H 0.104 0.896 37 H 0.156 0.844 38 H 0.147 0.853 39 H 0.453 0.547 40 H 0.089 0.911 41 H 0.114 0.886 42 H 0.043 0.957 43 H 0.069 0.931 44 H 0.110 0.890 45 H 0.090 0.910 46 H 0.032 0.968 47 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.178 -29.325 0.232 29.498 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 N -0.323 5.323 3 C -0.394 4.394 4 H 0.100 0.900 5 C -0.253 4.253 6 N -0.589 5.589 7 Si 0.801 3.199 8 H -0.216 1.216 9 H -0.223 1.223 10 H -0.187 1.187 11 C 0.056 3.944 12 H 0.105 0.895 13 C -0.179 4.179 14 C -0.023 4.023 15 N -0.341 5.341 16 C 0.291 3.709 17 O -0.469 6.469 18 C -0.017 4.017 19 N -0.313 5.313 20 C 0.403 3.597 21 O -0.456 6.456 22 N -0.365 5.365 23 C 0.036 3.964 24 C -0.204 4.204 25 C -0.197 4.197 26 C 0.314 3.686 27 O -0.357 6.357 28 C -0.027 4.027 29 H 0.011 0.989 30 H 0.049 0.951 31 H 0.040 0.960 32 H 0.056 0.944 33 H 0.124 0.876 34 H 0.084 0.916 35 H 0.128 0.872 36 H 0.122 0.878 37 H 0.174 0.826 38 H 0.165 0.835 39 H 0.300 0.700 40 H 0.107 0.893 41 H 0.133 0.867 42 H 0.062 0.938 43 H 0.088 0.912 44 H 0.129 0.871 45 H 0.109 0.891 46 H 0.050 0.950 47 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges 3.119 -28.812 -0.093 28.980 hybrid contribution -0.497 1.763 -0.576 1.920 sum 2.622 -27.049 -0.669 27.184 Atomic orbital electron populations 1.20437 0.83016 0.95938 0.97034 1.44158 1.01892 1.01194 1.85038 1.19667 0.97635 0.85757 1.36345 0.90003 1.25862 0.98571 1.02170 0.98666 1.70291 1.20477 1.27318 1.40776 0.85166 0.77174 0.79375 0.78154 1.21619 1.22259 1.18693 1.21599 0.96384 0.84579 0.91792 0.89546 1.23267 1.02554 0.93281 0.98805 1.22774 1.02926 0.98652 0.77958 1.48546 1.66347 1.06247 1.12944 1.21168 0.76449 0.87207 0.86097 1.90687 1.51262 1.86328 1.18645 1.21615 1.07079 0.82965 0.90061 1.46026 1.08797 1.39920 1.36573 1.15985 0.82263 0.80059 0.81435 1.90999 1.38891 1.60061 1.55626 1.45589 1.09805 1.44525 1.36589 1.21674 0.80166 0.98376 0.96186 1.22058 1.05275 1.02471 0.90645 1.22052 1.04792 0.88520 1.04351 1.21500 0.87342 0.79801 0.79918 1.90774 1.12401 1.64881 1.67624 1.22514 0.99543 0.81114 0.99494 0.98944 0.95123 0.96018 0.94358 0.87566 0.91612 0.87246 0.87833 0.82616 0.83525 0.69978 0.89260 0.86723 0.93789 0.91203 0.87144 0.89115 0.94992 0.93891 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.18 9.23 7.69 127.77 0.98 10.22 16 2 N -0.60 -29.85 2.94 -696.15 -2.04 -31.89 16 3 C -0.26 -14.28 9.63 84.03 0.81 -13.47 16 4 H 0.08 4.17 7.83 -2.91 -0.02 4.14 16 5 C -0.06 -3.27 5.07 84.86 0.43 -2.84 16 6 N -0.94 -57.29 10.67 21.65 0.23 -57.06 16 7 Si 0.97 45.18 29.58 68.60 2.03 47.21 16 8 H -0.29 -13.37 7.11 99.48 0.71 -12.66 16 9 H -0.30 -13.92 7.11 99.48 0.71 -13.21 16 10 H -0.26 -11.36 7.11 99.48 0.71 -10.65 16 11 C 0.17 6.38 3.43 46.18 0.16 6.53 16 12 H 0.09 3.20 7.92 -2.39 -0.02 3.18 16 13 C -0.14 -3.90 6.62 32.06 0.21 -3.68 16 14 C 0.10 2.09 6.69 86.93 0.58 2.67 16 15 N -0.61 -19.39 3.33 -811.37 -2.70 -22.09 16 16 C 0.50 16.87 7.92 87.66 0.69 17.57 16 17 O -0.59 -25.67 16.76 -3.03 -0.05 -25.72 16 18 C 0.11 2.46 5.19 85.63 0.44 2.90 16 19 N -0.57 -13.92 2.09 -777.24 -1.63 -15.55 16 20 C 0.70 17.70 8.62 179.44 1.55 19.24 16 21 O -0.58 -18.98 17.48 -3.83 -0.07 -19.05 16 22 N -0.70 -10.86 5.90 -439.81 -2.60 -13.45 16 23 C 0.13 1.74 1.37 2.98 0.00 1.74 16 24 C -0.15 -1.79 8.99 71.98 0.65 -1.14 16 25 C -0.14 -0.87 8.99 71.98 0.65 -0.22 16 26 C 0.53 11.78 6.98 87.94 0.61 12.39 16 27 O -0.49 -12.98 17.76 -2.90 -0.05 -13.03 16 28 C 0.10 4.03 6.51 86.73 0.56 4.60 16 29 H -0.01 -0.45 7.31 -2.39 -0.02 -0.47 16 30 H 0.03 1.35 6.20 -2.39 -0.01 1.34 16 31 H 0.02 1.17 7.23 -2.39 -0.02 1.15 16 32 H 0.25 14.65 8.31 -92.71 -0.77 13.88 16 33 H 0.11 2.48 8.14 -2.39 -0.02 2.46 16 34 H 0.07 2.03 6.21 -2.39 -0.01 2.02 16 35 H 0.11 1.58 7.48 -2.39 -0.02 1.57 16 36 H 0.10 1.63 8.14 -2.39 -0.02 1.61 16 37 H 0.16 2.50 8.00 -2.39 -0.02 2.49 16 38 H 0.15 2.73 7.56 -2.39 -0.02 2.71 16 39 H 0.45 4.33 8.96 -92.71 -0.83 3.49 16 40 H 0.09 1.04 8.14 -2.39 -0.02 1.02 16 41 H 0.11 0.60 8.14 -2.39 -0.02 0.58 16 42 H 0.04 0.82 8.14 -2.38 -0.02 0.80 16 43 H 0.07 0.46 8.14 -2.39 -0.02 0.44 16 44 H 0.11 0.08 8.14 -2.38 -0.02 0.06 16 45 H 0.09 0.54 8.14 -2.39 -0.02 0.52 16 46 H 0.03 1.56 7.01 -2.39 -0.02 1.54 16 47 H 0.04 1.85 8.14 -2.39 -0.02 1.83 16 Total: -1.00 -85.90 384.82 1.63 -84.27 By element: Atomic # 1 Polarization: 9.68 SS G_CDS: 0.17 Total: 9.85 kcal Atomic # 6 Polarization: 48.17 SS G_CDS: 8.34 Total: 56.51 kcal Atomic # 7 Polarization: -131.30 SS G_CDS: -8.73 Total: -140.04 kcal Atomic # 8 Polarization: -57.63 SS G_CDS: -0.17 Total: -57.80 kcal Atomic # 14 Polarization: 45.18 SS G_CDS: 2.03 Total: 47.21 kcal Total: -85.90 1.63 -84.27 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000980322047.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.946 kcal (2) G-P(sol) polarization free energy of solvation -85.898 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.951 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.628 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.270 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.323 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds