Wall clock time and date at job start Tue Mar 31 2020 21:31:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53003 * 110.65799 * 2 1 4 4 C 1.51582 * 110.69050 * 237.13701 * 2 1 3 5 5 O 1.21229 * 127.16143 * 61.51366 * 4 2 1 6 6 N 1.34770 * 105.68247 * 241.76399 * 4 2 1 7 7 C 1.33798 * 111.64663 * 359.78433 * 6 4 2 8 8 O 1.21531 * 123.77141 * 180.02562 * 7 6 4 9 9 N 1.34524 * 112.45351 * 359.97438 * 7 6 4 10 10 C 1.46500 * 126.68754 * 179.97438 * 9 7 6 11 11 C 1.50697 * 109.47387 * 90.02069 * 10 9 7 12 12 O 1.21279 * 119.99794 * 354.35661 * 11 10 9 13 13 N 1.34775 * 119.99795 * 174.35347 * 11 10 9 14 14 C 1.48218 * 119.97114 * 174.64244 * 13 11 10 15 15 C 1.47142 * 110.34428 * 102.46417 * 14 13 11 16 16 C 1.53241 * 111.80978 * 58.22764 * 15 14 13 17 17 N 1.43459 * 108.26440 * 281.67635 * 16 15 14 18 18 C 1.36938 * 118.94438 * 273.77819 * 17 16 15 19 19 H 1.07997 * 119.99190 * 34.46335 * 18 17 16 20 20 C 1.38812 * 120.00213 * 214.46137 * 18 17 16 21 21 N 1.31616 * 119.99462 * 193.47238 * 20 18 17 22 22 Si 1.86797 * 120.00101 * 13.46918 * 20 18 17 23 23 H 1.48500 * 109.47087 * 275.06894 * 22 20 18 24 24 H 1.48493 * 109.47109 * 155.07050 * 22 20 18 25 25 H 1.48509 * 109.47028 * 35.06856 * 22 20 18 26 26 C 1.48866 * 122.11860 * 93.50495 * 17 16 15 27 27 C 1.43619 * 119.97755 * 354.62497 * 13 11 10 28 28 H 1.09001 * 109.47129 * 297.08988 * 1 2 3 29 29 H 1.09007 * 109.46796 * 57.09145 * 1 2 3 30 30 H 1.08995 * 109.47580 * 177.08573 * 1 2 3 31 31 H 1.08996 * 109.46840 * 182.90971 * 3 2 1 32 32 H 1.09000 * 109.46849 * 302.91129 * 3 2 1 33 33 H 1.08999 * 109.47073 * 62.90725 * 3 2 1 34 34 H 0.97002 * 124.17835 * 179.74561 * 6 4 2 35 35 H 1.09007 * 109.46792 * 330.01935 * 10 9 7 36 36 H 1.08998 * 109.46966 * 210.02148 * 10 9 7 37 37 H 1.09002 * 109.32417 * 222.73181 * 14 13 11 38 38 H 1.08999 * 109.32451 * 342.37612 * 14 13 11 39 39 H 1.08997 * 109.00376 * 178.90522 * 15 14 13 40 40 H 1.09002 * 109.00441 * 297.76849 * 15 14 13 41 41 H 1.08999 * 109.49006 * 162.04148 * 16 15 14 42 42 H 1.08998 * 109.73552 * 41.46120 * 16 15 14 43 43 H 0.97006 * 119.99355 * 180.02562 * 21 20 18 44 44 H 1.08998 * 109.47823 * 80.87766 * 26 17 16 45 45 H 1.08993 * 109.48284 * 200.89781 * 26 17 16 46 46 H 1.08997 * 108.87915 * 149.90424 * 27 13 11 47 47 H 1.09005 * 108.87132 * 31.46260 * 27 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0698 1.4317 0.0000 4 6 2.0656 -0.7695 -1.1911 5 8 1.8932 -0.5163 -2.3641 6 7 2.7685 -1.7969 -0.6749 7 6 2.7556 -1.7810 0.6629 8 8 3.3203 -2.6061 1.3539 9 7 2.0486 -0.7490 1.1577 10 6 1.8310 -0.4351 2.5720 11 6 2.9287 0.4751 3.0593 12 8 3.8606 0.7448 2.3315 13 7 2.8748 0.9894 4.3039 14 6 4.0101 1.7870 4.8253 15 6 3.6927 3.2229 4.7742 16 6 2.4310 3.5560 5.5777 17 7 1.2880 3.1843 4.7945 18 6 0.7860 4.0797 3.8882 19 1 1.4536 4.7421 3.3571 20 6 -0.5807 4.1361 3.6520 21 7 -1.0417 4.7931 2.6089 22 14 -1.7655 3.2793 4.8146 23 1 -1.8991 1.8532 4.4227 24 1 -3.0939 3.9390 4.7423 25 1 -1.2452 3.3646 6.2030 26 6 0.6336 1.8542 4.9310 27 6 1.7173 0.7646 5.1237 28 1 -0.3633 0.4680 0.9149 29 1 -0.3633 0.5584 -0.8628 30 1 -0.3634 -1.0263 -0.0522 31 1 3.1583 1.4095 -0.0522 32 1 1.6755 1.9686 -0.8628 33 1 1.7600 1.9367 0.9149 34 1 3.2268 -2.4657 -1.2074 35 1 1.8381 -1.3569 3.1539 36 1 0.8680 0.0616 2.6900 37 1 4.2100 1.4983 5.8572 38 1 4.8950 1.5941 4.2188 39 1 4.5326 3.7867 5.1798 40 1 3.5375 3.5154 3.7356 41 1 2.4037 4.6258 5.7848 42 1 2.4332 2.9984 6.5142 43 1 -1.9968 4.8328 2.4441 44 1 -0.0307 1.8629 5.7951 45 1 0.0570 1.6386 4.0315 46 1 2.0230 0.7524 6.1699 47 1 1.2899 -0.2060 4.8718 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000989412713.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:31:41 Heat of formation + Delta-G solvation = -57.855491 kcal Electronic energy + Delta-G solvation = -32512.322616 eV Core-core repulsion = 28310.622690 eV Total energy + Delta-G solvation = -4201.699926 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -43.66363 -41.21701 -39.86828 -38.75903 -37.76783 -36.05361 -35.90344 -34.48145 -33.44094 -33.14290 -29.77073 -29.06058 -28.58248 -27.33948 -25.50745 -25.13125 -24.12174 -22.52727 -21.91106 -21.53723 -20.03862 -19.25245 -18.94292 -18.19433 -17.80820 -17.49201 -17.34326 -17.14658 -16.96613 -16.37213 -16.03456 -15.83859 -15.55989 -15.37251 -15.29911 -14.96358 -14.60326 -14.35082 -14.21555 -14.00345 -13.80098 -13.67813 -13.63714 -13.30602 -13.24773 -12.88448 -12.86463 -12.66225 -12.53595 -12.22311 -12.02898 -11.89165 -11.76460 -11.56944 -11.51103 -11.48644 -11.33154 -11.16651 -10.64621 -10.08260 -9.56298 -8.65926 -8.06548 -5.50105 0.41379 1.00279 1.36453 1.51501 1.58253 1.62893 1.76518 1.81996 2.23032 2.49690 2.81447 3.17411 3.41737 3.42538 3.54119 3.71313 3.79611 4.07200 4.14813 4.18587 4.23595 4.31967 4.43504 4.48867 4.52217 4.53712 4.64577 4.66109 4.72463 4.73986 4.87534 4.94442 4.96176 4.98067 5.03239 5.07001 5.08802 5.17759 5.27172 5.50546 5.74348 5.84739 6.01511 6.19052 6.25601 6.48980 6.93484 7.09614 7.20348 7.75745 8.09295 9.13403 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.012377 B = 0.005104 C = 0.004246 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2261.785140 B = 5484.447135 C = 6593.191538 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.122 3.878 3 C -0.128 4.128 4 C 0.546 3.454 5 O -0.483 6.483 6 N -0.666 5.666 7 C 0.711 3.289 8 O -0.571 6.571 9 N -0.594 5.594 10 C 0.130 3.870 11 C 0.494 3.506 12 O -0.573 6.573 13 N -0.587 5.587 14 C 0.131 3.869 15 C -0.154 4.154 16 C 0.159 3.841 17 N -0.611 5.611 18 C -0.248 4.248 19 H 0.027 0.973 20 C -0.028 4.028 21 N -0.961 5.961 22 Si 0.954 3.046 23 H -0.251 1.251 24 H -0.324 1.324 25 H -0.262 1.262 26 C 0.094 3.906 27 C 0.091 3.909 28 H 0.080 0.920 29 H 0.089 0.911 30 H 0.085 0.915 31 H 0.052 0.948 32 H 0.084 0.916 33 H 0.059 0.941 34 H 0.442 0.558 35 H 0.146 0.854 36 H 0.131 0.869 37 H 0.104 0.896 38 H 0.064 0.936 39 H 0.081 0.919 40 H 0.020 0.980 41 H 0.036 0.964 42 H 0.074 0.926 43 H 0.259 0.741 44 H 0.049 0.951 45 H 0.053 0.947 46 H 0.106 0.894 47 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.435 -14.536 3.548 15.352 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C 0.033 3.967 3 C -0.187 4.187 4 C 0.332 3.668 5 O -0.354 6.354 6 N -0.337 5.337 7 C 0.412 3.588 8 O -0.447 6.447 9 N -0.330 5.330 10 C 0.005 3.995 11 C 0.281 3.719 12 O -0.452 6.452 13 N -0.318 5.318 14 C 0.009 3.991 15 C -0.195 4.195 16 C 0.033 3.967 17 N -0.334 5.334 18 C -0.378 4.378 19 H 0.044 0.956 20 C -0.223 4.223 21 N -0.607 5.607 22 Si 0.782 3.218 23 H -0.175 1.175 24 H -0.254 1.254 25 H -0.187 1.187 26 C -0.031 4.031 27 C -0.034 4.034 28 H 0.099 0.901 29 H 0.108 0.892 30 H 0.104 0.896 31 H 0.071 0.929 32 H 0.103 0.897 33 H 0.078 0.922 34 H 0.286 0.714 35 H 0.163 0.837 36 H 0.148 0.852 37 H 0.122 0.878 38 H 0.082 0.918 39 H 0.099 0.901 40 H 0.039 0.961 41 H 0.055 0.945 42 H 0.093 0.907 43 H 0.068 0.932 44 H 0.066 0.934 45 H 0.072 0.928 46 H 0.124 0.876 47 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges 3.954 -14.569 3.044 15.400 hybrid contribution -0.319 0.427 -0.361 0.644 sum 3.636 -14.142 2.683 14.847 Atomic orbital electron populations 1.21990 0.88104 1.04620 1.05233 1.21609 0.98505 0.93607 0.82952 1.21773 1.00963 0.92271 1.03646 1.20654 0.76518 0.80171 0.89432 1.90809 1.57765 1.69572 1.17208 1.44144 1.51310 1.30223 1.07997 1.15788 0.79006 0.82154 0.81854 1.90969 1.49409 1.42985 1.61314 1.47271 1.52961 1.26878 1.05934 1.21424 0.98371 1.01397 0.78287 1.21398 0.87693 0.81130 0.81639 1.90645 1.37155 1.62164 1.55253 1.47485 1.18702 1.51348 1.14299 1.20644 0.88059 0.90263 1.00106 1.21544 1.00362 0.97118 1.00433 1.20390 0.85146 0.98266 0.92902 1.43960 1.34009 1.11549 1.43929 1.18586 0.90108 1.14301 1.14808 0.95561 1.26104 0.98563 0.99073 0.98511 1.69967 1.13674 1.47629 1.29396 0.85888 0.76524 0.78831 0.80512 1.17535 1.25390 1.18732 1.22801 0.95364 0.85172 0.99797 1.21986 0.85740 0.98517 0.97122 0.90088 0.89214 0.89561 0.92872 0.89724 0.92227 0.71408 0.83695 0.85170 0.87764 0.91761 0.90063 0.96087 0.94510 0.90745 0.93165 0.93363 0.92846 0.87558 0.87314 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.13 8.80 71.98 0.63 -2.49 16 2 C 0.12 3.23 1.14 2.98 0.00 3.24 16 3 C -0.13 -4.12 7.75 71.98 0.56 -3.56 16 4 C 0.55 14.24 7.48 87.94 0.66 14.90 16 5 O -0.48 -14.36 18.02 -2.87 -0.05 -14.41 16 6 N -0.67 -15.64 5.70 -441.12 -2.52 -18.15 16 7 C 0.71 19.94 8.68 179.44 1.56 21.49 16 8 O -0.57 -18.80 17.71 -3.81 -0.07 -18.87 16 9 N -0.59 -15.90 1.97 -798.95 -1.57 -17.47 16 10 C 0.13 3.20 4.75 85.63 0.41 3.61 16 11 C 0.49 15.53 7.24 87.66 0.63 16.16 16 12 O -0.57 -22.45 14.63 -3.03 -0.04 -22.50 16 13 N -0.59 -16.21 2.46 -831.20 -2.04 -18.26 16 14 C 0.13 3.49 5.66 84.23 0.48 3.97 16 15 C -0.15 -4.84 5.63 28.85 0.16 -4.68 16 16 C 0.16 5.33 5.59 87.02 0.49 5.81 16 17 N -0.61 -24.54 2.23 -699.19 -1.56 -26.09 16 18 C -0.25 -12.94 9.64 84.03 0.81 -12.14 16 19 H 0.03 1.63 8.06 -2.91 -0.02 1.61 16 20 C -0.03 -1.48 5.28 84.86 0.45 -1.03 16 21 N -0.96 -56.91 13.97 21.65 0.30 -56.61 16 22 Si 0.95 41.01 24.00 68.60 1.65 42.65 16 23 H -0.25 -9.22 6.58 99.48 0.65 -8.57 16 24 H -0.32 -14.96 7.11 99.48 0.71 -14.25 16 25 H -0.26 -10.68 6.70 99.48 0.67 -10.01 16 26 C 0.09 2.99 4.47 86.56 0.39 3.38 16 27 C 0.09 2.02 4.97 87.55 0.44 2.45 16 28 H 0.08 1.87 7.43 -2.39 -0.02 1.86 16 29 H 0.09 1.95 8.14 -2.38 -0.02 1.94 16 30 H 0.09 1.53 8.14 -2.39 -0.02 1.52 16 31 H 0.05 1.86 7.69 -2.39 -0.02 1.84 16 32 H 0.08 2.56 8.14 -2.39 -0.02 2.54 16 33 H 0.06 2.25 7.91 -2.39 -0.02 2.23 16 34 H 0.44 7.97 8.96 -92.71 -0.83 7.14 16 35 H 0.15 2.76 7.71 -2.38 -0.02 2.74 16 36 H 0.13 2.91 6.33 -2.39 -0.02 2.90 16 37 H 0.10 1.99 8.05 -2.39 -0.02 1.97 16 38 H 0.06 1.93 7.19 -2.39 -0.02 1.91 16 39 H 0.08 2.16 8.14 -2.39 -0.02 2.14 16 40 H 0.02 0.86 7.91 -2.39 -0.02 0.84 16 41 H 0.04 1.35 8.02 -2.39 -0.02 1.33 16 42 H 0.07 1.95 7.58 -2.39 -0.02 1.93 16 43 H 0.26 14.68 8.31 -92.70 -0.77 13.91 16 44 H 0.05 1.49 5.68 -2.39 -0.01 1.47 16 45 H 0.05 1.87 5.37 -2.39 -0.01 1.86 16 46 H 0.11 1.77 7.73 -2.39 -0.02 1.75 16 47 H 0.11 1.65 6.49 -2.38 -0.02 1.63 16 Total: -1.00 -76.23 367.15 1.84 -74.39 By element: Atomic # 1 Polarization: 24.13 SS G_CDS: 0.08 Total: 24.21 kcal Atomic # 6 Polarization: 43.45 SS G_CDS: 7.66 Total: 51.11 kcal Atomic # 7 Polarization: -129.20 SS G_CDS: -7.39 Total: -136.58 kcal Atomic # 8 Polarization: -55.61 SS G_CDS: -0.16 Total: -55.78 kcal Atomic # 14 Polarization: 41.01 SS G_CDS: 1.65 Total: 42.65 kcal Total: -76.23 1.84 -74.39 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000989412713.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.534 kcal (2) G-P(sol) polarization free energy of solvation -76.227 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.693 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.838 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.389 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.855 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds