Wall clock time and date at job start Tue Mar 31 2020 21:31:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52997 * 110.53364 * 2 1 4 4 N 1.47314 * 110.59917 * 122.83515 * 2 1 3 5 5 C 1.34527 * 106.62088 * 118.52653 * 4 2 1 6 6 O 1.21528 * 123.76893 * 179.97438 * 5 4 2 7 7 N 1.33793 * 112.45520 * 359.97438 * 5 4 2 8 8 C 1.46504 * 124.17543 * 179.97438 * 7 5 4 9 9 C 1.50700 * 109.46779 * 90.02578 * 8 7 5 10 10 O 1.21282 * 120.00133 * 0.02562 * 9 8 7 11 11 N 1.34772 * 119.99793 * 179.97438 * 9 8 7 12 12 C 1.48211 * 119.97320 * 180.02562 * 11 9 8 13 13 C 1.47147 * 110.34709 * 102.46164 * 12 11 9 14 14 C 1.53246 * 111.80789 * 58.22725 * 13 12 11 15 15 N 1.43459 * 108.26543 * 281.67965 * 14 13 12 16 16 C 1.36935 * 118.94034 * 273.78071 * 15 14 13 17 17 H 1.07996 * 120.00134 * 36.82976 * 16 15 14 18 18 C 1.38810 * 119.99758 * 216.83168 * 16 15 14 19 19 N 1.31623 * 119.99873 * 189.17978 * 18 16 15 20 20 Si 1.86808 * 120.00311 * 9.18500 * 18 16 15 21 21 H 1.48497 * 109.46993 * 179.97438 * 20 18 16 22 22 H 1.48501 * 109.46873 * 59.99529 * 20 18 16 23 23 H 1.48497 * 109.46773 * 299.99905 * 20 18 16 24 24 C 1.48863 * 122.11958 * 93.50493 * 15 14 13 25 25 C 1.43626 * 119.97183 * 0.02562 * 11 9 8 26 26 C 1.34762 * 111.64816 * 0.23503 * 7 5 4 27 27 O 1.21235 * 127.16024 * 179.73454 * 26 7 5 28 28 H 1.08995 * 109.46978 * 298.62409 * 1 2 3 29 29 H 1.09004 * 109.46850 * 58.62303 * 1 2 3 30 30 H 1.09000 * 109.47000 * 178.61661 * 1 2 3 31 31 H 1.09005 * 109.46872 * 181.37325 * 3 2 1 32 32 H 1.08994 * 109.47809 * 301.37562 * 3 2 1 33 33 H 1.09002 * 109.46875 * 61.38097 * 3 2 1 34 34 H 0.96999 * 126.68770 * 298.48924 * 4 2 1 35 35 H 1.08997 * 109.46884 * 330.02708 * 8 7 5 36 36 H 1.08997 * 109.46998 * 210.02582 * 8 7 5 37 37 H 1.08997 * 109.32649 * 222.73362 * 12 11 9 38 38 H 1.09004 * 109.32190 * 342.37614 * 12 11 9 39 39 H 1.08995 * 109.00645 * 178.90123 * 13 12 11 40 40 H 1.08996 * 109.00608 * 297.77633 * 13 12 11 41 41 H 1.09000 * 109.48607 * 162.03792 * 14 13 12 42 42 H 1.09004 * 109.73282 * 41.46219 * 14 13 12 43 43 H 0.96996 * 119.99715 * 354.37946 * 19 18 16 44 44 H 1.08999 * 109.47841 * 80.87604 * 24 15 14 45 45 H 1.09000 * 109.48151 * 200.91277 * 24 15 14 46 46 H 1.09001 * 108.86988 * 149.91093 * 25 11 9 47 47 H 1.08996 * 108.87297 * 31.47309 * 25 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0667 1.4328 0.0000 4 7 2.0484 -0.7477 1.1586 5 6 2.7600 -1.7772 0.6652 6 8 3.3291 -2.5982 1.3573 7 7 2.7711 -1.7961 -0.6725 8 6 3.4680 -2.8040 -1.4756 9 6 2.5387 -3.9582 -1.7497 10 8 1.4057 -3.9404 -1.3173 11 7 2.9663 -5.0097 -2.4762 12 6 2.0517 -6.1443 -2.7459 13 6 1.5300 -6.0656 -4.1196 14 6 2.6573 -6.0685 -5.1577 15 7 3.2291 -4.7536 -5.2041 16 6 2.6606 -3.8122 -6.0200 17 1 1.5879 -3.7796 -6.1412 18 6 3.4630 -2.8997 -6.6911 19 7 2.9159 -1.8864 -7.3286 20 14 5.3192 -3.1100 -6.6898 21 1 5.9422 -2.0124 -7.4722 22 1 5.6698 -4.4159 -7.3038 23 1 5.8208 -3.0693 -5.2927 24 6 4.4171 -4.3780 -4.3895 25 6 4.3080 -5.0299 -2.9884 26 6 2.0668 -0.7703 -1.1901 27 8 1.8969 -0.5170 -2.3634 28 1 -0.3633 0.4923 0.9020 29 1 -0.3633 0.5351 -0.8774 30 1 -0.3633 -1.0274 -0.0248 31 1 3.1563 1.4126 -0.0246 32 1 1.6932 1.9608 -0.8773 33 1 1.7332 1.9456 0.9021 34 1 1.9049 -0.5382 2.0948 35 1 4.3414 -3.1622 -0.9307 36 1 3.7851 -2.3607 -2.4195 37 1 2.5928 -7.0819 -2.6188 38 1 1.2184 -6.1107 -2.0440 39 1 0.8767 -6.9191 -4.3007 40 1 0.9527 -5.1475 -4.2279 41 1 2.2508 -6.3284 -6.1351 42 1 3.4201 -6.7923 -4.8707 43 1 1.9507 -1.8217 -7.3987 44 1 5.3227 -4.7291 -4.8841 45 1 4.4573 -3.2938 -4.2838 46 1 4.6450 -6.0644 -3.0535 47 1 4.9573 -4.4923 -2.2974 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000989607171.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:31:46 Heat of formation + Delta-G solvation = -30.236916 kcal Electronic energy + Delta-G solvation = -32140.037182 eV Core-core repulsion = 27939.534887 eV Total energy + Delta-G solvation = -4200.502295 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -42.57856 -39.89374 -38.56646 -37.32611 -36.57376 -35.17670 -34.40299 -33.00354 -31.59802 -31.42836 -28.92518 -27.78578 -27.60576 -25.82927 -24.26875 -23.20082 -22.81896 -21.67349 -20.54803 -19.86358 -18.89137 -17.95864 -17.70425 -17.09550 -16.57143 -16.15947 -15.97713 -15.69098 -15.55131 -15.07410 -14.72427 -14.54266 -14.20772 -14.12767 -13.97496 -13.52071 -13.37167 -12.99109 -12.88674 -12.84640 -12.54276 -12.49360 -12.45195 -12.37953 -11.88840 -11.84152 -11.74591 -11.42609 -10.88383 -10.83969 -10.42240 -10.35565 -10.27581 -10.12227 -10.07667 -9.67072 -9.57741 -9.26457 -9.01997 -8.51189 -8.19945 -6.97108 -6.15972 -3.42883 1.69776 2.06446 2.82325 2.92418 3.03692 3.32252 3.41476 3.48188 3.66903 3.82153 4.32508 4.53385 4.59201 4.66313 4.84338 4.96625 5.19183 5.21125 5.26906 5.28956 5.32056 5.39211 5.40445 5.44515 5.48716 5.54364 5.65569 5.71520 5.77304 5.78520 5.84662 5.86125 6.01962 6.27166 6.30580 6.43592 6.51706 6.65737 6.72574 6.81490 7.01135 7.07061 7.44020 7.67884 8.07741 8.19819 8.39960 8.52947 9.08368 9.64419 10.18545 11.17502 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.012604 B = 0.004721 C = 0.004060 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2220.953085 B = 5929.178533 C = 6894.775967 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.121 3.879 3 C -0.146 4.146 4 N -0.721 5.721 5 C 0.712 3.288 6 O -0.547 6.547 7 N -0.561 5.561 8 C 0.099 3.901 9 C 0.513 3.487 10 O -0.543 6.543 11 N -0.581 5.581 12 C 0.131 3.869 13 C -0.170 4.170 14 C 0.163 3.837 15 N -0.600 5.600 16 C -0.345 4.345 17 H 0.058 0.942 18 C -0.010 4.010 19 N -0.922 5.922 20 Si 1.061 2.939 21 H -0.300 1.300 22 H -0.291 1.291 23 H -0.278 1.278 24 C 0.104 3.896 25 C 0.085 3.915 26 C 0.527 3.473 27 O -0.439 6.439 28 H 0.077 0.923 29 H 0.084 0.916 30 H 0.071 0.929 31 H 0.067 0.933 32 H 0.086 0.914 33 H 0.078 0.922 34 H 0.437 0.563 35 H 0.123 0.877 36 H 0.130 0.870 37 H 0.065 0.935 38 H 0.078 0.922 39 H 0.058 0.942 40 H 0.068 0.932 41 H 0.053 0.947 42 H 0.034 0.966 43 H 0.263 0.737 44 H 0.039 0.961 45 H 0.071 0.929 46 H 0.074 0.926 47 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.920 1.145 16.860 16.924 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.030 3.970 3 C -0.204 4.204 4 N -0.386 5.386 5 C 0.412 3.588 6 O -0.421 6.421 7 N -0.306 5.306 8 C -0.026 4.026 9 C 0.299 3.701 10 O -0.421 6.421 11 N -0.313 5.313 12 C 0.010 3.990 13 C -0.211 4.211 14 C 0.035 3.965 15 N -0.323 5.323 16 C -0.475 4.475 17 H 0.076 0.924 18 C -0.212 4.212 19 N -0.561 5.561 20 Si 0.893 3.107 21 H -0.227 1.227 22 H -0.218 1.218 23 H -0.205 1.205 24 C -0.022 4.022 25 C -0.041 4.041 26 C 0.312 3.688 27 O -0.305 6.305 28 H 0.096 0.904 29 H 0.103 0.897 30 H 0.090 0.910 31 H 0.086 0.914 32 H 0.105 0.895 33 H 0.097 0.903 34 H 0.281 0.719 35 H 0.140 0.860 36 H 0.147 0.853 37 H 0.083 0.917 38 H 0.096 0.904 39 H 0.077 0.923 40 H 0.087 0.913 41 H 0.071 0.929 42 H 0.053 0.947 43 H 0.073 0.927 44 H 0.057 0.943 45 H 0.090 0.910 46 H 0.093 0.907 47 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 1.991 1.477 16.204 16.393 hybrid contribution -1.568 -0.719 0.750 1.881 sum 0.423 0.758 16.954 16.976 Atomic orbital electron populations 1.21992 0.90133 1.04287 1.04083 1.21468 0.97347 0.94066 0.84083 1.22002 1.02109 0.91947 1.04362 1.45599 1.55011 1.29068 1.08909 1.15736 0.79511 0.81970 0.81539 1.90980 1.48939 1.41395 1.60829 1.45854 1.49873 1.27312 1.07594 1.21588 0.94953 0.88042 0.98022 1.20470 0.88205 0.83208 0.78174 1.90646 1.19684 1.79026 1.52708 1.47280 1.13756 1.19409 1.50880 1.20598 0.93515 0.87035 0.97853 1.21744 1.01089 1.02085 0.96139 1.20254 0.92903 0.86937 0.96378 1.43895 1.32992 1.07981 1.47444 1.20136 0.92344 1.12850 1.22145 0.92405 1.26360 1.06235 0.94248 0.94368 1.70870 1.13068 1.28240 1.43883 0.84115 0.75630 0.75149 0.75834 1.22735 1.21844 1.20460 1.23049 0.90849 0.99169 0.89088 1.22001 0.82582 1.02377 0.97117 1.20802 0.77403 0.80493 0.90087 1.90930 1.54777 1.68638 1.16191 0.90410 0.89681 0.91013 0.91360 0.89544 0.90334 0.71909 0.85962 0.85259 0.91681 0.90356 0.92302 0.91279 0.92906 0.94722 0.92710 0.94349 0.91039 0.90720 0.91103 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.41 8.99 37.16 0.33 -1.08 16 2 C 0.12 1.32 1.37 -132.09 -0.18 1.14 16 3 C -0.15 -1.17 8.98 37.16 0.33 -0.84 16 4 N -0.72 -7.67 5.90 -52.93 -0.31 -7.98 16 5 C 0.71 10.69 8.62 -88.02 -0.76 9.93 16 6 O -0.55 -9.60 17.48 5.34 0.09 -9.50 16 7 N -0.56 -9.07 2.09 -122.02 -0.26 -9.32 16 8 C 0.10 1.63 4.74 -5.19 -0.02 1.60 16 9 C 0.51 9.82 7.74 -10.99 -0.09 9.73 16 10 O -0.54 -11.93 15.86 5.56 0.09 -11.85 16 11 N -0.58 -10.17 2.46 -176.62 -0.43 -10.60 16 12 C 0.13 2.15 5.69 -5.91 -0.03 2.12 16 13 C -0.17 -3.07 5.63 -29.41 -0.17 -3.23 16 14 C 0.16 3.17 5.59 -5.52 -0.03 3.14 16 15 N -0.60 -13.74 2.22 -172.31 -0.38 -14.13 16 16 C -0.35 -9.64 9.50 -15.06 -0.14 -9.79 16 17 H 0.06 1.81 8.06 -52.49 -0.42 1.38 16 18 C -0.01 -0.29 5.35 -17.43 -0.09 -0.39 16 19 N -0.92 -28.92 13.70 55.49 0.76 -28.16 16 20 Si 1.06 25.29 25.11 -169.99 -4.27 21.02 16 21 H -0.30 -7.45 7.11 56.52 0.40 -7.05 16 22 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 23 H -0.28 -5.69 4.92 56.52 0.28 -5.41 16 24 C 0.10 2.06 4.17 -1.72 -0.01 2.05 16 25 C 0.09 1.32 5.05 -4.55 -0.02 1.29 16 26 C 0.53 8.49 6.99 -10.55 -0.07 8.42 16 27 O -0.44 -8.84 17.75 5.60 0.10 -8.74 16 28 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 29 H 0.08 0.82 8.14 -51.93 -0.42 0.40 16 30 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 31 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 32 H 0.09 0.71 8.14 -51.93 -0.42 0.29 16 33 H 0.08 0.41 8.14 -51.93 -0.42 -0.01 16 34 H 0.44 3.24 8.96 -40.82 -0.37 2.88 16 35 H 0.12 1.66 7.09 -51.93 -0.37 1.30 16 36 H 0.13 2.21 7.17 -51.93 -0.37 1.84 16 37 H 0.06 0.88 8.05 -51.93 -0.42 0.46 16 38 H 0.08 1.35 7.12 -51.93 -0.37 0.98 16 39 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 40 H 0.07 1.55 7.90 -51.93 -0.41 1.14 16 41 H 0.05 1.08 8.02 -51.93 -0.42 0.66 16 42 H 0.03 0.58 7.58 -51.93 -0.39 0.19 16 43 H 0.26 8.32 8.73 -40.82 -0.36 7.97 16 44 H 0.04 0.73 5.69 -51.93 -0.30 0.44 16 45 H 0.07 1.54 5.12 -51.93 -0.27 1.27 16 46 H 0.07 0.99 7.73 -51.93 -0.40 0.59 16 47 H 0.07 0.89 6.38 -51.93 -0.33 0.56 16 LS Contribution 370.73 15.07 5.59 5.59 Total: -1.00 -37.87 370.73 -7.04 -44.91 By element: Atomic # 1 Polarization: 11.73 SS G_CDS: -7.07 Total: 4.66 kcal Atomic # 6 Polarization: 25.06 SS G_CDS: -0.95 Total: 24.11 kcal Atomic # 7 Polarization: -69.57 SS G_CDS: -0.62 Total: -70.20 kcal Atomic # 8 Polarization: -30.38 SS G_CDS: 0.28 Total: -30.09 kcal Atomic # 14 Polarization: 25.29 SS G_CDS: -4.27 Total: 21.02 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -37.87 -7.04 -44.91 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000989607171.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.673 kcal (2) G-P(sol) polarization free energy of solvation -37.867 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.194 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.043 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.910 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.237 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds