Wall clock time and date at job start Tue Mar 31 2020 20:29:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.53002 * 110.91327 * 2 1 4 4 C 1.55390 * 111.18850 * 235.94694 * 2 1 3 5 5 N 1.47426 * 104.87061 * 204.97796 * 4 2 1 6 6 C 1.34781 * 125.64525 * 204.16863 * 5 4 2 7 7 O 1.21283 * 120.00097 * 359.97438 * 6 5 4 8 8 C 1.50697 * 119.99894 * 179.97438 * 6 5 4 9 9 N 1.46501 * 109.47067 * 180.02562 * 8 6 5 10 10 C 1.46409 * 119.53577 * 89.99537 * 9 8 6 11 11 C 1.53042 * 109.51752 * 144.12248 * 10 9 8 12 12 C 1.50815 * 109.18457 * 46.69338 * 11 10 9 13 13 O 1.21232 * 120.01607 * 145.78860 * 12 11 10 14 14 N 1.34559 * 119.96158 * 325.76728 * 12 11 10 15 15 C 1.34286 * 119.52973 * 269.72029 * 9 8 6 16 16 O 1.21541 * 119.21337 * 5.71593 * 15 9 8 17 17 C 1.47016 * 108.70306 * 24.13191 * 5 4 2 18 18 C 1.54322 * 107.27483 * 358.94114 * 17 5 4 19 19 H 1.09003 * 110.71797 * 219.26844 * 18 17 5 20 20 N 1.46493 * 110.72330 * 96.16788 * 18 17 5 21 21 C 1.36945 * 119.99892 * 88.84215 * 20 18 17 22 22 H 1.08000 * 119.99422 * 359.72792 * 21 20 18 23 23 C 1.38811 * 120.00031 * 179.72716 * 21 20 18 24 24 N 1.31616 * 119.99707 * 0.02562 * 23 21 20 25 25 Si 1.86800 * 119.99814 * 180.02562 * 23 21 20 26 26 H 1.48500 * 109.47389 * 59.99917 * 25 23 21 27 27 H 1.48501 * 109.47057 * 180.02562 * 25 23 21 28 28 H 1.48504 * 109.47102 * 299.99569 * 25 23 21 29 29 H 1.09000 * 109.47230 * 296.09215 * 1 2 3 30 30 H 1.08998 * 109.47249 * 56.09838 * 1 2 3 31 31 H 1.09005 * 109.46927 * 176.09422 * 1 2 3 32 32 H 1.08995 * 109.46933 * 183.90194 * 3 2 1 33 33 H 1.08993 * 109.47561 * 303.90667 * 3 2 1 34 34 H 1.09000 * 109.46941 * 63.90417 * 3 2 1 35 35 H 1.08996 * 110.34238 * 86.12904 * 4 2 1 36 36 H 1.08995 * 110.44347 * 323.87960 * 4 2 1 37 37 H 1.09001 * 109.46320 * 299.99531 * 8 6 5 38 38 H 1.08998 * 109.47164 * 59.99375 * 8 6 5 39 39 H 1.09001 * 109.46208 * 264.13533 * 10 9 8 40 40 H 1.08998 * 109.46143 * 24.11947 * 10 9 8 41 41 H 1.08994 * 109.52251 * 166.60489 * 11 10 9 42 42 H 1.09003 * 109.51808 * 286.78558 * 11 10 9 43 43 H 0.97006 * 119.50155 * 184.45371 * 14 12 11 44 44 H 1.09003 * 109.88167 * 239.52066 * 17 5 4 45 45 H 1.09003 * 109.88413 * 118.35877 * 17 5 4 46 46 H 0.97000 * 120.00738 * 268.57679 * 20 18 17 47 47 H 0.97004 * 119.99151 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0762 1.4292 0.0000 4 6 2.0917 -0.8113 -1.2004 5 7 3.4327 -1.2459 -0.7690 6 6 4.4561 -1.5640 -1.5864 7 8 4.3126 -1.5042 -2.7892 8 6 5.7786 -1.9938 -1.0058 9 7 6.7185 -2.2814 -2.0921 10 6 7.5695 -1.2098 -2.6129 11 6 8.9388 -1.7810 -2.9882 12 6 8.7462 -3.0471 -3.7847 13 8 9.5242 -3.3309 -4.6701 14 7 7.7106 -3.8618 -3.5118 15 6 6.7913 -3.5255 -2.5924 16 8 6.0030 -4.3667 -2.2074 17 6 3.4691 -1.2741 0.7005 18 6 2.0862 -0.8080 1.2021 19 1 2.1893 -0.1707 2.0805 20 7 1.2269 -1.9574 1.4960 21 6 1.2431 -2.5234 2.7429 22 1 1.8927 -2.1250 3.5083 23 6 0.4247 -3.6090 3.0231 24 7 -0.3665 -4.0947 2.0901 25 14 0.4463 -4.3805 4.7242 26 1 0.0529 -3.3648 5.7335 27 1 -0.5100 -5.5159 4.7650 28 1 1.8138 -4.8748 5.0262 29 1 -0.3634 0.4520 0.9229 30 1 -0.3633 0.5732 -0.8529 31 1 -0.3633 -1.0253 -0.0700 32 1 3.1636 1.4026 -0.0699 33 1 1.6705 1.9733 -0.8528 34 1 1.7836 1.9300 0.9229 35 1 2.1643 -0.1783 -2.0847 36 1 1.4601 -1.6758 -1.4044 37 1 6.1785 -1.1944 -0.3820 38 1 5.6361 -2.8896 -0.4013 39 1 7.1037 -0.7730 -3.4962 40 1 7.6935 -0.4413 -1.8499 41 1 9.4851 -1.0531 -3.5879 42 1 9.5017 -2.0033 -2.0816 43 1 7.6294 -4.7056 -3.9834 44 1 4.2429 -0.5985 1.0652 45 1 3.6665 -2.2886 1.0470 46 1 0.6436 -2.3153 0.8086 47 1 -0.9381 -4.8536 2.2859 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000996501291.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:29:23 Heat of formation + Delta-G solvation = -97.552303 kcal Electronic energy + Delta-G solvation = -30560.976946 eV Core-core repulsion = 26357.555637 eV Total energy + Delta-G solvation = -4203.421309 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -42.76733 -41.27406 -40.12454 -39.17669 -37.27184 -35.77110 -35.67124 -34.57149 -32.58504 -32.48888 -29.50268 -29.35876 -27.96487 -26.79859 -26.01972 -25.60384 -24.09042 -23.04146 -20.90656 -20.23963 -19.68555 -19.35254 -19.06480 -18.79018 -18.17279 -17.59732 -17.13999 -16.65206 -16.55074 -16.17230 -15.82364 -15.69640 -15.54269 -15.47948 -15.26842 -14.90588 -14.50875 -14.37342 -14.11491 -13.72794 -13.56845 -13.36115 -13.21575 -13.05699 -12.97270 -12.76858 -12.71049 -12.65292 -12.55033 -12.17014 -12.05319 -11.92573 -11.78853 -11.42179 -11.41619 -11.40741 -11.29746 -11.14504 -10.88119 -9.97414 -9.58522 -8.96870 -7.89091 -5.17065 0.63012 1.15290 1.51369 1.53390 1.58512 1.58989 1.88610 2.14040 2.24785 2.60301 3.37284 3.39797 3.43198 3.62735 3.74934 3.86575 3.92512 3.98582 4.10174 4.14476 4.33895 4.37306 4.43079 4.53288 4.57410 4.63966 4.72629 4.83906 4.85343 4.92440 4.93031 4.95667 5.03758 5.08623 5.15041 5.15570 5.32052 5.38736 5.41933 5.45751 5.57665 5.64603 6.25969 6.31894 6.40791 6.59725 6.98163 7.14379 7.39238 8.15343 8.36404 9.34296 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.013580 B = 0.003049 C = 0.002674 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2061.425826 B = 9182.304133 C =10467.765901 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.076 4.076 3 C -0.120 4.120 4 C 0.122 3.878 5 N -0.603 5.603 6 C 0.504 3.496 7 O -0.585 6.585 8 C 0.120 3.880 9 N -0.594 5.594 10 C 0.105 3.895 11 C -0.144 4.144 12 C 0.522 3.478 13 O -0.540 6.540 14 N -0.675 5.675 15 C 0.709 3.291 16 O -0.600 6.600 17 C 0.077 3.923 18 C 0.167 3.833 19 H 0.086 0.914 20 N -0.726 5.726 21 C -0.231 4.231 22 H 0.087 0.913 23 C -0.077 4.077 24 N -0.972 5.972 25 Si 0.967 3.033 26 H -0.275 1.275 27 H -0.307 1.307 28 H -0.278 1.278 29 H 0.058 0.942 30 H 0.067 0.933 31 H 0.032 0.968 32 H 0.065 0.935 33 H 0.064 0.936 34 H 0.070 0.930 35 H 0.075 0.925 36 H 0.031 0.969 37 H 0.171 0.829 38 H 0.105 0.895 39 H 0.071 0.929 40 H 0.150 0.850 41 H 0.154 0.846 42 H 0.144 0.856 43 H 0.424 0.576 44 H 0.108 0.892 45 H 0.053 0.947 46 H 0.372 0.628 47 H 0.247 0.753 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.756 15.042 -5.115 24.581 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.077 4.077 3 C -0.177 4.177 4 C -0.002 4.002 5 N -0.335 5.335 6 C 0.293 3.707 7 O -0.466 6.466 8 C -0.007 4.007 9 N -0.329 5.329 10 C -0.016 4.016 11 C -0.183 4.183 12 C 0.312 3.688 13 O -0.415 6.415 14 N -0.342 5.342 15 C 0.410 3.590 16 O -0.477 6.477 17 C -0.048 4.048 18 C 0.057 3.943 19 H 0.104 0.896 20 N -0.365 5.365 21 C -0.363 4.363 22 H 0.105 0.895 23 C -0.269 4.269 24 N -0.623 5.623 25 Si 0.797 3.203 26 H -0.201 1.201 27 H -0.234 1.234 28 H -0.205 1.205 29 H 0.077 0.923 30 H 0.086 0.914 31 H 0.051 0.949 32 H 0.084 0.916 33 H 0.083 0.917 34 H 0.089 0.911 35 H 0.093 0.907 36 H 0.049 0.951 37 H 0.188 0.812 38 H 0.123 0.877 39 H 0.089 0.911 40 H 0.168 0.832 41 H 0.172 0.828 42 H 0.161 0.839 43 H 0.264 0.736 44 H 0.126 0.874 45 H 0.071 0.929 46 H 0.205 0.795 47 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges 18.826 14.630 -5.754 24.526 hybrid contribution -1.119 -2.107 0.020 2.386 sum 17.706 12.522 -5.734 22.432 Atomic orbital electron populations 1.21506 0.93644 1.00899 1.01829 1.22057 0.95861 0.96321 0.93478 1.21622 1.01192 0.92102 1.02824 1.22248 0.82992 0.96964 0.97952 1.48473 1.11567 1.65373 1.08129 1.21388 0.86582 0.76533 0.86224 1.90656 1.84184 1.55458 1.16262 1.21466 0.85449 1.05440 0.88301 1.46708 1.40334 1.07449 1.38411 1.22053 0.87551 0.89407 1.02584 1.22397 0.99432 0.93264 1.03225 1.21880 0.78228 0.85953 0.82724 1.90779 1.44034 1.75040 1.31680 1.44300 1.25203 1.24886 1.39839 1.15795 0.80478 0.83687 0.79016 1.91029 1.43850 1.50553 1.62303 1.23183 1.01668 1.01919 0.78051 1.21537 0.88424 0.88334 0.95965 0.89645 1.42660 1.47993 1.34396 1.11485 1.19637 1.17678 1.08829 0.90155 0.89504 1.25509 1.00032 1.00446 1.00919 1.69825 1.30186 1.27806 1.34481 0.85297 0.76950 0.77520 0.80487 1.20085 1.23387 1.20468 0.92301 0.91437 0.94902 0.91560 0.91676 0.91093 0.90701 0.95095 0.81205 0.87672 0.91051 0.83239 0.82834 0.83858 0.73561 0.87431 0.92882 0.79526 0.94466 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.68 8.23 71.98 0.59 -3.08 16 2 C -0.08 -2.09 0.84 -50.62 -0.04 -2.13 16 3 C -0.12 -2.32 8.58 71.98 0.62 -1.71 16 4 C 0.12 3.86 5.83 87.02 0.51 4.36 16 5 N -0.60 -17.83 3.32 -810.84 -2.69 -20.52 16 6 C 0.50 14.89 7.92 87.66 0.69 15.58 16 7 O -0.58 -21.70 16.69 -3.04 -0.05 -21.75 16 8 C 0.12 2.39 5.02 85.63 0.43 2.82 16 9 N -0.59 -11.48 2.28 -845.65 -1.93 -13.41 16 10 C 0.10 0.94 6.64 86.41 0.57 1.51 16 11 C -0.14 -0.99 6.28 29.90 0.19 -0.80 16 12 C 0.52 9.34 7.76 87.73 0.68 10.02 16 13 O -0.54 -13.22 17.93 -2.88 -0.05 -13.27 16 14 N -0.67 -14.71 5.18 -441.70 -2.29 -16.99 16 15 C 0.71 18.85 8.21 179.36 1.47 20.32 16 16 O -0.60 -22.20 16.66 -3.84 -0.06 -22.26 16 17 C 0.08 2.12 5.91 86.73 0.51 2.63 16 18 C 0.17 5.41 2.86 46.18 0.13 5.54 16 19 H 0.09 2.56 8.01 -2.39 -0.02 2.54 16 20 N -0.73 -32.91 4.56 -317.34 -1.45 -34.36 16 21 C -0.23 -11.69 9.97 84.03 0.84 -10.85 16 22 H 0.09 4.04 7.83 -2.91 -0.02 4.02 16 23 C -0.08 -4.24 5.50 84.86 0.47 -3.77 16 24 N -0.97 -58.73 13.06 21.65 0.28 -58.45 16 25 Si 0.97 44.60 29.55 68.60 2.03 46.63 16 26 H -0.27 -12.01 7.11 99.48 0.71 -11.30 16 27 H -0.31 -14.79 7.11 99.48 0.71 -14.08 16 28 H -0.28 -12.34 7.11 99.48 0.71 -11.63 16 29 H 0.06 1.79 8.14 -2.39 -0.02 1.77 16 30 H 0.07 1.70 8.14 -2.39 -0.02 1.68 16 31 H 0.03 1.23 6.44 -2.38 -0.02 1.22 16 32 H 0.07 1.13 7.91 -2.39 -0.02 1.11 16 33 H 0.06 1.15 8.14 -2.39 -0.02 1.13 16 34 H 0.07 1.25 8.14 -2.39 -0.02 1.23 16 35 H 0.07 2.26 7.95 -2.39 -0.02 2.24 16 36 H 0.03 1.20 8.00 -2.39 -0.02 1.18 16 37 H 0.17 1.40 7.82 -2.39 -0.02 1.38 16 38 H 0.11 2.54 7.43 -2.39 -0.02 2.52 16 39 H 0.07 0.85 8.14 -2.39 -0.02 0.83 16 40 H 0.15 0.04 7.79 -2.39 -0.02 0.02 16 41 H 0.15 0.34 8.14 -2.39 -0.02 0.32 16 42 H 0.14 0.30 8.14 -2.39 -0.02 0.28 16 43 H 0.42 9.12 8.86 -92.70 -0.82 8.30 16 44 H 0.11 1.91 8.14 -2.39 -0.02 1.89 16 45 H 0.05 1.78 8.04 -2.39 -0.02 1.76 16 46 H 0.37 19.13 6.20 -92.71 -0.57 18.55 16 47 H 0.25 14.75 8.31 -92.71 -0.77 13.98 16 Total: -1.00 -84.03 385.83 1.06 -82.97 By element: Atomic # 1 Polarization: 31.33 SS G_CDS: -0.39 Total: 30.94 kcal Atomic # 6 Polarization: 32.80 SS G_CDS: 7.66 Total: 40.46 kcal Atomic # 7 Polarization: -135.65 SS G_CDS: -8.07 Total: -143.73 kcal Atomic # 8 Polarization: -57.12 SS G_CDS: -0.17 Total: -57.28 kcal Atomic # 14 Polarization: 44.60 SS G_CDS: 2.03 Total: 46.63 kcal Total: -84.03 1.06 -82.97 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000996501291.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.579 kcal (2) G-P(sol) polarization free energy of solvation -84.035 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.614 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.062 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.973 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.552 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds