Wall clock time and date at job start Tue Mar 31 2020 20:29:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.34769 * 124.18010 * 2 1 4 4 O 1.21239 * 127.15477 * 359.92452 * 3 2 1 5 5 C 1.51580 * 105.68628 * 179.97438 * 3 2 1 6 6 N 1.47305 * 103.59224 * 0.02562 * 5 3 2 7 7 C 1.46507 * 126.69170 * 179.97438 * 6 5 3 8 8 C 1.50693 * 109.47256 * 89.99421 * 7 6 5 9 9 O 1.21277 * 120.00267 * 359.97438 * 8 7 6 10 10 N 1.34779 * 119.99988 * 180.02562 * 8 7 6 11 11 C 1.47026 * 125.64701 * 0.03037 * 10 8 7 12 12 C 1.54323 * 107.27157 * 178.90285 * 11 10 8 13 13 H 1.09002 * 110.72057 * 219.43994 * 12 11 10 14 14 N 1.46505 * 110.71829 * 96.34403 * 12 11 10 15 15 C 1.36930 * 119.99608 * 88.84823 * 14 12 11 16 16 H 1.08002 * 120.00527 * 359.97438 * 15 14 12 17 17 C 1.38814 * 119.99561 * 179.97438 * 15 14 12 18 18 N 1.31623 * 119.99798 * 179.97438 * 17 15 14 19 19 Si 1.86802 * 120.00213 * 359.97438 * 17 15 14 20 20 H 1.48503 * 109.46987 * 90.00062 * 19 17 15 21 21 H 1.48497 * 109.47362 * 210.00207 * 19 17 15 22 22 H 1.48493 * 109.47020 * 330.00278 * 19 17 15 23 23 C 1.55153 * 103.10236 * 337.89242 * 12 11 10 24 24 C 1.53000 * 111.00826 * 153.48934 * 23 12 11 25 25 C 1.53001 * 111.00494 * 277.34136 * 23 12 11 26 26 C 1.47426 * 125.65239 * 179.97438 * 10 8 7 27 27 C 1.33790 * 124.17577 * 180.21710 * 2 1 3 28 28 O 1.21531 * 123.77348 * 0.05396 * 27 2 1 29 29 H 1.09003 * 109.47101 * 0.03149 * 1 2 3 30 30 H 1.09004 * 109.47338 * 120.02632 * 1 2 3 31 31 H 1.08999 * 109.47949 * 240.02888 * 1 2 3 32 32 H 1.08995 * 110.59985 * 241.46900 * 5 3 2 33 33 H 1.08996 * 110.59618 * 118.52451 * 5 3 2 34 34 H 1.08996 * 109.46664 * 329.99559 * 7 6 5 35 35 H 1.09000 * 109.46724 * 209.99848 * 7 6 5 36 36 H 1.09000 * 109.88602 * 59.48426 * 11 10 8 37 37 H 1.09003 * 109.87921 * 298.32159 * 11 10 8 38 38 H 0.96995 * 119.99603 * 268.83426 * 14 12 11 39 39 H 0.97004 * 119.99478 * 179.97438 * 18 17 15 40 40 H 1.08995 * 109.47091 * 59.99529 * 24 23 12 41 41 H 1.08997 * 109.47530 * 180.02562 * 24 23 12 42 42 H 1.09011 * 109.46565 * 300.00310 * 24 23 12 43 43 H 1.09002 * 109.47253 * 59.99589 * 25 23 12 44 44 H 1.09002 * 109.46884 * 180.02562 * 25 23 12 45 45 H 1.09002 * 109.46818 * 299.99925 * 25 23 12 46 46 H 1.09003 * 110.36380 * 323.00845 * 26 10 8 47 47 H 1.09004 * 110.36441 * 85.21476 * 26 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2221 1.1149 0.0000 4 8 1.8341 2.2635 -0.0013 5 6 3.6596 0.6341 0.0007 6 7 3.5337 -0.8336 0.0003 7 6 4.6294 -1.8061 0.0002 8 6 5.0051 -2.1398 1.4209 9 8 4.4161 -1.6165 2.3428 10 7 5.9965 -3.0191 1.6670 11 6 6.7906 -3.7222 0.6488 12 6 7.8197 -4.5978 1.3944 13 1 8.7822 -4.5818 0.8830 14 7 7.3297 -5.9718 1.5300 15 6 7.5885 -6.8909 0.5486 16 1 8.1535 -6.6029 -0.3257 17 6 7.1246 -8.1929 0.6773 18 7 7.3730 -9.0762 -0.2663 19 14 6.1480 -8.6912 2.1897 20 1 4.7015 -8.4643 1.9418 21 1 6.3813 -10.1292 2.4779 22 1 6.5849 -7.8764 3.3517 23 6 7.9242 -3.9127 2.7826 24 6 8.3443 -4.9156 3.8589 25 6 8.8877 -2.7250 2.7369 26 6 6.4650 -3.4344 3.0017 27 6 2.2165 -1.1069 -0.0042 28 8 1.7602 -2.2333 -0.0094 29 1 -0.3633 1.0277 -0.0006 30 1 -0.3634 -0.5142 -0.8898 31 1 -0.3635 -0.5133 0.8902 32 1 4.1775 0.9748 0.8971 33 1 4.1781 0.9743 -0.8957 34 1 5.4919 -1.3816 -0.5135 35 1 4.3103 -2.7128 -0.5138 36 1 7.3072 -2.9994 0.0173 37 1 6.1403 -4.3510 0.0406 38 1 6.8221 -6.2303 2.3151 39 1 7.0491 -9.9862 -0.1761 40 1 9.3164 -5.3372 3.6032 41 1 8.4095 -4.4092 4.8219 42 1 7.6058 -5.7153 3.9185 43 1 8.5290 -1.9938 2.0124 44 1 8.9425 -2.2635 3.7229 45 1 9.8783 -3.0720 2.4429 46 1 6.4408 -2.5908 3.6917 47 1 5.8521 -4.2518 3.3815 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000996511477.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:29:37 Heat of formation + Delta-G solvation = -40.694038 kcal Electronic energy + Delta-G solvation = -30537.791224 eV Core-core repulsion = 26336.835475 eV Total energy + Delta-G solvation = -4200.955749 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -42.53050 -40.21324 -38.89867 -38.12416 -36.30928 -35.36382 -34.16235 -33.39257 -31.16435 -30.66291 -28.37412 -27.56110 -27.37928 -26.95992 -25.53673 -23.72591 -22.74321 -21.57733 -20.73084 -19.34860 -19.06623 -17.85913 -17.64342 -17.50849 -16.93844 -16.71733 -16.10860 -15.73642 -15.49362 -14.89511 -14.75808 -14.48252 -14.45974 -14.27388 -14.03923 -13.90711 -13.75549 -13.12465 -13.00892 -12.88818 -12.83160 -12.59816 -12.35253 -12.25668 -12.14439 -11.86363 -11.70913 -11.34536 -11.15418 -11.03262 -10.70763 -10.61184 -10.50335 -10.34976 -10.25468 -10.06418 -10.00547 -9.66283 -9.19465 -9.04767 -8.46455 -7.43524 -5.88860 -3.26304 1.35282 1.73408 2.55214 2.63468 2.77144 3.21220 3.29695 3.34198 3.40630 3.74003 4.35680 4.39010 4.49233 4.68064 4.74339 4.83310 4.87598 4.90822 4.98680 5.03959 5.08100 5.20483 5.24027 5.33486 5.41606 5.45738 5.53605 5.55630 5.71599 5.75753 5.86847 5.95778 6.01205 6.03022 6.07093 6.14750 6.18818 6.36336 6.42951 6.57462 6.62596 6.83447 7.04984 7.62732 7.84269 7.85018 8.17402 8.29878 9.06473 9.79245 9.97130 11.28682 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.014306 B = 0.003135 C = 0.002794 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1956.766004 B = 8928.161053 C =10018.774084 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.089 3.911 2 N -0.579 5.579 3 C 0.527 3.473 4 O -0.476 6.476 5 C 0.066 3.934 6 N -0.609 5.609 7 C 0.138 3.862 8 C 0.507 3.493 9 O -0.545 6.545 10 N -0.604 5.604 11 C 0.065 3.935 12 C 0.186 3.814 13 H 0.081 0.919 14 N -0.737 5.737 15 C -0.252 4.252 16 H 0.093 0.907 17 C 0.012 3.988 18 N -0.928 5.928 19 Si 0.879 3.121 20 H -0.283 1.283 21 H -0.290 1.290 22 H -0.276 1.276 23 C -0.092 4.092 24 C -0.128 4.128 25 C -0.128 4.128 26 C 0.120 3.880 27 C 0.704 3.296 28 O -0.532 6.532 29 H 0.093 0.907 30 H 0.078 0.922 31 H 0.078 0.922 32 H 0.125 0.875 33 H 0.125 0.875 34 H 0.119 0.881 35 H 0.124 0.876 36 H 0.062 0.938 37 H 0.083 0.917 38 H 0.364 0.636 39 H 0.261 0.739 40 H 0.065 0.935 41 H 0.048 0.952 42 H 0.061 0.939 43 H 0.054 0.946 44 H 0.053 0.947 45 H 0.060 0.940 46 H 0.072 0.928 47 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.305 20.288 1.031 20.581 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.052 4.052 2 N -0.325 5.325 3 C 0.315 3.685 4 O -0.347 6.347 5 C -0.060 4.060 6 N -0.347 5.347 7 C 0.013 3.987 8 C 0.293 3.707 9 O -0.423 6.423 10 N -0.337 5.337 11 C -0.060 4.060 12 C 0.074 3.926 13 H 0.099 0.901 14 N -0.378 5.378 15 C -0.382 4.382 16 H 0.111 0.889 17 C -0.184 4.184 18 N -0.575 5.575 19 Si 0.709 3.291 20 H -0.209 1.209 21 H -0.216 1.216 22 H -0.202 1.202 23 C -0.094 4.094 24 C -0.185 4.185 25 C -0.186 4.186 26 C -0.003 4.003 27 C 0.406 3.594 28 O -0.405 6.405 29 H 0.112 0.888 30 H 0.097 0.903 31 H 0.097 0.903 32 H 0.143 0.857 33 H 0.143 0.857 34 H 0.137 0.863 35 H 0.142 0.858 36 H 0.080 0.920 37 H 0.102 0.898 38 H 0.198 0.802 39 H 0.071 0.929 40 H 0.084 0.916 41 H 0.067 0.933 42 H 0.080 0.920 43 H 0.073 0.927 44 H 0.072 0.928 45 H 0.079 0.921 46 H 0.091 0.909 47 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -4.060 20.359 1.267 20.799 hybrid contribution -0.802 -0.634 1.025 1.448 sum -4.861 19.725 2.292 20.444 Atomic orbital electron populations 1.21821 0.74957 1.04382 1.04025 1.46228 1.09656 1.08076 1.68536 1.20846 0.88909 0.84687 0.74087 1.90811 1.79202 1.17883 1.46804 1.22517 0.95877 0.80902 1.06737 1.46977 1.04808 1.06094 1.76815 1.21145 0.88866 0.93560 0.95096 1.20662 0.79269 0.79017 0.91719 1.90691 1.52409 1.53041 1.46118 1.48432 1.34271 1.41959 1.09065 1.23356 0.95524 0.95456 0.91709 1.21169 0.95081 0.84417 0.91947 0.90079 1.42804 1.65420 1.05937 1.23688 1.19023 1.30119 0.89700 0.99311 0.88916 1.24649 1.00281 0.96052 0.97456 1.69690 1.50220 1.03989 1.33561 0.86667 0.80772 0.77918 0.83766 1.20950 1.21594 1.20237 1.22102 0.93586 0.96137 0.97538 1.21610 1.02560 0.98082 0.96289 1.21667 0.98731 0.96694 1.01489 1.22309 0.94042 0.99341 0.84578 1.15765 0.81725 0.84205 0.77690 1.91021 1.75015 1.20260 1.54156 0.88829 0.90284 0.90324 0.85730 0.85736 0.86304 0.85849 0.91957 0.89846 0.80190 0.92883 0.91573 0.93270 0.92049 0.92725 0.92758 0.92050 0.90934 0.91700 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.77 10.76 59.84 0.64 1.41 16 2 N -0.58 -6.48 3.00 -128.17 -0.39 -6.87 16 3 C 0.53 5.40 8.32 -10.56 -0.09 5.32 16 4 O -0.48 -5.80 17.51 5.59 0.10 -5.70 16 5 C 0.07 0.52 7.66 -4.32 -0.03 0.49 16 6 N -0.61 -6.79 2.51 -181.41 -0.45 -7.25 16 7 C 0.14 1.49 5.82 -5.19 -0.03 1.45 16 8 C 0.51 7.32 7.92 -10.99 -0.09 7.23 16 9 O -0.54 -9.66 16.69 5.56 0.09 -9.57 16 10 N -0.60 -8.61 3.32 -170.39 -0.57 -9.18 16 11 C 0.07 0.91 5.93 -3.06 -0.02 0.89 16 12 C 0.19 2.96 2.87 -66.10 -0.19 2.77 16 13 H 0.08 1.29 8.01 -51.93 -0.42 0.88 16 14 N -0.74 -15.35 4.36 -51.65 -0.23 -15.58 16 15 C -0.25 -6.43 10.45 -15.06 -0.16 -6.58 16 16 H 0.09 2.51 8.06 -52.49 -0.42 2.08 16 17 C 0.01 0.34 5.50 -17.43 -0.10 0.24 16 18 N -0.93 -27.74 13.97 55.49 0.78 -26.97 16 19 Si 0.88 21.28 27.74 -169.99 -4.71 16.57 16 20 H -0.28 -7.01 7.11 56.52 0.40 -6.60 16 21 H -0.29 -7.17 7.11 56.52 0.40 -6.76 16 22 H -0.28 -6.21 6.52 56.52 0.37 -5.84 16 23 C -0.09 -1.23 0.84 -152.25 -0.13 -1.36 16 24 C -0.13 -1.77 8.22 37.16 0.31 -1.47 16 25 C -0.13 -1.38 8.57 37.16 0.32 -1.06 16 26 C 0.12 1.74 5.83 -2.42 -0.01 1.73 16 27 C 0.70 9.62 8.31 -88.02 -0.73 8.89 16 28 O -0.53 -9.31 17.34 5.34 0.09 -9.22 16 29 H 0.09 0.67 7.64 -51.93 -0.40 0.27 16 30 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 31 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 32 H 0.13 0.92 8.14 -51.93 -0.42 0.50 16 33 H 0.12 0.56 8.14 -51.93 -0.42 0.14 16 34 H 0.12 0.79 8.14 -51.93 -0.42 0.36 16 35 H 0.12 1.41 8.03 -51.93 -0.42 0.99 16 36 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 37 H 0.08 1.34 8.04 -51.93 -0.42 0.93 16 38 H 0.36 7.76 4.07 -40.82 -0.17 7.60 16 39 H 0.26 7.51 8.31 -40.82 -0.34 7.17 16 40 H 0.07 0.94 8.14 -51.93 -0.42 0.51 16 41 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 42 H 0.06 0.98 6.43 -51.92 -0.33 0.65 16 43 H 0.05 0.56 7.92 -51.93 -0.41 0.15 16 44 H 0.05 0.54 8.14 -51.93 -0.42 0.11 16 45 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 46 H 0.07 1.02 7.95 -51.93 -0.41 0.61 16 47 H 0.06 1.05 7.99 -51.93 -0.41 0.64 16 LS Contribution 388.01 15.07 5.85 5.85 Total: -1.00 -35.61 388.01 -6.95 -42.56 By element: Atomic # 1 Polarization: 12.61 SS G_CDS: -7.20 Total: 5.41 kcal Atomic # 6 Polarization: 20.25 SS G_CDS: -0.30 Total: 19.95 kcal Atomic # 7 Polarization: -64.99 SS G_CDS: -0.86 Total: -65.84 kcal Atomic # 8 Polarization: -24.77 SS G_CDS: 0.28 Total: -24.49 kcal Atomic # 14 Polarization: 21.28 SS G_CDS: -4.71 Total: 16.57 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -35.61 -6.95 -42.56 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000996511477.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.865 kcal (2) G-P(sol) polarization free energy of solvation -35.611 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.746 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.948 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.559 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.694 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds