Wall clock time and date at job start Tue Mar 31 2020 20:29:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.34768 * 124.18166 * 2 1 4 4 O 1.21242 * 127.15303 * 0.02562 * 3 2 1 5 5 C 1.51580 * 105.68749 * 179.74529 * 3 2 1 6 6 N 1.47312 * 103.59052 * 0.34059 * 5 3 2 7 7 C 1.46506 * 126.69000 * 179.97438 * 6 5 3 8 8 C 1.50702 * 109.46851 * 269.70972 * 7 6 5 9 9 O 1.21281 * 119.99993 * 359.97438 * 8 7 6 10 10 N 1.34772 * 120.00043 * 180.02562 * 8 7 6 11 11 C 1.47435 * 125.64684 * 359.68065 * 10 8 7 12 12 C 1.55127 * 104.71843 * 155.82297 * 11 10 8 13 13 H 1.09003 * 110.90460 * 155.28107 * 12 11 10 14 14 N 1.46506 * 111.19354 * 279.19380 * 12 11 10 15 15 C 1.36946 * 119.99741 * 267.19009 * 14 12 11 16 16 H 1.07995 * 119.99917 * 359.97438 * 15 14 12 17 17 C 1.38809 * 119.99724 * 179.97438 * 15 14 12 18 18 N 1.31625 * 119.99933 * 0.02562 * 17 15 14 19 19 Si 1.86801 * 120.00029 * 179.97438 * 17 15 14 20 20 H 1.48503 * 109.46897 * 89.99785 * 19 17 15 21 21 H 1.48493 * 109.47038 * 210.00253 * 19 17 15 22 22 H 1.48494 * 109.46872 * 330.00355 * 19 17 15 23 23 C 1.55156 * 101.49106 * 37.29795 * 12 11 10 24 24 C 1.52990 * 110.72436 * 205.96885 * 23 12 11 25 25 C 1.53005 * 110.71931 * 82.69094 * 23 12 11 26 26 C 1.47016 * 125.65053 * 179.97438 * 10 8 7 27 27 C 1.33788 * 124.17481 * 179.97438 * 2 1 3 28 28 O 1.21544 * 123.77403 * 0.02748 * 27 2 1 29 29 H 1.08996 * 109.46840 * 270.03573 * 1 2 3 30 30 H 1.09000 * 109.46863 * 30.03497 * 1 2 3 31 31 H 1.08998 * 109.47541 * 150.03183 * 1 2 3 32 32 H 1.08995 * 110.69352 * 241.76996 * 5 3 2 33 33 H 1.09004 * 110.50213 * 118.81754 * 5 3 2 34 34 H 1.08994 * 109.46947 * 29.70393 * 7 6 5 35 35 H 1.08997 * 109.47271 * 149.70909 * 7 6 5 36 36 H 1.08997 * 110.36942 * 274.75215 * 11 10 8 37 37 H 1.09000 * 110.36081 * 37.08072 * 11 10 8 38 38 H 0.96996 * 120.00004 * 87.18854 * 14 12 11 39 39 H 0.96996 * 119.99634 * 180.02562 * 18 17 15 40 40 H 1.08999 * 109.47378 * 174.97498 * 24 23 12 41 41 H 1.09000 * 109.46963 * 294.97812 * 24 23 12 42 42 H 1.09004 * 109.47253 * 54.97383 * 24 23 12 43 43 H 1.09005 * 109.47115 * 305.02961 * 25 23 12 44 44 H 1.08995 * 109.46800 * 65.02725 * 25 23 12 45 45 H 1.08998 * 109.47042 * 185.02564 * 25 23 12 46 46 H 1.08995 * 109.88434 * 300.43554 * 26 10 8 47 47 H 1.09000 * 109.88479 * 61.44900 * 26 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2222 1.1149 0.0000 4 8 1.8341 2.2635 0.0004 5 6 3.6597 0.6341 0.0065 6 7 3.5338 -0.8337 0.0012 7 6 4.6295 -1.8062 0.0037 8 6 5.0076 -2.1405 -1.4163 9 8 4.4194 -1.6182 -2.3394 10 7 5.9986 -3.0206 -1.6604 11 6 6.7964 -3.7216 -0.6377 12 6 7.3095 -5.0021 -1.3474 13 1 8.2230 -5.3673 -0.8782 14 7 6.2800 -6.0443 -1.3690 15 6 6.2334 -6.9814 -0.3714 16 1 6.9557 -6.9524 0.4308 17 6 5.2577 -7.9685 -0.3916 18 7 4.3776 -8.0041 -1.3698 19 14 5.1945 -9.2472 0.9686 20 1 4.3245 -8.7577 2.0681 21 1 4.6440 -10.5166 0.4295 22 1 6.5647 -9.4837 1.4897 23 6 7.5927 -4.4705 -2.7773 24 6 7.4913 -5.5997 -3.8046 25 6 8.9657 -3.7985 -2.8429 26 6 6.4673 -3.4362 -2.9904 27 6 2.2165 -1.1069 0.0005 28 8 1.7602 -2.2334 0.0005 29 1 -0.3633 0.0006 1.0276 30 1 -0.3633 0.8897 -0.5144 31 1 -0.3634 -0.8902 -0.5133 32 1 4.1746 0.9715 0.9059 33 1 4.1811 0.9775 -0.8870 34 1 5.4911 -1.3814 0.5187 35 1 4.3095 -2.7127 0.5175 36 1 7.6335 -3.1009 -0.3183 37 1 6.1715 -3.9858 0.2154 38 1 5.6315 -6.0705 -2.0898 39 1 3.6956 -8.6936 -1.3836 40 1 7.6051 -5.1894 -4.8080 41 1 8.2783 -6.3309 -3.6196 42 1 6.5183 -6.0834 -3.7180 43 1 9.0259 -3.0200 -2.0823 44 1 9.7427 -4.5417 -2.6644 45 1 9.1065 -3.3552 -3.8287 46 1 5.6475 -3.8897 -3.5474 47 1 6.8521 -2.5734 -3.5342 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000996511478.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:29:41 Heat of formation + Delta-G solvation = -69.725835 kcal Electronic energy + Delta-G solvation = -30694.113308 eV Core-core repulsion = 26491.898646 eV Total energy + Delta-G solvation = -4202.214663 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -43.40264 -41.29253 -39.84307 -39.24256 -37.32581 -36.22680 -35.66123 -34.63338 -32.55343 -31.48421 -29.47256 -28.44240 -28.14665 -27.92948 -26.47893 -25.59726 -23.63856 -23.04235 -21.66103 -20.40920 -20.07391 -19.05995 -18.70325 -18.41736 -17.86278 -17.70055 -17.20421 -16.90585 -16.48077 -16.30043 -15.87199 -15.56146 -15.45194 -15.28390 -15.05783 -14.91575 -14.74397 -14.55900 -14.23694 -13.76300 -13.60271 -13.58257 -13.45899 -13.30229 -13.13055 -12.94383 -12.79646 -12.74115 -12.58421 -12.13747 -12.11293 -12.02886 -11.79450 -11.45500 -11.42068 -11.32669 -11.20935 -10.96909 -10.90232 -10.06476 -9.64637 -8.92101 -7.89956 -5.17800 0.51076 0.89981 1.49895 1.50851 1.53407 1.58909 1.76106 1.88305 2.23898 2.59201 2.97832 3.38024 3.42705 3.62232 3.74834 3.89078 3.91000 4.10780 4.12167 4.21061 4.30962 4.31594 4.36504 4.38733 4.44996 4.50989 4.64659 4.65521 4.76452 4.78476 4.83068 4.92351 4.94851 5.04986 5.12962 5.16712 5.17740 5.36662 5.38188 5.47754 5.57200 5.65555 5.95668 6.25024 6.30608 6.56295 6.88323 7.10812 7.37840 8.14575 8.35396 9.33590 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.011130 B = 0.003573 C = 0.002917 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2515.137976 B = 7834.953042 C = 9595.279746 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.082 3.918 2 N -0.582 5.582 3 C 0.528 3.472 4 O -0.496 6.496 5 C 0.072 3.928 6 N -0.606 5.606 7 C 0.144 3.856 8 C 0.499 3.501 9 O -0.587 6.587 10 N -0.600 5.600 11 C 0.071 3.929 12 C 0.164 3.836 13 H 0.089 0.911 14 N -0.723 5.723 15 C -0.230 4.230 16 H 0.089 0.911 17 C -0.077 4.077 18 N -0.973 5.973 19 Si 0.966 3.034 20 H -0.294 1.294 21 H -0.306 1.306 22 H -0.261 1.261 23 C -0.077 4.077 24 C -0.123 4.123 25 C -0.123 4.123 26 C 0.123 3.877 27 C 0.693 3.307 28 O -0.584 6.584 29 H 0.089 0.911 30 H 0.101 0.899 31 H 0.078 0.922 32 H 0.174 0.826 33 H 0.137 0.863 34 H 0.175 0.825 35 H 0.108 0.892 36 H 0.112 0.888 37 H 0.070 0.930 38 H 0.370 0.630 39 H 0.245 0.755 40 H 0.064 0.936 41 H 0.059 0.941 42 H 0.029 0.971 43 H 0.072 0.928 44 H 0.068 0.932 45 H 0.066 0.934 46 H 0.026 0.974 47 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.633 19.202 4.133 21.073 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 N -0.327 5.327 3 C 0.318 3.682 4 O -0.368 6.368 5 C -0.052 4.052 6 N -0.343 5.343 7 C 0.019 3.981 8 C 0.288 3.712 9 O -0.469 6.469 10 N -0.332 5.332 11 C -0.053 4.053 12 C 0.054 3.946 13 H 0.107 0.893 14 N -0.361 5.361 15 C -0.361 4.361 16 H 0.107 0.893 17 C -0.269 4.269 18 N -0.624 5.624 19 Si 0.796 3.204 20 H -0.221 1.221 21 H -0.233 1.233 22 H -0.185 1.185 23 C -0.079 4.079 24 C -0.181 4.181 25 C -0.180 4.180 26 C 0.000 4.000 27 C 0.396 3.604 28 O -0.461 6.461 29 H 0.108 0.892 30 H 0.120 0.880 31 H 0.097 0.903 32 H 0.191 0.809 33 H 0.155 0.845 34 H 0.192 0.808 35 H 0.126 0.874 36 H 0.130 0.870 37 H 0.088 0.912 38 H 0.202 0.798 39 H 0.054 0.946 40 H 0.082 0.918 41 H 0.078 0.922 42 H 0.048 0.952 43 H 0.091 0.909 44 H 0.087 0.913 45 H 0.085 0.915 46 H 0.045 0.955 47 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 6.890 19.348 3.838 20.894 hybrid contribution -1.369 -1.454 -0.121 2.000 sum 5.521 17.894 3.717 19.092 Atomic orbital electron populations 1.22000 0.74135 1.04892 1.04790 1.46364 1.10464 1.07830 1.68073 1.21197 0.89780 0.83999 0.73274 1.90802 1.79807 1.18365 1.47823 1.22823 0.94463 0.78384 1.09484 1.47123 1.03857 1.07785 1.75530 1.21293 0.90275 0.93674 0.92810 1.21352 0.78414 0.78600 0.92866 1.90661 1.53605 1.54935 1.47658 1.48422 1.34322 1.41486 1.09012 1.23527 0.95679 0.94882 0.91255 1.21751 0.92056 0.87278 0.93560 0.89313 1.42590 1.34616 1.30785 1.28141 1.19689 1.10153 1.04153 1.02153 0.89326 1.25506 0.98730 1.02099 1.00530 1.69844 1.20402 1.36984 1.35125 0.85244 0.78045 0.78366 0.78742 1.22141 1.23343 1.18523 1.21890 0.95667 0.94327 0.96008 1.21572 1.01234 0.97376 0.97902 1.21712 0.92864 1.00554 1.02867 1.21969 0.95802 0.97466 0.84714 1.16120 0.82912 0.83981 0.77429 1.91015 1.76085 1.22399 1.56577 0.89228 0.88008 0.90316 0.80915 0.84508 0.80780 0.87375 0.87040 0.91156 0.79776 0.94585 0.91754 0.92224 0.95214 0.90899 0.91292 0.91504 0.95499 0.90527 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.65 10.73 127.77 1.37 3.02 16 2 N -0.58 -14.41 3.00 -796.65 -2.39 -16.81 16 3 C 0.53 11.11 8.32 87.94 0.73 11.85 16 4 O -0.50 -12.22 17.76 -2.91 -0.05 -12.27 16 5 C 0.07 1.07 7.66 85.76 0.66 1.72 16 6 N -0.61 -14.30 2.51 -846.23 -2.12 -16.43 16 7 C 0.14 3.26 5.63 85.63 0.48 3.74 16 8 C 0.50 15.68 7.92 87.66 0.69 16.37 16 9 O -0.59 -23.08 16.76 -3.03 -0.05 -23.13 16 10 N -0.60 -17.87 3.32 -811.35 -2.70 -20.57 16 11 C 0.07 1.84 6.09 86.93 0.53 2.37 16 12 C 0.16 5.21 2.96 46.46 0.14 5.35 16 13 H 0.09 2.61 7.99 -2.39 -0.02 2.60 16 14 N -0.72 -32.91 4.57 -316.00 -1.44 -34.35 16 15 C -0.23 -11.65 9.96 84.03 0.84 -10.82 16 16 H 0.09 4.13 7.83 -2.91 -0.02 4.10 16 17 C -0.08 -4.26 5.50 84.86 0.47 -3.80 16 18 N -0.97 -59.89 13.06 21.65 0.28 -59.61 16 19 Si 0.97 45.12 29.55 68.60 2.03 47.15 16 20 H -0.29 -13.76 7.11 99.48 0.71 -13.05 16 21 H -0.31 -14.87 7.11 99.48 0.71 -14.16 16 22 H -0.26 -11.12 7.11 99.48 0.71 -10.42 16 23 C -0.08 -2.09 0.80 -50.99 -0.04 -2.14 16 24 C -0.12 -3.80 8.16 71.98 0.59 -3.22 16 25 C -0.12 -2.23 8.44 71.98 0.61 -1.62 16 26 C 0.12 3.78 6.03 86.73 0.52 4.30 16 27 C 0.69 21.42 8.31 179.44 1.49 22.91 16 28 O -0.58 -24.13 17.15 -3.85 -0.07 -24.19 16 29 H 0.09 1.46 8.14 -2.39 -0.02 1.44 16 30 H 0.10 1.70 8.00 -2.39 -0.02 1.68 16 31 H 0.08 1.77 7.86 -2.39 -0.02 1.75 16 32 H 0.17 0.93 8.14 -2.39 -0.02 0.91 16 33 H 0.14 1.82 8.14 -2.38 -0.02 1.80 16 34 H 0.17 1.82 8.14 -2.39 -0.02 1.80 16 35 H 0.11 2.90 7.74 -2.39 -0.02 2.88 16 36 H 0.11 1.83 7.69 -2.39 -0.02 1.81 16 37 H 0.07 2.01 7.48 -2.39 -0.02 1.99 16 38 H 0.37 19.46 6.32 -92.71 -0.59 18.87 16 39 H 0.25 14.98 8.31 -92.71 -0.77 14.20 16 40 H 0.06 1.68 8.14 -2.39 -0.02 1.66 16 41 H 0.06 1.80 8.14 -2.39 -0.02 1.78 16 42 H 0.03 1.17 6.34 -2.39 -0.02 1.15 16 43 H 0.07 1.09 7.42 -2.38 -0.02 1.07 16 44 H 0.07 1.17 8.14 -2.39 -0.02 1.15 16 45 H 0.07 1.08 8.14 -2.39 -0.02 1.07 16 46 H 0.03 1.02 7.82 -2.39 -0.02 1.00 16 47 H 0.08 2.08 7.85 -2.39 -0.02 2.06 16 Total: -1.00 -83.98 389.30 2.96 -81.01 By element: Atomic # 1 Polarization: 28.75 SS G_CDS: 0.40 Total: 29.16 kcal Atomic # 6 Polarization: 40.97 SS G_CDS: 9.07 Total: 50.04 kcal Atomic # 7 Polarization: -139.39 SS G_CDS: -8.37 Total: -147.76 kcal Atomic # 8 Polarization: -59.43 SS G_CDS: -0.17 Total: -59.60 kcal Atomic # 14 Polarization: 45.12 SS G_CDS: 2.03 Total: 47.15 kcal Total: -83.98 2.96 -81.01 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000996511478.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.287 kcal (2) G-P(sol) polarization free energy of solvation -83.975 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.688 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.962 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.013 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.726 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds