Wall clock time and date at job start Tue Mar 31 2020 20:29:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53000 * 110.29530 * 2 1 4 4 C 1.54003 * 110.32829 * 122.13720 * 2 1 3 5 5 N 1.47491 * 107.08822 * 117.58266 * 4 2 1 6 6 C 1.34770 * 127.03431 * 205.41106 * 5 4 2 7 7 O 1.21277 * 120.00211 * 0.02562 * 6 5 4 8 8 C 1.50707 * 119.99801 * 179.97438 * 6 5 4 9 9 C 1.52993 * 109.47138 * 180.02562 * 8 6 5 10 10 C 1.52997 * 109.47292 * 179.97438 * 9 8 6 11 11 H 1.09004 * 110.53294 * 54.30082 * 10 9 8 12 12 N 1.47312 * 110.60089 * 291.47655 * 10 9 8 13 13 C 1.34867 * 106.43677 * 241.51829 * 12 10 9 14 14 O 1.21536 * 123.73196 * 179.97438 * 13 12 10 15 15 N 1.33791 * 112.50117 * 359.86013 * 13 12 10 16 16 C 1.34769 * 111.64574 * 0.08818 * 15 13 12 17 17 O 1.21235 * 127.15827 * 180.02562 * 16 15 13 18 18 C 1.48124 * 105.92679 * 25.44846 * 5 4 2 19 19 C 1.54620 * 110.32567 * 237.86540 * 2 1 3 20 20 H 1.08995 * 110.73712 * 100.92472 * 19 2 1 21 21 N 1.46494 * 110.73981 * 337.59576 * 19 2 1 22 22 C 1.36941 * 120.00134 * 154.99893 * 21 19 2 23 23 H 1.08002 * 119.99563 * 0.02562 * 22 21 19 24 24 C 1.38804 * 120.00167 * 179.97438 * 22 21 19 25 25 N 1.31619 * 120.00124 * 0.02562 * 24 22 21 26 26 Si 1.86808 * 120.00059 * 179.97438 * 24 22 21 27 27 H 1.48502 * 109.46785 * 0.02562 * 26 24 22 28 28 H 1.48501 * 109.46705 * 120.00362 * 26 24 22 29 29 H 1.48495 * 109.47293 * 240.00204 * 26 24 22 30 30 H 1.09002 * 109.47153 * 60.69844 * 1 2 3 31 31 H 1.09001 * 109.46832 * 300.70034 * 1 2 3 32 32 H 1.09004 * 109.47261 * 180.70016 * 1 2 3 33 33 H 1.09004 * 109.46517 * 59.29812 * 3 2 1 34 34 H 1.08998 * 109.47615 * 179.29657 * 3 2 1 35 35 H 1.09001 * 109.46782 * 299.30629 * 3 2 1 36 36 H 1.08998 * 109.91743 * 236.94746 * 4 2 1 37 37 H 1.09003 * 109.91279 * 358.03510 * 4 2 1 38 38 H 1.09001 * 109.47239 * 300.00865 * 8 6 5 39 39 H 1.08998 * 109.46737 * 60.00245 * 8 6 5 40 40 H 1.09001 * 109.47683 * 300.00497 * 9 8 6 41 41 H 1.08998 * 109.47185 * 60.00423 * 9 8 6 42 42 H 0.96990 * 126.69695 * 61.43948 * 12 10 9 43 43 H 0.97003 * 124.17988 * 180.12464 * 15 13 12 44 44 H 1.08998 * 110.65919 * 79.15470 * 18 5 4 45 45 H 1.08998 * 110.65697 * 202.26519 * 18 5 4 46 46 H 0.97000 * 119.99987 * 334.99952 * 21 19 2 47 47 H 0.97006 * 119.99751 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0607 1.4350 0.0000 4 6 2.0650 -0.7682 1.2228 5 7 2.8277 -1.9218 0.7102 6 6 3.0624 -3.0868 1.3459 7 8 2.6253 -3.2671 2.4627 8 6 3.8671 -4.1660 0.6683 9 6 3.9843 -5.3749 1.5987 10 6 4.8007 -6.4708 0.9106 11 1 5.7641 -6.0806 0.5822 12 7 4.0551 -7.0353 -0.2275 13 6 3.8681 -8.3420 0.0492 14 8 3.2820 -9.1107 -0.6875 15 7 4.4014 -8.6981 1.2234 16 6 4.9928 -7.6545 1.8377 17 8 5.5607 -7.6612 2.9088 18 6 3.2836 -1.5376 -0.6457 19 6 2.0671 -0.7712 -1.2278 20 1 2.3823 -0.0805 -2.0098 21 7 1.0595 -1.7062 -1.7346 22 6 1.0886 -2.0996 -3.0459 23 1 1.8546 -1.7209 -3.7064 24 6 0.1343 -2.9859 -3.5259 25 7 -0.7989 -3.4478 -2.7209 26 14 0.1735 -3.5220 -5.3150 27 1 1.3128 -2.8642 -6.0039 28 1 0.3368 -4.9962 -5.3864 29 1 -1.0975 -3.1321 -5.9766 30 1 -0.3633 0.5030 -0.8962 31 1 -0.3633 0.5247 0.8837 32 1 -0.3634 -1.0276 0.0126 33 1 1.6945 1.9577 0.8837 34 1 3.1505 1.4195 0.0126 35 1 1.7149 1.9502 -0.8962 36 1 2.7181 -0.1228 1.8102 37 1 1.2335 -1.1129 1.8376 38 1 3.3698 -4.4649 -0.2544 39 1 4.8626 -3.7865 0.4380 40 1 4.4814 -5.0763 2.5217 41 1 2.9887 -5.7543 1.8286 42 1 3.7570 -6.5595 -1.0184 43 1 4.3672 -9.5966 1.5873 44 1 4.1553 -0.8859 -0.5880 45 1 3.5026 -2.4227 -1.2429 46 1 0.3718 -2.0466 -1.1412 47 1 -1.4661 -4.0669 -3.0565 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000996583178.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:29:15 Heat of formation + Delta-G solvation = -69.348547 kcal Electronic energy + Delta-G solvation = -30444.212708 eV Core-core repulsion = 26242.014406 eV Total energy + Delta-G solvation = -4202.198302 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -42.50278 -40.00087 -38.79494 -38.10505 -36.54375 -34.72504 -33.95827 -33.31948 -32.23069 -30.81139 -28.37237 -27.98724 -26.71696 -25.96246 -23.95036 -23.45430 -22.70076 -21.67599 -21.44780 -19.03851 -18.59120 -18.54631 -17.28640 -17.16084 -16.87732 -16.55111 -16.05932 -15.88942 -15.73283 -15.23647 -15.00424 -14.43046 -14.36388 -14.03689 -13.94751 -13.81783 -13.45241 -13.00346 -12.81720 -12.58559 -12.38197 -12.28980 -11.94274 -11.85990 -11.57805 -11.36453 -11.24950 -11.10797 -11.05618 -10.97242 -10.59581 -10.58172 -10.50711 -10.44568 -10.27454 -9.96087 -9.69862 -9.68188 -9.56672 -9.11436 -8.33906 -7.07787 -5.89093 -3.19294 1.35682 2.22490 2.83206 2.90174 2.92769 3.27219 3.35237 3.40589 3.44472 3.75323 4.33701 4.46973 4.54830 4.75699 4.86844 5.03885 5.06320 5.14888 5.17028 5.18814 5.41433 5.47440 5.54872 5.64960 5.71007 5.77243 5.81861 5.83717 5.91040 5.96629 5.98230 6.12672 6.17830 6.20534 6.30593 6.37611 6.46241 6.59621 6.60090 6.71984 6.75197 6.92009 7.14640 7.58296 7.88525 7.96911 8.28623 8.43900 9.40780 9.96731 10.31135 11.32566 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.008906 B = 0.004037 C = 0.002962 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3143.054947 B = 6934.807373 C = 9451.401492 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.091 4.091 3 C -0.132 4.132 4 C 0.118 3.882 5 N -0.605 5.605 6 C 0.535 3.465 7 O -0.555 6.555 8 C -0.135 4.135 9 C -0.103 4.103 10 C 0.092 3.908 11 H 0.132 0.868 12 N -0.719 5.719 13 C 0.703 3.297 14 O -0.541 6.541 15 N -0.680 5.680 16 C 0.532 3.468 17 O -0.467 6.467 18 C 0.067 3.933 19 C 0.176 3.824 20 H 0.071 0.929 21 N -0.711 5.711 22 C -0.249 4.249 23 H 0.072 0.928 24 C -0.006 4.006 25 N -0.926 5.926 26 Si 0.903 3.097 27 H -0.280 1.280 28 H -0.291 1.291 29 H -0.291 1.291 30 H 0.061 0.939 31 H 0.042 0.958 32 H 0.065 0.935 33 H 0.052 0.948 34 H 0.053 0.947 35 H 0.059 0.941 36 H 0.059 0.941 37 H 0.071 0.929 38 H 0.101 0.899 39 H 0.095 0.905 40 H 0.097 0.903 41 H 0.085 0.915 42 H 0.446 0.554 43 H 0.432 0.568 44 H 0.060 0.940 45 H 0.083 0.917 46 H 0.388 0.612 47 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.839 1.305 6.999 14.680 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.093 4.093 3 C -0.189 4.189 4 C -0.005 4.005 5 N -0.338 5.338 6 C 0.324 3.676 7 O -0.435 6.435 8 C -0.175 4.175 9 C -0.142 4.142 10 C -0.017 4.017 11 H 0.149 0.851 12 N -0.385 5.385 13 C 0.402 3.598 14 O -0.414 6.414 15 N -0.351 5.351 16 C 0.317 3.683 17 O -0.336 6.336 18 C -0.059 4.059 19 C 0.063 3.937 20 H 0.089 0.911 21 N -0.352 5.352 22 C -0.380 4.380 23 H 0.090 0.910 24 C -0.203 4.203 25 N -0.573 5.573 26 Si 0.734 3.266 27 H -0.205 1.205 28 H -0.218 1.218 29 H -0.219 1.219 30 H 0.080 0.920 31 H 0.061 0.939 32 H 0.084 0.916 33 H 0.071 0.929 34 H 0.072 0.928 35 H 0.078 0.922 36 H 0.077 0.923 37 H 0.090 0.910 38 H 0.120 0.880 39 H 0.113 0.887 40 H 0.115 0.885 41 H 0.104 0.896 42 H 0.292 0.708 43 H 0.274 0.726 44 H 0.078 0.922 45 H 0.102 0.898 46 H 0.225 0.775 47 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 12.630 0.743 7.606 14.762 hybrid contribution -0.411 -0.658 -1.101 1.346 sum 12.219 0.086 6.506 13.843 Atomic orbital electron populations 1.21682 0.93128 1.02675 1.00796 1.21804 0.96974 0.95022 0.95457 1.21810 1.00397 0.94954 1.01775 1.22090 0.95560 0.86810 0.96045 1.48613 1.52638 1.14484 1.18053 1.19985 0.80513 0.81596 0.85469 1.90683 1.53163 1.79825 1.19786 1.21569 1.01463 0.94043 1.00382 1.21548 1.01481 0.92333 0.98791 1.22181 0.98812 0.94152 0.86568 0.85088 1.45740 1.60495 1.08734 1.23569 1.15950 0.79112 0.83611 0.81125 1.91078 1.44878 1.54426 1.51042 1.44318 1.54446 1.14948 1.21403 1.20778 0.76570 0.85340 0.85613 1.90850 1.39555 1.83979 1.19243 1.23654 0.98870 1.00869 0.82482 1.21336 0.88832 0.90972 0.92549 0.91078 1.42539 1.31715 1.51530 1.09419 1.19264 1.10544 1.21515 0.86679 0.91032 1.24733 0.97770 0.99999 0.97772 1.69668 1.17629 1.35658 1.34384 0.86195 0.77321 0.78214 0.84850 1.20523 1.21785 1.21853 0.91963 0.93936 0.91563 0.92868 0.92799 0.92160 0.92295 0.91006 0.88032 0.88678 0.88478 0.89636 0.70787 0.72602 0.92228 0.89826 0.77539 0.93372 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.00 7.62 37.16 0.28 -1.72 16 2 C -0.09 -1.31 0.94 -153.14 -0.14 -1.45 16 3 C -0.13 -1.51 8.21 37.16 0.31 -1.20 16 4 C 0.12 1.74 6.28 -2.98 -0.02 1.73 16 5 N -0.61 -9.26 3.29 -169.64 -0.56 -9.82 16 6 C 0.54 8.45 7.89 -10.98 -0.09 8.36 16 7 O -0.56 -10.55 16.32 5.56 0.09 -10.46 16 8 C -0.13 -1.53 4.55 -27.88 -0.13 -1.65 16 9 C -0.10 -1.09 4.26 -26.74 -0.11 -1.20 16 10 C 0.09 0.78 3.65 -68.21 -0.25 0.53 16 11 H 0.13 0.74 8.14 -51.93 -0.42 0.32 16 12 N -0.72 -7.07 6.04 -59.10 -0.36 -7.42 16 13 C 0.70 8.42 9.00 -87.71 -0.79 7.63 16 14 O -0.54 -8.72 18.04 5.33 0.10 -8.62 16 15 N -0.68 -6.47 5.70 -15.71 -0.09 -6.56 16 16 C 0.53 5.31 8.14 -10.55 -0.09 5.23 16 17 O -0.47 -5.84 18.02 5.60 0.10 -5.74 16 18 C 0.07 0.96 6.64 -2.03 -0.01 0.95 16 19 C 0.18 2.93 3.16 -65.96 -0.21 2.72 16 20 H 0.07 1.17 7.80 -51.93 -0.41 0.77 16 21 N -0.71 -15.50 4.60 -51.53 -0.24 -15.74 16 22 C -0.25 -6.13 9.96 -15.06 -0.15 -6.28 16 23 H 0.07 1.70 7.83 -52.49 -0.41 1.29 16 24 C -0.01 -0.15 5.50 -17.43 -0.10 -0.25 16 25 N -0.93 -26.29 13.06 55.49 0.72 -25.56 16 26 Si 0.90 20.96 29.55 -169.99 -5.02 15.94 16 27 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 28 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 29 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 30 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 31 H 0.04 0.58 8.14 -51.93 -0.42 0.16 16 32 H 0.07 1.26 6.21 -51.93 -0.32 0.94 16 33 H 0.05 0.55 8.14 -51.93 -0.42 0.12 16 34 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 35 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 36 H 0.06 0.78 7.68 -51.93 -0.40 0.38 16 37 H 0.07 1.18 7.60 -51.93 -0.39 0.79 16 38 H 0.10 1.21 7.31 -51.93 -0.38 0.83 16 39 H 0.09 0.80 8.14 -51.93 -0.42 0.38 16 40 H 0.10 1.06 8.10 -51.93 -0.42 0.64 16 41 H 0.08 1.10 8.10 -51.93 -0.42 0.68 16 42 H 0.45 4.22 8.51 -40.82 -0.35 3.87 16 43 H 0.43 3.24 8.96 -40.82 -0.37 2.88 16 44 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 45 H 0.08 1.24 7.24 -51.93 -0.38 0.86 16 46 H 0.39 9.41 5.67 -40.82 -0.23 9.18 16 47 H 0.26 7.16 8.31 -40.82 -0.34 6.82 16 LS Contribution 386.21 15.07 5.82 5.82 Total: -1.00 -33.51 386.21 -7.92 -41.43 By element: Atomic # 1 Polarization: 20.33 SS G_CDS: -6.99 Total: 13.34 kcal Atomic # 6 Polarization: 14.89 SS G_CDS: -1.49 Total: 13.40 kcal Atomic # 7 Polarization: -64.59 SS G_CDS: -0.52 Total: -65.10 kcal Atomic # 8 Polarization: -25.10 SS G_CDS: 0.29 Total: -24.81 kcal Atomic # 14 Polarization: 20.96 SS G_CDS: -5.02 Total: 15.94 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -33.51 -7.92 -41.43 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000996583178.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.921 kcal (2) G-P(sol) polarization free energy of solvation -33.511 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.432 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.917 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.428 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.349 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds