Wall clock time and date at job start Tue Mar 31 2020 20:29:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53000 * 110.29530 * 2 1 4 4 C 1.54003 * 110.32829 * 122.13720 * 2 1 3 5 5 N 1.47491 * 107.08822 * 117.58266 * 4 2 1 6 6 C 1.34770 * 127.03431 * 205.41106 * 5 4 2 7 7 O 1.21277 * 120.00211 * 0.02562 * 6 5 4 8 8 C 1.50707 * 119.99801 * 179.97438 * 6 5 4 9 9 C 1.52993 * 109.47138 * 180.02562 * 8 6 5 10 10 C 1.52997 * 109.47292 * 179.97438 * 9 8 6 11 11 H 1.09004 * 110.53294 * 54.30082 * 10 9 8 12 12 N 1.47312 * 110.60089 * 291.47655 * 10 9 8 13 13 C 1.34867 * 106.43677 * 241.51829 * 12 10 9 14 14 O 1.21536 * 123.73196 * 179.97438 * 13 12 10 15 15 N 1.33791 * 112.50117 * 359.86013 * 13 12 10 16 16 C 1.34769 * 111.64574 * 0.08818 * 15 13 12 17 17 O 1.21235 * 127.15827 * 180.02562 * 16 15 13 18 18 C 1.48124 * 105.92679 * 25.44846 * 5 4 2 19 19 C 1.54620 * 110.32567 * 237.86540 * 2 1 3 20 20 H 1.08995 * 110.73712 * 100.92472 * 19 2 1 21 21 N 1.46494 * 110.73981 * 337.59576 * 19 2 1 22 22 C 1.36941 * 120.00134 * 154.99893 * 21 19 2 23 23 H 1.08002 * 119.99563 * 0.02562 * 22 21 19 24 24 C 1.38804 * 120.00167 * 179.97438 * 22 21 19 25 25 N 1.31619 * 120.00124 * 0.02562 * 24 22 21 26 26 Si 1.86808 * 120.00059 * 179.97438 * 24 22 21 27 27 H 1.48502 * 109.46785 * 0.02562 * 26 24 22 28 28 H 1.48501 * 109.46705 * 120.00362 * 26 24 22 29 29 H 1.48495 * 109.47293 * 240.00204 * 26 24 22 30 30 H 1.09002 * 109.47153 * 60.69844 * 1 2 3 31 31 H 1.09001 * 109.46832 * 300.70034 * 1 2 3 32 32 H 1.09004 * 109.47261 * 180.70016 * 1 2 3 33 33 H 1.09004 * 109.46517 * 59.29812 * 3 2 1 34 34 H 1.08998 * 109.47615 * 179.29657 * 3 2 1 35 35 H 1.09001 * 109.46782 * 299.30629 * 3 2 1 36 36 H 1.08998 * 109.91743 * 236.94746 * 4 2 1 37 37 H 1.09003 * 109.91279 * 358.03510 * 4 2 1 38 38 H 1.09001 * 109.47239 * 300.00865 * 8 6 5 39 39 H 1.08998 * 109.46737 * 60.00245 * 8 6 5 40 40 H 1.09001 * 109.47683 * 300.00497 * 9 8 6 41 41 H 1.08998 * 109.47185 * 60.00423 * 9 8 6 42 42 H 0.96990 * 126.69695 * 61.43948 * 12 10 9 43 43 H 0.97003 * 124.17988 * 180.12464 * 15 13 12 44 44 H 1.08998 * 110.65919 * 79.15470 * 18 5 4 45 45 H 1.08998 * 110.65697 * 202.26519 * 18 5 4 46 46 H 0.97000 * 119.99987 * 334.99952 * 21 19 2 47 47 H 0.97006 * 119.99751 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0607 1.4350 0.0000 4 6 2.0650 -0.7682 1.2228 5 7 2.8277 -1.9218 0.7102 6 6 3.0624 -3.0868 1.3459 7 8 2.6253 -3.2671 2.4627 8 6 3.8671 -4.1660 0.6683 9 6 3.9843 -5.3749 1.5987 10 6 4.8007 -6.4708 0.9106 11 1 5.7641 -6.0806 0.5822 12 7 4.0551 -7.0353 -0.2275 13 6 3.8681 -8.3420 0.0492 14 8 3.2820 -9.1107 -0.6875 15 7 4.4014 -8.6981 1.2234 16 6 4.9928 -7.6545 1.8377 17 8 5.5607 -7.6612 2.9088 18 6 3.2836 -1.5376 -0.6457 19 6 2.0671 -0.7712 -1.2278 20 1 2.3823 -0.0805 -2.0098 21 7 1.0595 -1.7062 -1.7346 22 6 1.0886 -2.0996 -3.0459 23 1 1.8546 -1.7209 -3.7064 24 6 0.1343 -2.9859 -3.5259 25 7 -0.7989 -3.4478 -2.7209 26 14 0.1735 -3.5220 -5.3150 27 1 1.3128 -2.8642 -6.0039 28 1 0.3368 -4.9962 -5.3864 29 1 -1.0975 -3.1321 -5.9766 30 1 -0.3633 0.5030 -0.8962 31 1 -0.3633 0.5247 0.8837 32 1 -0.3634 -1.0276 0.0126 33 1 1.6945 1.9577 0.8837 34 1 3.1505 1.4195 0.0126 35 1 1.7149 1.9502 -0.8962 36 1 2.7181 -0.1228 1.8102 37 1 1.2335 -1.1129 1.8376 38 1 3.3698 -4.4649 -0.2544 39 1 4.8626 -3.7865 0.4380 40 1 4.4814 -5.0763 2.5217 41 1 2.9887 -5.7543 1.8286 42 1 3.7570 -6.5595 -1.0184 43 1 4.3672 -9.5966 1.5873 44 1 4.1553 -0.8859 -0.5880 45 1 3.5026 -2.4227 -1.2429 46 1 0.3718 -2.0466 -1.1412 47 1 -1.4661 -4.0669 -3.0565 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000996583178.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:29:14 Heat of formation + Delta-G solvation = -96.012616 kcal Electronic energy + Delta-G solvation = -30445.368949 eV Core-core repulsion = 26242.014406 eV Total energy + Delta-G solvation = -4203.354543 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -43.38172 -41.22626 -39.75797 -39.35381 -37.54266 -35.69256 -35.58822 -34.58843 -33.16393 -32.53095 -29.44981 -29.21985 -27.97910 -27.03500 -25.63907 -24.43245 -23.63467 -22.97497 -22.31642 -20.28495 -19.81043 -19.44759 -19.00104 -18.09583 -17.94880 -17.49945 -17.22647 -16.95635 -16.79087 -16.45172 -16.18889 -15.84005 -15.57785 -15.33328 -15.13454 -14.93018 -14.79528 -14.16465 -13.90234 -13.79706 -13.55356 -13.41279 -13.18855 -12.96590 -12.88146 -12.80638 -12.68516 -12.51851 -12.24683 -12.07549 -12.02553 -12.00428 -11.76361 -11.53183 -11.41623 -11.36241 -11.27335 -10.93835 -10.80254 -10.53995 -9.64161 -8.86197 -7.87968 -5.14872 0.48778 1.38454 1.50577 1.52822 1.61076 1.70348 1.91003 2.07249 2.20998 2.60583 2.91563 3.37362 3.45689 3.64892 3.81686 3.88712 3.90748 3.94038 4.16554 4.18321 4.29759 4.36353 4.42726 4.50904 4.60989 4.72097 4.77129 4.86164 4.91033 4.91570 4.96949 5.03474 5.04368 5.09957 5.12647 5.20101 5.37741 5.39809 5.48903 5.58421 5.67171 5.74834 5.83920 6.32920 6.33691 6.69373 7.06716 7.23175 7.41066 8.18233 8.39752 9.35409 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.008906 B = 0.004037 C = 0.002962 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3143.054947 B = 6934.807373 C = 9451.401492 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.082 4.082 3 C -0.125 4.125 4 C 0.116 3.884 5 N -0.610 5.610 6 C 0.522 3.478 7 O -0.597 6.597 8 C -0.126 4.126 9 C -0.095 4.095 10 C 0.104 3.896 11 H 0.176 0.824 12 N -0.710 5.710 13 C 0.702 3.298 14 O -0.587 6.587 15 N -0.670 5.670 16 C 0.537 3.463 17 O -0.490 6.490 18 C 0.078 3.922 19 C 0.162 3.838 20 H 0.081 0.919 21 N -0.724 5.724 22 C -0.225 4.225 23 H 0.086 0.914 24 C -0.071 4.071 25 N -0.970 5.970 26 Si 0.959 3.041 27 H -0.258 1.258 28 H -0.303 1.303 29 H -0.305 1.305 30 H 0.048 0.952 31 H 0.062 0.938 32 H 0.026 0.974 33 H 0.067 0.933 34 H 0.075 0.925 35 H 0.060 0.940 36 H 0.084 0.916 37 H 0.045 0.955 38 H 0.097 0.903 39 H 0.137 0.863 40 H 0.098 0.902 41 H 0.055 0.945 42 H 0.449 0.551 43 H 0.440 0.560 44 H 0.101 0.899 45 H 0.081 0.919 46 H 0.373 0.627 47 H 0.245 0.755 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.124 3.283 6.594 17.727 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.083 4.083 3 C -0.182 4.182 4 C -0.007 4.007 5 N -0.341 5.341 6 C 0.313 3.687 7 O -0.479 6.479 8 C -0.165 4.165 9 C -0.134 4.134 10 C -0.004 4.004 11 H 0.193 0.807 12 N -0.376 5.376 13 C 0.402 3.598 14 O -0.463 6.463 15 N -0.341 5.341 16 C 0.323 3.677 17 O -0.360 6.360 18 C -0.047 4.047 19 C 0.052 3.948 20 H 0.099 0.901 21 N -0.363 5.363 22 C -0.357 4.357 23 H 0.104 0.896 24 C -0.263 4.263 25 N -0.622 5.622 26 Si 0.791 3.209 27 H -0.182 1.182 28 H -0.231 1.231 29 H -0.234 1.234 30 H 0.068 0.932 31 H 0.081 0.919 32 H 0.045 0.955 33 H 0.086 0.914 34 H 0.093 0.907 35 H 0.079 0.921 36 H 0.102 0.898 37 H 0.063 0.937 38 H 0.115 0.885 39 H 0.155 0.845 40 H 0.116 0.884 41 H 0.074 0.926 42 H 0.296 0.704 43 H 0.283 0.717 44 H 0.119 0.881 45 H 0.100 0.900 46 H 0.206 0.794 47 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges 15.996 2.795 7.195 17.761 hybrid contribution -1.425 -1.143 -0.885 2.030 sum 14.570 1.652 6.309 15.964 Atomic orbital electron populations 1.21597 0.94862 1.00151 1.01099 1.21757 0.95502 0.96925 0.94156 1.21769 1.01656 0.92240 1.02565 1.22143 0.95328 0.87118 0.96075 1.48767 1.52391 1.14583 1.18397 1.20811 0.80418 0.82254 0.85238 1.90662 1.54908 1.80524 1.21803 1.21596 1.02760 0.92735 0.99417 1.21414 1.00255 0.92657 0.99054 1.22277 0.99979 0.92735 0.85450 0.80675 1.45758 1.59955 1.08013 1.23836 1.16069 0.78680 0.83917 0.81161 1.91049 1.47003 1.55767 1.52526 1.44207 1.53715 1.15575 1.20609 1.20913 0.75864 0.85654 0.85247 1.90851 1.40656 1.84321 1.20203 1.23580 0.98615 1.01065 0.81459 1.21679 0.88731 0.90669 0.93734 0.90084 1.42728 1.32775 1.52383 1.08441 1.19691 1.09092 1.19041 0.87859 0.89610 1.25378 0.98467 1.01638 1.00830 1.69833 1.19040 1.37402 1.35894 0.85272 0.77159 0.77068 0.81447 1.18230 1.23062 1.23360 0.93237 0.91901 0.95501 0.91439 0.90655 0.92103 0.89805 0.93666 0.88458 0.84499 0.88388 0.92601 0.70423 0.71650 0.88079 0.90046 0.79351 0.94631 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.82 7.62 71.98 0.55 -3.27 16 2 C -0.08 -2.19 0.94 -51.29 -0.05 -2.24 16 3 C -0.12 -2.37 8.21 71.98 0.59 -1.78 16 4 C 0.12 3.24 6.28 86.53 0.54 3.78 16 5 N -0.61 -17.39 3.29 -809.03 -2.66 -20.05 16 6 C 0.52 15.82 7.89 87.66 0.69 16.51 16 7 O -0.60 -22.76 16.32 -3.02 -0.05 -22.81 16 8 C -0.13 -2.54 4.55 29.85 0.14 -2.40 16 9 C -0.09 -1.87 4.26 30.59 0.13 -1.74 16 10 C 0.10 1.50 3.65 44.37 0.16 1.67 16 11 H 0.18 1.15 8.14 -2.38 -0.02 1.13 16 12 N -0.71 -12.93 6.04 -459.12 -2.77 -15.70 16 13 C 0.70 16.49 9.00 179.33 1.61 18.11 16 14 O -0.59 -19.16 18.04 -3.83 -0.07 -19.23 16 15 N -0.67 -12.24 5.70 -440.86 -2.51 -14.75 16 16 C 0.54 9.90 8.14 87.94 0.72 10.62 16 17 O -0.49 -11.56 18.02 -2.89 -0.05 -11.62 16 18 C 0.08 1.94 6.64 86.79 0.58 2.51 16 19 C 0.16 5.01 3.16 46.27 0.15 5.16 16 20 H 0.08 2.38 7.80 -2.39 -0.02 2.36 16 21 N -0.72 -31.26 4.60 -316.94 -1.46 -32.72 16 22 C -0.22 -10.85 9.96 84.03 0.84 -10.02 16 23 H 0.09 3.84 7.83 -2.91 -0.02 3.82 16 24 C -0.07 -3.76 5.50 84.86 0.47 -3.29 16 25 N -0.97 -57.03 13.06 21.65 0.28 -56.75 16 26 Si 0.96 43.45 29.55 68.60 2.03 45.47 16 27 H -0.26 -10.60 7.11 99.48 0.71 -9.90 16 28 H -0.30 -14.14 7.11 99.48 0.71 -13.43 16 29 H -0.31 -14.37 7.11 99.48 0.71 -13.67 16 30 H 0.05 1.67 8.14 -2.39 -0.02 1.65 16 31 H 0.06 1.70 8.14 -2.39 -0.02 1.68 16 32 H 0.03 1.06 6.21 -2.38 -0.01 1.04 16 33 H 0.07 1.12 8.14 -2.38 -0.02 1.10 16 34 H 0.07 1.14 8.14 -2.39 -0.02 1.12 16 35 H 0.06 1.18 8.14 -2.39 -0.02 1.16 16 36 H 0.08 1.93 7.68 -2.39 -0.02 1.92 16 37 H 0.04 1.50 7.60 -2.39 -0.02 1.48 16 38 H 0.10 2.12 7.31 -2.39 -0.02 2.10 16 39 H 0.14 1.63 8.14 -2.39 -0.02 1.61 16 40 H 0.10 1.98 8.10 -2.39 -0.02 1.96 16 41 H 0.06 1.45 8.10 -2.39 -0.02 1.43 16 42 H 0.45 7.85 8.51 -92.72 -0.79 7.06 16 43 H 0.44 6.42 8.96 -92.71 -0.83 5.59 16 44 H 0.10 1.78 8.14 -2.39 -0.02 1.76 16 45 H 0.08 2.11 7.24 -2.39 -0.02 2.09 16 46 H 0.37 18.58 5.67 -92.71 -0.53 18.05 16 47 H 0.24 14.33 8.31 -92.70 -0.77 13.56 16 Total: -1.00 -76.57 386.21 -1.27 -77.84 By element: Atomic # 1 Polarization: 37.81 SS G_CDS: -1.12 Total: 36.69 kcal Atomic # 6 Polarization: 26.50 SS G_CDS: 7.11 Total: 33.62 kcal Atomic # 7 Polarization: -130.85 SS G_CDS: -9.12 Total: -139.97 kcal Atomic # 8 Polarization: -53.48 SS G_CDS: -0.17 Total: -53.65 kcal Atomic # 14 Polarization: 43.45 SS G_CDS: 2.03 Total: 45.47 kcal Total: -76.57 -1.27 -77.84 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000996583178.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.173 kcal (2) G-P(sol) polarization free energy of solvation -76.567 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.740 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.272 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.840 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.013 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds