Wall clock time and date at job start Tue Mar 31 2020 20:29:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.47315 * 126.69277 * 2 1 4 4 C 1.51580 * 103.59535 * 179.76354 * 3 2 1 5 5 O 1.21233 * 127.15802 * 180.24096 * 4 3 2 6 6 N 1.34766 * 105.68022 * 0.32273 * 4 3 2 7 7 C 1.46506 * 124.17270 * 179.97438 * 6 4 3 8 8 C 1.50701 * 109.47197 * 269.70073 * 7 6 4 9 9 O 1.21278 * 119.99952 * 0.02562 * 8 7 6 10 10 N 1.34777 * 119.99856 * 180.02562 * 8 7 6 11 11 C 1.47022 * 125.64713 * 0.02562 * 10 8 7 12 12 C 1.54329 * 107.26958 * 178.90557 * 11 10 8 13 13 H 1.09003 * 110.71806 * 219.26601 * 12 11 10 14 14 N 1.46506 * 110.71899 * 96.17352 * 12 11 10 15 15 C 1.36934 * 120.00324 * 88.83992 * 14 12 11 16 16 H 1.07997 * 119.99709 * 0.02562 * 15 14 12 17 17 C 1.38805 * 120.00305 * 179.97438 * 15 14 12 18 18 N 1.31620 * 120.00381 * 180.02562 * 17 15 14 19 19 Si 1.86803 * 119.99798 * 0.02562 * 17 15 14 20 20 H 1.48497 * 109.47115 * 89.99600 * 19 17 15 21 21 H 1.48495 * 109.47187 * 209.99433 * 19 17 15 22 22 H 1.48496 * 109.47261 * 329.99509 * 19 17 15 23 23 C 1.55154 * 103.10429 * 337.72099 * 12 11 10 24 24 C 1.52994 * 111.00734 * 153.66476 * 23 12 11 25 25 C 1.53003 * 111.00394 * 277.51768 * 23 12 11 26 26 C 1.47421 * 125.64796 * 179.97438 * 10 8 7 27 27 C 1.33788 * 111.65134 * 359.65528 * 6 4 3 28 28 O 1.21538 * 123.77472 * 180.23154 * 27 6 4 29 29 H 1.08996 * 109.47395 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.47523 * 300.02109 * 1 2 3 31 31 H 1.09004 * 109.46758 * 60.01651 * 1 2 3 32 32 H 1.08995 * 110.59914 * 298.49222 * 3 2 1 33 33 H 1.09005 * 110.59535 * 61.27781 * 3 2 1 34 34 H 1.09003 * 109.47103 * 149.70056 * 7 6 4 35 35 H 1.09002 * 109.47311 * 29.70409 * 7 6 4 36 36 H 1.08997 * 109.88227 * 59.49059 * 11 10 8 37 37 H 1.08996 * 110.01406 * 298.39318 * 11 10 8 38 38 H 0.97002 * 119.99472 * 268.83993 * 14 12 11 39 39 H 0.97000 * 120.00158 * 180.02562 * 18 17 15 40 40 H 1.08996 * 109.47032 * 59.99967 * 24 23 12 41 41 H 1.08994 * 109.47201 * 180.02562 * 24 23 12 42 42 H 1.08999 * 109.47026 * 299.99583 * 24 23 12 43 43 H 1.09004 * 109.47140 * 59.99355 * 25 23 12 44 44 H 1.08995 * 109.47158 * 179.97438 * 25 23 12 45 45 H 1.09000 * 109.47158 * 299.99814 * 25 23 12 46 46 H 1.08997 * 110.36837 * 322.99966 * 26 10 8 47 47 H 1.09000 * 110.37112 * 85.21434 * 26 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.3452 1.1812 0.0000 4 6 3.7395 0.5866 0.0061 5 8 4.7921 1.1881 0.0121 6 7 3.5656 -0.7498 0.0015 7 6 4.6613 -1.7222 0.0044 8 6 5.0393 -2.0573 -1.4155 9 8 4.4517 -1.5349 -2.3388 10 7 6.0304 -2.9376 -1.6591 11 6 6.8213 -3.6413 -0.6389 12 6 7.8140 -4.5601 -1.3821 13 1 7.9140 -5.5159 -0.8677 14 7 9.1191 -3.9089 -1.5202 15 6 10.0631 -4.0522 -0.5386 16 1 9.8456 -4.6455 0.3372 17 6 11.2998 -3.4357 -0.6696 18 7 12.2073 -3.5737 0.2736 19 14 11.6762 -2.4099 -2.1848 20 1 11.2772 -1.0006 -1.9402 21 1 13.1315 -2.4693 -2.4738 22 1 10.9189 -2.9444 -3.3450 23 6 7.1460 -4.7505 -2.7695 24 6 8.1914 -5.0546 -3.8444 25 6 6.0797 -5.8466 -2.7189 26 6 6.5003 -3.3550 -2.9926 27 6 2.2688 -1.0788 0.0009 28 8 1.8623 -2.2241 0.0012 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3634 0.5141 0.8898 31 1 -0.3633 0.5136 -0.8902 32 1 2.1841 1.7796 -0.8967 33 1 2.1812 1.7817 0.8948 34 1 4.3415 -2.6285 0.5187 35 1 5.5230 -1.2973 0.5191 36 1 6.1641 -4.2394 -0.0077 37 1 7.3676 -2.9221 -0.0287 38 1 9.3145 -3.3763 -2.3070 39 1 13.0714 -3.1426 0.1822 40 1 8.7242 -5.9693 -3.5846 41 1 7.6962 -5.1831 -4.8068 42 1 8.8986 -4.2276 -3.9077 43 1 5.3115 -5.5731 -1.9956 44 1 5.6273 -5.9590 -3.7041 45 1 6.5406 -6.7883 -2.4207 46 1 5.6609 -3.4320 -3.6837 47 1 7.2397 -2.6498 -3.3723 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000996585859.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:29:45 Heat of formation + Delta-G solvation = -66.042325 kcal Electronic energy + Delta-G solvation = -30776.296168 eV Core-core repulsion = 26574.241234 eV Total energy + Delta-G solvation = -4202.054934 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -43.47663 -41.41244 -39.80315 -39.44674 -37.33169 -36.25182 -35.86900 -34.72426 -33.04333 -31.40171 -29.79545 -29.09992 -28.11405 -27.54252 -26.64251 -25.43526 -23.55623 -23.09969 -21.76330 -20.66872 -20.35749 -19.42761 -18.86581 -18.42827 -17.87287 -17.71087 -17.34912 -16.69668 -16.57534 -16.30149 -16.05477 -15.85355 -15.51379 -15.38062 -15.12940 -15.06615 -14.75129 -14.65996 -14.37166 -13.84689 -13.73641 -13.51719 -13.44351 -13.40493 -13.22769 -13.21027 -12.92493 -12.83692 -12.75274 -12.18164 -12.15591 -11.96604 -11.94659 -11.74915 -11.61393 -11.43350 -11.34665 -11.02717 -10.78659 -10.00600 -9.77731 -9.33804 -8.01689 -5.34287 0.53018 0.85610 1.34856 1.35043 1.37971 1.43694 1.65723 1.95897 2.09119 2.46899 2.96321 3.19496 3.28403 3.47712 3.58559 3.60097 3.74541 3.94099 4.01825 4.06363 4.18789 4.20801 4.23911 4.33769 4.40016 4.53664 4.55697 4.69169 4.70152 4.84767 4.86572 4.88024 4.93445 4.94480 5.03147 5.04900 5.15642 5.26406 5.35414 5.36405 5.48560 5.80301 5.96618 6.22572 6.22907 6.35095 6.84465 6.92998 7.07768 7.83397 8.00612 9.19302 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.014811 B = 0.003294 C = 0.002949 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1890.026369 B = 8497.930398 C = 9493.796586 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.113 3.887 2 N -0.621 5.621 3 C 0.079 3.921 4 C 0.515 3.485 5 O -0.503 6.503 6 N -0.569 5.569 7 C 0.105 3.895 8 C 0.512 3.488 9 O -0.579 6.579 10 N -0.601 5.601 11 C 0.073 3.927 12 C 0.175 3.825 13 H 0.087 0.913 14 N -0.739 5.739 15 C -0.219 4.219 16 H 0.071 0.929 17 C -0.055 4.055 18 N -0.979 5.979 19 Si 0.935 3.065 20 H -0.290 1.290 21 H -0.298 1.298 22 H -0.250 1.250 23 C -0.078 4.078 24 C -0.126 4.126 25 C -0.123 4.123 26 C 0.117 3.883 27 C 0.696 3.304 28 O -0.580 6.580 29 H 0.074 0.926 30 H 0.100 0.900 31 H 0.089 0.911 32 H 0.150 0.850 33 H 0.166 0.834 34 H 0.142 0.858 35 H 0.133 0.867 36 H 0.095 0.905 37 H 0.065 0.935 38 H 0.363 0.637 39 H 0.256 0.744 40 H 0.064 0.936 41 H 0.074 0.926 42 H 0.039 0.961 43 H 0.053 0.947 44 H 0.069 0.931 45 H 0.072 0.928 46 H 0.077 0.923 47 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.658 5.613 -1.964 26.338 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.026 4.026 2 N -0.359 5.359 3 C -0.045 4.045 4 C 0.305 3.695 5 O -0.375 6.375 6 N -0.314 5.314 7 C -0.020 4.020 8 C 0.300 3.700 9 O -0.460 6.460 10 N -0.334 5.334 11 C -0.052 4.052 12 C 0.065 3.935 13 H 0.105 0.895 14 N -0.382 5.382 15 C -0.350 4.350 16 H 0.089 0.911 17 C -0.247 4.247 18 N -0.630 5.630 19 Si 0.764 3.236 20 H -0.217 1.217 21 H -0.224 1.224 22 H -0.175 1.175 23 C -0.079 4.079 24 C -0.183 4.183 25 C -0.181 4.181 26 C -0.005 4.005 27 C 0.398 3.602 28 O -0.456 6.456 29 H 0.093 0.907 30 H 0.118 0.882 31 H 0.108 0.892 32 H 0.167 0.833 33 H 0.183 0.817 34 H 0.160 0.840 35 H 0.151 0.849 36 H 0.113 0.887 37 H 0.084 0.916 38 H 0.198 0.802 39 H 0.065 0.935 40 H 0.083 0.917 41 H 0.093 0.907 42 H 0.058 0.942 43 H 0.073 0.927 44 H 0.088 0.912 45 H 0.091 0.909 46 H 0.095 0.905 47 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -25.679 5.554 -2.226 26.367 hybrid contribution 1.275 0.734 -0.692 1.626 sum -24.404 6.288 -2.918 25.369 Atomic orbital electron populations 1.21855 0.71774 1.04379 1.04632 1.47678 1.07803 1.04542 1.75894 1.22705 0.82456 0.89567 1.09781 1.21724 0.93108 0.81644 0.73048 1.90836 1.32809 1.66456 1.47387 1.46049 1.07711 1.09466 1.68138 1.21463 0.90764 0.95388 0.94401 1.20776 0.78914 0.78363 0.91975 1.90652 1.54531 1.53651 1.47131 1.48402 1.33608 1.41964 1.09396 1.23189 0.94070 0.96543 0.91414 1.21441 0.83192 0.94595 0.94223 0.89508 1.42807 1.12446 1.60510 1.22408 1.19036 0.92720 1.24438 0.98798 0.91080 1.25289 0.96705 1.02448 1.00264 1.69838 1.06894 1.50312 1.35968 0.85723 0.76988 0.79138 0.81761 1.21729 1.22443 1.17507 1.22101 0.96258 0.93936 0.95650 1.21592 0.97375 1.01773 0.97604 1.21641 0.96812 0.97020 1.02609 1.22407 0.98198 0.95362 0.84549 1.16005 0.80773 0.85875 0.77551 1.90936 1.77275 1.20352 1.57068 0.90672 0.88200 0.89221 0.83275 0.81694 0.84006 0.84916 0.88728 0.91635 0.80237 0.93507 0.91694 0.90707 0.94208 0.92740 0.91198 0.90859 0.90483 0.93051 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 0.88 11.33 127.77 1.45 2.32 16 2 N -0.62 -9.57 3.42 -866.96 -2.96 -12.53 16 3 C 0.08 0.90 7.66 85.76 0.66 1.55 16 4 C 0.51 12.02 8.31 87.94 0.73 12.75 16 5 O -0.50 -15.38 17.75 -2.88 -0.05 -15.43 16 6 N -0.57 -14.73 2.09 -777.21 -1.63 -16.36 16 7 C 0.11 2.82 5.37 85.63 0.46 3.28 16 8 C 0.51 16.97 7.92 87.66 0.69 17.66 16 9 O -0.58 -22.77 16.69 -3.02 -0.05 -22.82 16 10 N -0.60 -18.85 3.32 -810.85 -2.69 -21.54 16 11 C 0.07 2.19 5.91 86.73 0.51 2.70 16 12 C 0.18 5.77 2.86 46.18 0.13 5.90 16 13 H 0.09 2.82 8.01 -2.39 -0.02 2.80 16 14 N -0.74 -31.41 4.36 -317.32 -1.38 -32.79 16 15 C -0.22 -11.51 10.45 84.03 0.88 -10.63 16 16 H 0.07 4.01 8.06 -2.91 -0.02 3.98 16 17 C -0.06 -3.13 5.50 84.86 0.47 -2.67 16 18 N -0.98 -60.99 13.97 21.65 0.30 -60.68 16 19 Si 0.93 44.98 27.74 68.60 1.90 46.89 16 20 H -0.29 -14.18 7.11 99.48 0.71 -13.47 16 21 H -0.30 -14.61 7.11 99.48 0.71 -13.90 16 22 H -0.25 -10.82 6.52 99.48 0.65 -10.17 16 23 C -0.08 -2.13 0.84 -50.62 -0.04 -2.17 16 24 C -0.13 -3.41 8.23 71.98 0.59 -2.82 16 25 C -0.12 -2.69 8.58 71.98 0.62 -2.07 16 26 C 0.12 3.58 5.83 87.02 0.51 4.08 16 27 C 0.70 17.53 8.31 179.44 1.49 19.03 16 28 O -0.58 -18.41 16.92 -3.84 -0.06 -18.48 16 29 H 0.07 0.86 7.67 -2.39 -0.02 0.85 16 30 H 0.10 0.19 8.14 -2.39 -0.02 0.17 16 31 H 0.09 0.35 8.14 -2.38 -0.02 0.33 16 32 H 0.15 1.04 8.14 -2.39 -0.02 1.03 16 33 H 0.17 0.58 8.14 -2.38 -0.02 0.56 16 34 H 0.14 3.26 7.86 -2.39 -0.02 3.24 16 35 H 0.13 3.36 8.00 -2.39 -0.02 3.34 16 36 H 0.09 2.28 8.14 -2.39 -0.02 2.26 16 37 H 0.07 2.24 8.04 -2.39 -0.02 2.22 16 38 H 0.36 15.58 4.07 -92.71 -0.38 15.20 16 39 H 0.26 15.39 8.31 -92.71 -0.77 14.62 16 40 H 0.06 1.78 8.14 -2.39 -0.02 1.76 16 41 H 0.07 1.64 8.14 -2.39 -0.02 1.62 16 42 H 0.04 1.25 6.44 -2.39 -0.02 1.23 16 43 H 0.05 1.22 7.91 -2.38 -0.02 1.20 16 44 H 0.07 1.35 8.14 -2.39 -0.02 1.33 16 45 H 0.07 1.46 8.14 -2.39 -0.02 1.44 16 46 H 0.08 2.29 7.95 -2.39 -0.02 2.27 16 47 H 0.05 1.71 8.00 -2.39 -0.02 1.69 16 Total: -1.00 -82.29 387.71 3.07 -79.22 By element: Atomic # 1 Polarization: 25.06 SS G_CDS: 0.55 Total: 25.61 kcal Atomic # 6 Polarization: 39.78 SS G_CDS: 9.15 Total: 48.93 kcal Atomic # 7 Polarization: -135.55 SS G_CDS: -8.36 Total: -143.91 kcal Atomic # 8 Polarization: -56.57 SS G_CDS: -0.17 Total: -56.73 kcal Atomic # 14 Polarization: 44.98 SS G_CDS: 1.90 Total: 46.89 kcal Total: -82.29 3.07 -79.22 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000996585859.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.176 kcal (2) G-P(sol) polarization free energy of solvation -82.289 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.114 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.071 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.218 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.042 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds