Wall clock time and date at job start Tue Mar 31 2020 21:31:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52994 * 110.53755 * 2 1 4 4 N 1.47316 * 110.60207 * 122.83377 * 2 1 3 5 5 C 1.34519 * 106.62230 * 118.52169 * 4 2 1 6 6 O 1.21542 * 123.76979 * 179.97438 * 5 4 2 7 7 N 1.33796 * 112.45893 * 0.02562 * 5 4 2 8 8 C 1.46496 * 124.17843 * 179.97438 * 7 5 4 9 9 C 1.50706 * 109.47106 * 90.02250 * 8 7 5 10 10 O 1.21279 * 119.99507 * 0.02562 * 9 8 7 11 11 N 1.34774 * 120.00020 * 179.97438 * 9 8 7 12 12 C 1.46923 * 120.63150 * 359.72421 * 11 9 8 13 13 C 1.52767 * 109.00740 * 233.58251 * 12 11 9 14 14 C 1.53040 * 109.38405 * 305.58916 * 13 12 11 15 15 N 1.46498 * 109.45093 * 181.25446 * 14 13 12 16 16 C 1.36933 * 120.00366 * 84.93281 * 15 14 13 17 17 H 1.08000 * 119.99414 * 0.02562 * 16 15 14 18 18 C 1.38807 * 120.00404 * 179.97438 * 16 15 14 19 19 N 1.31623 * 119.99838 * 0.02562 * 18 16 15 20 20 Si 1.86797 * 120.00179 * 180.02562 * 18 16 15 21 21 H 1.48504 * 109.47120 * 60.00298 * 20 18 16 22 22 H 1.48501 * 109.47082 * 180.02562 * 20 18 16 23 23 H 1.48498 * 109.47230 * 300.00248 * 20 18 16 24 24 C 1.53038 * 109.53948 * 61.23711 * 14 13 12 25 25 C 1.46923 * 120.62774 * 179.97438 * 11 9 8 26 26 C 1.34770 * 111.64197 * 0.22671 * 7 5 4 27 27 O 1.21234 * 127.15602 * 179.73716 * 26 7 5 28 28 H 1.09006 * 109.47011 * 298.62071 * 1 2 3 29 29 H 1.08992 * 109.47639 * 58.62526 * 1 2 3 30 30 H 1.09003 * 109.47220 * 178.62595 * 1 2 3 31 31 H 1.08995 * 109.47405 * 181.37519 * 3 2 1 32 32 H 1.09005 * 109.47309 * 301.37958 * 3 2 1 33 33 H 1.09006 * 109.46994 * 61.37522 * 3 2 1 34 34 H 0.97002 * 126.68191 * 298.49060 * 4 2 1 35 35 H 1.09001 * 109.47001 * 330.02541 * 8 7 5 36 36 H 1.09000 * 109.47574 * 210.02757 * 8 7 5 37 37 H 1.08997 * 109.58651 * 353.41526 * 12 11 9 38 38 H 1.08992 * 109.58942 * 113.84358 * 12 11 9 39 39 H 1.08998 * 109.56180 * 185.54829 * 13 12 11 40 40 H 1.09007 * 109.38303 * 65.51528 * 13 12 11 41 41 H 1.09003 * 109.45867 * 301.21821 * 14 13 12 42 42 H 0.97005 * 119.99678 * 264.93949 * 15 14 13 43 43 H 0.96994 * 119.99774 * 179.97438 * 19 18 16 44 44 H 1.09000 * 109.50221 * 178.68216 * 24 14 13 45 45 H 1.09001 * 109.52295 * 58.59924 * 24 14 13 46 46 H 1.08995 * 109.59333 * 246.15278 * 25 11 9 47 47 H 1.08998 * 109.59019 * 6.44429 * 25 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0667 1.4327 0.0000 4 7 2.0483 -0.7477 1.1587 5 6 2.7598 -1.7772 0.6653 6 8 3.3290 -2.5983 1.3574 7 7 2.7718 -1.7956 -0.6725 8 6 3.4688 -2.8034 -1.4754 9 6 2.5393 -3.9573 -1.7506 10 8 1.4061 -3.9393 -1.3188 11 7 2.9670 -5.0087 -2.4772 12 6 4.3347 -5.0416 -3.0130 13 6 4.2735 -5.2972 -4.5179 14 6 3.4627 -6.5674 -4.7849 15 7 3.4284 -6.8304 -6.2256 16 6 4.4536 -7.5153 -6.8213 17 1 5.2873 -7.8620 -6.2288 18 6 4.4208 -7.7650 -8.1863 19 7 3.4044 -7.3429 -8.9083 20 14 5.8190 -8.7000 -8.9987 21 1 5.9315 -10.0498 -8.3898 22 1 5.5465 -8.8334 -10.4524 23 1 7.0909 -7.9597 -8.7999 24 6 2.0349 -6.3817 -4.2663 25 6 2.0727 -6.1412 -2.7533 26 6 2.0680 -0.7694 -1.1901 27 8 1.8988 -0.5156 -2.3634 28 1 -0.3633 0.4923 0.9021 29 1 -0.3634 0.5350 -0.8773 30 1 -0.3634 -1.0274 -0.0246 31 1 3.1562 1.4126 -0.0247 32 1 1.6931 1.9607 -0.8774 33 1 1.7331 1.9457 0.9021 34 1 1.9049 -0.5381 2.0948 35 1 4.3418 -3.1621 -0.9302 36 1 3.7868 -2.3600 -2.4190 37 1 4.8236 -4.0857 -2.8257 38 1 4.8964 -5.8422 -2.5318 39 1 5.2836 -5.4214 -4.9083 40 1 3.7951 -4.4501 -5.0095 41 1 3.9283 -7.4097 -4.2730 42 1 2.6793 -6.5192 -6.7577 43 1 3.3817 -7.5170 -9.8622 44 1 1.4515 -7.2778 -4.4777 45 1 1.5767 -5.5245 -4.7597 46 1 2.4465 -7.0331 -2.2506 47 1 1.0701 -5.9116 -2.3925 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000997256885.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:31:03 Heat of formation + Delta-G solvation = -59.302007 kcal Electronic energy + Delta-G solvation = -30281.819700 eV Core-core repulsion = 26080.057048 eV Total energy + Delta-G solvation = -4201.762652 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -42.87849 -40.06565 -38.88726 -37.53951 -36.85685 -35.45057 -34.54439 -32.25498 -31.83891 -31.04543 -29.57906 -28.57308 -28.03298 -25.02446 -24.45344 -23.09414 -22.93618 -22.07012 -20.99418 -20.22835 -19.01600 -18.26319 -17.77989 -17.07490 -16.75194 -16.46905 -16.09956 -15.99850 -15.39418 -15.19492 -14.85674 -14.78231 -14.43579 -14.02864 -13.80056 -13.68156 -13.56772 -13.41634 -13.21037 -13.13464 -12.78892 -12.75278 -12.57746 -12.22548 -12.09255 -11.97831 -11.61777 -11.11624 -10.98486 -10.89582 -10.84160 -10.65410 -10.50681 -10.42767 -10.28064 -9.91008 -9.85787 -9.70351 -9.56806 -8.92901 -8.58253 -7.00416 -5.79247 -3.08849 1.35030 1.76126 2.50667 2.62916 2.74942 3.10138 3.41721 3.46337 3.47511 3.52673 4.05787 4.26788 4.32873 4.55432 4.58821 4.84553 4.94961 4.97015 5.02776 5.03408 5.13847 5.16511 5.28393 5.30035 5.36324 5.38343 5.45814 5.50998 5.59627 5.62239 5.69155 5.90885 5.96119 6.19475 6.32351 6.35403 6.42469 6.47398 6.56508 6.71028 6.85120 7.00675 7.07016 7.37513 7.65868 7.81432 8.06794 8.38895 9.50004 10.07296 10.41907 11.43198 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.023423 B = 0.002356 C = 0.002308 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1195.135364 B =11883.537318 C =12126.197694 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.121 3.879 3 C -0.147 4.147 4 N -0.720 5.720 5 C 0.710 3.290 6 O -0.541 6.541 7 N -0.561 5.561 8 C 0.099 3.901 9 C 0.504 3.496 10 O -0.540 6.540 11 N -0.600 5.600 12 C 0.105 3.895 13 C -0.153 4.153 14 C 0.179 3.821 15 N -0.724 5.724 16 C -0.241 4.241 17 H 0.070 0.930 18 C -0.013 4.013 19 N -0.932 5.932 20 Si 0.907 3.093 21 H -0.286 1.286 22 H -0.291 1.291 23 H -0.286 1.286 24 C -0.139 4.139 25 C 0.117 3.883 26 C 0.534 3.466 27 O -0.457 6.457 28 H 0.079 0.921 29 H 0.084 0.916 30 H 0.072 0.928 31 H 0.067 0.933 32 H 0.085 0.915 33 H 0.080 0.920 34 H 0.439 0.561 35 H 0.127 0.873 36 H 0.127 0.873 37 H 0.075 0.925 38 H 0.073 0.927 39 H 0.078 0.922 40 H 0.061 0.939 41 H 0.049 0.951 42 H 0.384 0.616 43 H 0.256 0.744 44 H 0.077 0.923 45 H 0.063 0.937 46 H 0.069 0.931 47 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.603 17.554 21.602 27.957 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.030 3.970 3 C -0.205 4.205 4 N -0.385 5.385 5 C 0.411 3.589 6 O -0.414 6.414 7 N -0.307 5.307 8 C -0.026 4.026 9 C 0.290 3.710 10 O -0.417 6.417 11 N -0.333 5.333 12 C -0.018 4.018 13 C -0.194 4.194 14 C 0.069 3.931 15 N -0.364 5.364 16 C -0.372 4.372 17 H 0.088 0.912 18 C -0.209 4.209 19 N -0.580 5.580 20 Si 0.738 3.262 21 H -0.213 1.213 22 H -0.217 1.217 23 H -0.213 1.213 24 C -0.178 4.178 25 C -0.005 4.005 26 C 0.320 3.680 27 O -0.324 6.324 28 H 0.098 0.902 29 H 0.103 0.897 30 H 0.091 0.909 31 H 0.086 0.914 32 H 0.104 0.896 33 H 0.098 0.902 34 H 0.283 0.717 35 H 0.145 0.855 36 H 0.144 0.856 37 H 0.093 0.907 38 H 0.091 0.909 39 H 0.097 0.903 40 H 0.080 0.920 41 H 0.067 0.933 42 H 0.218 0.782 43 H 0.066 0.934 44 H 0.096 0.904 45 H 0.082 0.918 46 H 0.087 0.913 47 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -2.798 17.068 21.387 27.505 hybrid contribution 0.584 -0.406 -0.436 0.835 sum -2.214 16.662 20.950 26.860 Atomic orbital electron populations 1.22003 0.89929 1.04399 1.04247 1.21466 0.97458 0.94068 0.83995 1.22012 1.02077 0.91871 1.04509 1.45619 1.54906 1.28950 1.09023 1.15748 0.79642 0.82077 0.81448 1.91019 1.48563 1.41169 1.60645 1.45877 1.49792 1.27168 1.07819 1.21564 0.95258 0.87936 0.97859 1.20571 0.88308 0.83508 0.78594 1.90684 1.19710 1.79512 1.51838 1.48111 1.14515 1.19279 1.51433 1.21859 0.81595 1.01981 0.96412 1.22627 1.03048 1.01540 0.92197 1.20155 0.92056 0.93946 0.86954 1.42427 1.25295 1.66784 1.01888 1.19179 0.99338 1.27572 0.91151 0.91197 1.24756 0.98114 1.01538 0.96482 1.69654 1.30912 1.51154 1.06302 0.86276 0.81689 0.79762 0.78488 1.21259 1.21718 1.21267 1.22221 0.99376 1.02456 0.93742 1.21656 0.94834 0.87527 0.96498 1.20797 0.76897 0.80282 0.90034 1.90826 1.55833 1.69306 1.16479 0.90219 0.89696 0.90902 0.91358 0.89592 0.90152 0.71664 0.85506 0.85551 0.90715 0.90869 0.90336 0.92044 0.93311 0.78234 0.93414 0.90434 0.91781 0.91312 0.89393 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.92 8.99 37.16 0.33 -0.59 16 2 C 0.12 0.88 1.37 -132.09 -0.18 0.70 16 3 C -0.15 -0.67 8.98 37.15 0.33 -0.34 16 4 N -0.72 -5.49 5.90 -52.94 -0.31 -5.80 16 5 C 0.71 8.39 8.62 -88.02 -0.76 7.63 16 6 O -0.54 -8.08 17.48 5.33 0.09 -7.98 16 7 N -0.56 -6.68 2.09 -122.02 -0.26 -6.93 16 8 C 0.10 1.14 4.53 -5.19 -0.02 1.12 16 9 C 0.50 7.47 7.77 -10.98 -0.09 7.39 16 10 O -0.54 -9.71 15.84 5.56 0.09 -9.62 16 11 N -0.60 -8.41 2.98 -173.01 -0.52 -8.92 16 12 C 0.10 1.29 6.31 -3.93 -0.02 1.26 16 13 C -0.15 -2.46 5.64 -26.83 -0.15 -2.62 16 14 C 0.18 3.36 2.73 -67.89 -0.19 3.17 16 15 N -0.72 -17.59 5.12 -53.39 -0.27 -17.86 16 16 C -0.24 -6.49 9.93 -15.06 -0.15 -6.64 16 17 H 0.07 1.81 7.83 -52.49 -0.41 1.40 16 18 C -0.01 -0.36 5.50 -17.43 -0.10 -0.45 16 19 N -0.93 -27.90 13.06 55.49 0.72 -27.18 16 20 Si 0.91 22.03 29.55 -169.99 -5.02 17.00 16 21 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 22 H -0.29 -7.18 7.11 56.52 0.40 -6.77 16 23 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 24 C -0.14 -2.29 5.55 -26.59 -0.15 -2.44 16 25 C 0.12 1.70 6.44 -3.69 -0.02 1.68 16 26 C 0.53 6.06 6.99 -10.55 -0.07 5.99 16 27 O -0.46 -6.36 17.75 5.60 0.10 -6.27 16 28 H 0.08 0.29 8.14 -51.93 -0.42 -0.14 16 29 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 30 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 31 H 0.07 0.34 8.14 -51.93 -0.42 -0.09 16 32 H 0.09 0.38 8.14 -51.93 -0.42 -0.04 16 33 H 0.08 0.19 8.14 -51.93 -0.42 -0.23 16 34 H 0.44 2.11 8.96 -40.82 -0.37 1.75 16 35 H 0.13 1.22 7.67 -51.93 -0.40 0.82 16 36 H 0.13 1.26 7.54 -51.93 -0.39 0.87 16 37 H 0.07 0.71 5.93 -51.93 -0.31 0.40 16 38 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 39 H 0.08 1.33 8.14 -51.93 -0.42 0.91 16 40 H 0.06 1.06 8.14 -51.92 -0.42 0.64 16 41 H 0.05 0.93 8.08 -51.93 -0.42 0.51 16 42 H 0.38 10.10 7.80 -40.82 -0.32 9.78 16 43 H 0.26 7.45 8.31 -40.82 -0.34 7.12 16 44 H 0.08 1.29 8.14 -51.93 -0.42 0.87 16 45 H 0.06 1.13 8.14 -51.93 -0.42 0.70 16 46 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 47 H 0.09 1.34 7.00 -51.93 -0.36 0.98 16 LS Contribution 387.29 15.07 5.84 5.84 Total: -1.00 -36.12 387.29 -7.96 -44.08 By element: Atomic # 1 Polarization: 14.97 SS G_CDS: -7.18 Total: 7.79 kcal Atomic # 6 Polarization: 17.10 SS G_CDS: -1.23 Total: 15.86 kcal Atomic # 7 Polarization: -66.07 SS G_CDS: -0.63 Total: -66.70 kcal Atomic # 8 Polarization: -24.15 SS G_CDS: 0.28 Total: -23.87 kcal Atomic # 14 Polarization: 22.03 SS G_CDS: -5.02 Total: 17.00 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -36.12 -7.96 -44.08 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000997256885.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.223 kcal (2) G-P(sol) polarization free energy of solvation -36.122 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.346 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.956 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.079 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.302 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds