Wall clock time and date at job start Tue Mar 31 2020 21:31:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52994 * 110.53755 * 2 1 4 4 N 1.47316 * 110.60207 * 122.83377 * 2 1 3 5 5 C 1.34519 * 106.62230 * 118.52169 * 4 2 1 6 6 O 1.21542 * 123.76979 * 179.97438 * 5 4 2 7 7 N 1.33796 * 112.45893 * 0.02562 * 5 4 2 8 8 C 1.46496 * 124.17843 * 179.97438 * 7 5 4 9 9 C 1.50706 * 109.47106 * 90.02250 * 8 7 5 10 10 O 1.21279 * 119.99507 * 0.02562 * 9 8 7 11 11 N 1.34774 * 120.00020 * 179.97438 * 9 8 7 12 12 C 1.46923 * 120.63150 * 359.72421 * 11 9 8 13 13 C 1.52767 * 109.00740 * 233.58251 * 12 11 9 14 14 C 1.53040 * 109.38405 * 305.58916 * 13 12 11 15 15 N 1.46498 * 109.45093 * 181.25446 * 14 13 12 16 16 C 1.36933 * 120.00366 * 84.93281 * 15 14 13 17 17 H 1.08000 * 119.99414 * 0.02562 * 16 15 14 18 18 C 1.38807 * 120.00404 * 179.97438 * 16 15 14 19 19 N 1.31623 * 119.99838 * 0.02562 * 18 16 15 20 20 Si 1.86797 * 120.00179 * 180.02562 * 18 16 15 21 21 H 1.48504 * 109.47120 * 60.00298 * 20 18 16 22 22 H 1.48501 * 109.47082 * 180.02562 * 20 18 16 23 23 H 1.48498 * 109.47230 * 300.00248 * 20 18 16 24 24 C 1.53038 * 109.53948 * 61.23711 * 14 13 12 25 25 C 1.46923 * 120.62774 * 179.97438 * 11 9 8 26 26 C 1.34770 * 111.64197 * 0.22671 * 7 5 4 27 27 O 1.21234 * 127.15602 * 179.73716 * 26 7 5 28 28 H 1.09006 * 109.47011 * 298.62071 * 1 2 3 29 29 H 1.08992 * 109.47639 * 58.62526 * 1 2 3 30 30 H 1.09003 * 109.47220 * 178.62595 * 1 2 3 31 31 H 1.08995 * 109.47405 * 181.37519 * 3 2 1 32 32 H 1.09005 * 109.47309 * 301.37958 * 3 2 1 33 33 H 1.09006 * 109.46994 * 61.37522 * 3 2 1 34 34 H 0.97002 * 126.68191 * 298.49060 * 4 2 1 35 35 H 1.09001 * 109.47001 * 330.02541 * 8 7 5 36 36 H 1.09000 * 109.47574 * 210.02757 * 8 7 5 37 37 H 1.08997 * 109.58651 * 353.41526 * 12 11 9 38 38 H 1.08992 * 109.58942 * 113.84358 * 12 11 9 39 39 H 1.08998 * 109.56180 * 185.54829 * 13 12 11 40 40 H 1.09007 * 109.38303 * 65.51528 * 13 12 11 41 41 H 1.09003 * 109.45867 * 301.21821 * 14 13 12 42 42 H 0.97005 * 119.99678 * 264.93949 * 15 14 13 43 43 H 0.96994 * 119.99774 * 179.97438 * 19 18 16 44 44 H 1.09000 * 109.50221 * 178.68216 * 24 14 13 45 45 H 1.09001 * 109.52295 * 58.59924 * 24 14 13 46 46 H 1.08995 * 109.59333 * 246.15278 * 25 11 9 47 47 H 1.08998 * 109.59019 * 6.44429 * 25 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0667 1.4327 0.0000 4 7 2.0483 -0.7477 1.1587 5 6 2.7598 -1.7772 0.6653 6 8 3.3290 -2.5983 1.3574 7 7 2.7718 -1.7956 -0.6725 8 6 3.4688 -2.8034 -1.4754 9 6 2.5393 -3.9573 -1.7506 10 8 1.4061 -3.9393 -1.3188 11 7 2.9670 -5.0087 -2.4772 12 6 4.3347 -5.0416 -3.0130 13 6 4.2735 -5.2972 -4.5179 14 6 3.4627 -6.5674 -4.7849 15 7 3.4284 -6.8304 -6.2256 16 6 4.4536 -7.5153 -6.8213 17 1 5.2873 -7.8620 -6.2288 18 6 4.4208 -7.7650 -8.1863 19 7 3.4044 -7.3429 -8.9083 20 14 5.8190 -8.7000 -8.9987 21 1 5.9315 -10.0498 -8.3898 22 1 5.5465 -8.8334 -10.4524 23 1 7.0909 -7.9597 -8.7999 24 6 2.0349 -6.3817 -4.2663 25 6 2.0727 -6.1412 -2.7533 26 6 2.0680 -0.7694 -1.1901 27 8 1.8988 -0.5156 -2.3634 28 1 -0.3633 0.4923 0.9021 29 1 -0.3634 0.5350 -0.8773 30 1 -0.3634 -1.0274 -0.0246 31 1 3.1562 1.4126 -0.0247 32 1 1.6931 1.9607 -0.8774 33 1 1.7331 1.9457 0.9021 34 1 1.9049 -0.5381 2.0948 35 1 4.3418 -3.1621 -0.9302 36 1 3.7868 -2.3600 -2.4190 37 1 4.8236 -4.0857 -2.8257 38 1 4.8964 -5.8422 -2.5318 39 1 5.2836 -5.4214 -4.9083 40 1 3.7951 -4.4501 -5.0095 41 1 3.9283 -7.4097 -4.2730 42 1 2.6793 -6.5192 -6.7577 43 1 3.3817 -7.5170 -9.8622 44 1 1.4515 -7.2778 -4.4777 45 1 1.5767 -5.5245 -4.7597 46 1 2.4465 -7.0331 -2.2506 47 1 1.0701 -5.9116 -2.3925 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000997256885.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:31:03 Heat of formation + Delta-G solvation = -86.368059 kcal Electronic energy + Delta-G solvation = -30282.993372 eV Core-core repulsion = 26080.057048 eV Total energy + Delta-G solvation = -4202.936324 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -43.70673 -41.24039 -39.82037 -38.86091 -37.71730 -36.36843 -36.18323 -33.92692 -32.66123 -32.21963 -31.15813 -29.72238 -28.45513 -26.59490 -25.37142 -24.49133 -24.27613 -23.06888 -21.94358 -21.39886 -20.23015 -19.13678 -19.09008 -18.76389 -17.69442 -17.42912 -17.03086 -16.78178 -16.70349 -16.51223 -16.22874 -15.50281 -15.49242 -15.37286 -15.35041 -15.04198 -14.89127 -14.51023 -14.21715 -13.95328 -13.67626 -13.39662 -13.33864 -13.26610 -13.16903 -13.14721 -12.80041 -12.65552 -12.58934 -12.23814 -12.20818 -12.02478 -11.99033 -11.74162 -11.69278 -11.33549 -11.27052 -10.92424 -10.73593 -10.51112 -9.78808 -9.00815 -7.92398 -5.21426 0.49162 0.93730 1.37079 1.48823 1.51425 1.57345 1.70327 2.03472 2.10159 2.57573 2.80010 3.28088 3.40939 3.48314 3.75518 3.76737 3.81811 3.86884 3.99482 4.06795 4.12280 4.20213 4.33253 4.38661 4.41426 4.59567 4.60673 4.65305 4.73137 4.74587 4.79555 4.82854 4.84531 4.98898 5.05275 5.09209 5.18835 5.26097 5.46571 5.53424 5.59377 5.76331 5.89064 6.20259 6.27810 6.29400 6.90712 7.02932 7.34879 8.10537 8.33442 9.31213 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.023423 B = 0.002356 C = 0.002308 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1195.135364 B =11883.537318 C =12126.197694 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.127 3.873 3 C -0.141 4.141 4 N -0.698 5.698 5 C 0.704 3.296 6 O -0.577 6.577 7 N -0.567 5.567 8 C 0.096 3.904 9 C 0.499 3.501 10 O -0.578 6.578 11 N -0.600 5.600 12 C 0.110 3.890 13 C -0.143 4.143 14 C 0.173 3.827 15 N -0.739 5.739 16 C -0.235 4.235 17 H 0.081 0.919 18 C -0.080 4.080 19 N -0.973 5.973 20 Si 0.972 3.028 21 H -0.278 1.278 22 H -0.301 1.301 23 H -0.276 1.276 24 C -0.127 4.127 25 C 0.124 3.876 26 C 0.523 3.477 27 O -0.490 6.490 28 H 0.114 0.886 29 H 0.088 0.912 30 H 0.046 0.954 31 H 0.065 0.935 32 H 0.088 0.912 33 H 0.111 0.889 34 H 0.453 0.547 35 H 0.150 0.850 36 H 0.143 0.857 37 H 0.110 0.890 38 H 0.095 0.905 39 H 0.072 0.928 40 H 0.045 0.955 41 H 0.053 0.947 42 H 0.369 0.631 43 H 0.249 0.751 44 H 0.072 0.928 45 H 0.047 0.953 46 H 0.088 0.912 47 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.342 18.890 23.933 30.519 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C 0.037 3.963 3 C -0.199 4.199 4 N -0.364 5.364 5 C 0.405 3.595 6 O -0.453 6.453 7 N -0.312 5.312 8 C -0.029 4.029 9 C 0.286 3.714 10 O -0.458 6.458 11 N -0.333 5.333 12 C -0.012 4.012 13 C -0.183 4.183 14 C 0.065 3.935 15 N -0.378 5.378 16 C -0.366 4.366 17 H 0.099 0.901 18 C -0.271 4.271 19 N -0.624 5.624 20 Si 0.801 3.199 21 H -0.204 1.204 22 H -0.227 1.227 23 H -0.202 1.202 24 C -0.166 4.166 25 C 0.001 3.999 26 C 0.312 3.688 27 O -0.360 6.360 28 H 0.132 0.868 29 H 0.107 0.893 30 H 0.065 0.935 31 H 0.085 0.915 32 H 0.107 0.893 33 H 0.130 0.870 34 H 0.301 0.699 35 H 0.168 0.832 36 H 0.160 0.840 37 H 0.128 0.872 38 H 0.113 0.887 39 H 0.091 0.909 40 H 0.063 0.937 41 H 0.071 0.929 42 H 0.200 0.800 43 H 0.058 0.942 44 H 0.091 0.909 45 H 0.065 0.935 46 H 0.106 0.894 47 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -1.517 18.437 23.798 30.143 hybrid contribution 0.131 -0.804 -1.098 1.368 sum -1.386 17.633 22.700 28.777 Atomic orbital electron populations 1.22041 0.88803 1.03251 1.06212 1.21632 0.98054 0.94860 0.81741 1.22053 1.01921 0.89677 1.06255 1.45568 1.53300 1.27552 1.09959 1.15930 0.79829 0.82493 0.81244 1.90989 1.50337 1.42714 1.61250 1.46035 1.49847 1.27254 1.08109 1.21710 0.95053 0.87001 0.99124 1.21171 0.88262 0.84034 0.77918 1.90662 1.21469 1.80273 1.53397 1.48192 1.15009 1.18928 1.51161 1.21951 0.81052 1.04848 0.93330 1.22396 1.01684 0.99146 0.95110 1.20421 0.93768 0.95305 0.84049 1.42667 1.24326 1.66747 1.04032 1.19607 0.99617 1.26034 0.91370 0.90106 1.25571 1.00659 1.03506 0.97409 1.69826 1.33143 1.53447 1.06022 0.85230 0.79118 0.78774 0.76759 1.20408 1.22713 1.20172 1.22061 0.97840 1.01538 0.95173 1.21541 0.95043 0.88651 0.94685 1.21554 0.76267 0.80300 0.90706 1.90801 1.56991 1.70195 1.18056 0.86767 0.89347 0.93473 0.91550 0.89272 0.87039 0.69890 0.83231 0.83959 0.87208 0.88700 0.90900 0.93652 0.92902 0.79953 0.94211 0.90892 0.93453 0.89385 0.90219 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.52 8.99 71.98 0.65 -0.88 16 2 C 0.13 1.61 1.37 2.98 0.00 1.61 16 3 C -0.14 -0.87 8.98 71.98 0.65 -0.22 16 4 N -0.70 -9.21 5.90 -439.82 -2.60 -11.80 16 5 C 0.70 15.78 8.62 179.44 1.55 17.32 16 6 O -0.58 -16.66 17.48 -3.85 -0.07 -16.73 16 7 N -0.57 -12.94 2.09 -777.20 -1.63 -14.56 16 8 C 0.10 2.07 4.53 85.64 0.39 2.46 16 9 C 0.50 14.34 7.77 87.66 0.68 15.02 16 10 O -0.58 -20.87 15.84 -3.02 -0.05 -20.91 16 11 N -0.60 -15.99 2.98 -819.66 -2.44 -18.43 16 12 C 0.11 2.44 6.31 86.22 0.54 2.98 16 13 C -0.14 -4.44 5.64 30.53 0.17 -4.26 16 14 C 0.17 6.41 2.73 45.02 0.12 6.53 16 15 N -0.74 -36.39 5.12 -322.82 -1.65 -38.04 16 16 C -0.23 -12.61 9.93 84.03 0.83 -11.77 16 17 H 0.08 4.08 7.83 -2.91 -0.02 4.06 16 18 C -0.08 -4.52 5.50 84.86 0.47 -4.05 16 19 N -0.97 -59.76 13.06 21.65 0.28 -59.48 16 20 Si 0.97 45.53 29.55 68.60 2.03 47.56 16 21 H -0.28 -12.51 7.11 99.48 0.71 -11.81 16 22 H -0.30 -14.41 7.11 99.48 0.71 -13.70 16 23 H -0.28 -12.31 7.11 99.48 0.71 -11.60 16 24 C -0.13 -4.23 5.55 30.69 0.17 -4.06 16 25 C 0.12 3.50 6.44 86.38 0.56 4.06 16 26 C 0.52 11.46 6.99 87.94 0.61 12.07 16 27 O -0.49 -13.59 17.75 -2.89 -0.05 -13.64 16 28 H 0.11 0.41 8.14 -2.38 -0.02 0.39 16 29 H 0.09 0.90 8.14 -2.39 -0.02 0.88 16 30 H 0.05 0.76 8.14 -2.39 -0.02 0.74 16 31 H 0.07 0.47 8.14 -2.39 -0.02 0.45 16 32 H 0.09 0.56 8.14 -2.38 -0.02 0.54 16 33 H 0.11 0.04 8.14 -2.38 -0.02 0.02 16 34 H 0.45 3.16 8.96 -92.71 -0.83 2.33 16 35 H 0.15 2.51 7.67 -2.39 -0.02 2.49 16 36 H 0.14 2.58 7.54 -2.39 -0.02 2.56 16 37 H 0.11 1.71 5.93 -2.39 -0.01 1.70 16 38 H 0.09 1.78 8.14 -2.39 -0.02 1.76 16 39 H 0.07 2.37 8.14 -2.39 -0.02 2.35 16 40 H 0.04 1.55 8.14 -2.38 -0.02 1.53 16 41 H 0.05 1.93 8.08 -2.39 -0.02 1.91 16 42 H 0.37 20.09 7.80 -92.70 -0.72 19.37 16 43 H 0.25 14.95 8.31 -92.71 -0.77 14.18 16 44 H 0.07 2.47 8.14 -2.39 -0.02 2.45 16 45 H 0.05 1.72 8.14 -2.39 -0.02 1.70 16 46 H 0.09 2.18 8.14 -2.39 -0.02 2.16 16 47 H 0.08 2.43 7.00 -2.39 -0.02 2.42 16 Total: -1.00 -81.01 387.29 0.68 -80.33 By element: Atomic # 1 Polarization: 29.44 SS G_CDS: -0.55 Total: 28.89 kcal Atomic # 6 Polarization: 29.42 SS G_CDS: 7.40 Total: 36.81 kcal Atomic # 7 Polarization: -134.28 SS G_CDS: -8.03 Total: -142.31 kcal Atomic # 8 Polarization: -51.12 SS G_CDS: -0.17 Total: -51.29 kcal Atomic # 14 Polarization: 45.53 SS G_CDS: 2.03 Total: 47.56 kcal Total: -81.01 0.68 -80.33 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000997256885.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.038 kcal (2) G-P(sol) polarization free energy of solvation -81.007 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.045 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.677 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.330 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.368 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds