Wall clock time and date at job start Tue Mar 31 2020 21:31:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 C 1.34777 * 120.00264 * 2 1 4 4 O 1.21283 * 119.99750 * 180.02562 * 3 2 1 5 5 C 1.50702 * 119.99928 * 0.28128 * 3 2 1 6 6 N 1.46491 * 109.46957 * 179.72354 * 5 3 2 7 7 C 1.34529 * 126.69244 * 90.02367 * 6 5 3 8 8 O 1.21537 * 123.77521 * 359.96143 * 7 6 5 9 9 N 1.33798 * 112.45720 * 179.97438 * 7 6 5 10 10 C 1.34769 * 111.64470 * 0.02562 * 9 7 6 11 11 O 1.21235 * 127.15609 * 180.02562 * 10 9 7 12 12 C 1.47317 * 126.69085 * 269.70522 * 6 5 3 13 13 C 1.52995 * 110.60020 * 298.56943 * 12 6 5 14 14 C 1.53002 * 110.59481 * 61.51126 * 12 6 5 15 15 C 1.46499 * 119.99537 * 180.02562 * 2 1 3 16 16 C 1.53776 * 113.61753 * 37.49344 * 15 2 1 17 17 C 1.53784 * 87.08152 * 220.01711 * 16 15 2 18 18 N 1.46500 * 113.68530 * 139.99209 * 17 16 15 19 19 C 1.36934 * 120.00227 * 107.47031 * 18 17 16 20 20 H 1.08005 * 119.99990 * 359.97438 * 19 18 17 21 21 C 1.38805 * 120.00555 * 179.97438 * 19 18 17 22 22 N 1.31621 * 120.00037 * 359.97438 * 21 19 18 23 23 Si 1.86806 * 120.00322 * 179.97438 * 21 19 18 24 24 H 1.48491 * 109.46907 * 0.02562 * 23 21 19 25 25 H 1.48505 * 109.46874 * 120.00150 * 23 21 19 26 26 H 1.48500 * 109.47341 * 240.00049 * 23 21 19 27 27 C 1.53775 * 87.07873 * 25.43531 * 17 16 15 28 28 H 1.08998 * 109.46921 * 89.99095 * 1 2 3 29 29 H 1.08994 * 109.46996 * 209.99677 * 1 2 3 30 30 H 1.09001 * 109.46578 * 329.99540 * 1 2 3 31 31 H 1.09004 * 109.46965 * 299.72211 * 5 3 2 32 32 H 1.08994 * 109.46990 * 59.72065 * 5 3 2 33 33 H 0.97003 * 124.17381 * 180.02562 * 9 7 6 34 34 H 1.09000 * 109.47089 * 59.99619 * 13 12 6 35 35 H 1.08999 * 109.47081 * 179.97438 * 13 12 6 36 36 H 1.09003 * 109.47008 * 299.99696 * 13 12 6 37 37 H 1.09003 * 109.47134 * 60.00605 * 14 12 6 38 38 H 1.09001 * 109.47295 * 179.97438 * 14 12 6 39 39 H 1.08999 * 109.47317 * 300.00026 * 14 12 6 40 40 H 1.09009 * 112.84819 * 168.80039 * 15 2 1 41 41 H 1.08999 * 113.61789 * 334.57056 * 16 15 2 42 42 H 1.09002 * 113.61770 * 105.47187 * 16 15 2 43 43 H 1.08995 * 113.61701 * 270.88084 * 17 16 15 44 44 H 0.97001 * 120.00091 * 287.46302 * 18 17 16 45 45 H 0.96996 * 120.00330 * 179.97438 * 22 21 19 46 46 H 1.09003 * 113.61080 * 220.01726 * 27 17 16 47 47 H 1.08999 * 113.61835 * 89.11940 * 27 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1390 1.1672 0.0000 4 8 3.3518 1.1671 -0.0005 5 6 1.3855 2.4723 0.0064 6 7 2.3376 3.5857 0.0118 7 6 2.8595 4.2021 -1.0640 8 8 2.5955 3.8988 -2.2109 9 7 3.7021 5.1865 -0.7303 10 6 3.8157 5.3116 0.6068 11 8 4.4993 6.1091 1.2121 12 6 2.9051 4.2529 1.1963 13 6 1.7980 4.8960 2.0339 14 6 3.7115 3.2615 2.0376 15 6 2.1974 -1.2688 -0.0006 16 6 1.5373 -2.3608 -0.8586 17 6 1.9129 -3.3527 0.2550 18 7 0.8727 -4.3459 0.5338 19 6 1.0472 -5.6475 0.1458 20 1 1.9515 -5.9418 -0.3662 21 6 0.0620 -6.5888 0.4105 22 7 -1.0398 -6.2304 1.0349 23 14 0.2998 -8.3642 -0.1196 24 1 1.6134 -8.5067 -0.7970 25 1 0.2607 -9.2466 1.0743 26 1 -0.7855 -8.7507 -1.0566 27 6 1.8953 -2.1550 1.2193 28 1 -0.3633 0.0002 -1.0277 29 1 -0.3633 -0.8900 0.5138 30 1 -0.3632 0.8900 0.5139 31 1 0.7588 2.5344 -0.8833 32 1 0.7590 2.5257 0.8966 33 1 4.1730 5.7415 -1.3715 34 1 1.0983 4.1277 2.3626 35 1 2.2375 5.3832 2.9043 36 1 1.2696 5.6351 1.4316 37 1 4.5255 2.8540 1.4380 38 1 4.1228 3.7736 2.9075 39 1 3.0614 2.4509 2.3665 40 1 3.2625 -1.1426 -0.1956 41 1 0.4623 -2.2291 -0.9818 42 1 2.0526 -2.5468 -1.8010 43 1 2.8999 -3.7974 0.1289 44 1 0.0604 -4.0816 0.9935 45 1 -1.7285 -6.8880 1.2195 46 1 2.6997 -2.1747 1.9546 47 1 0.9183 -1.9670 1.6644 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000999647966.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:31:59 Heat of formation + Delta-G solvation = -30.255949 kcal Electronic energy + Delta-G solvation = -30134.615914 eV Core-core repulsion = 25934.112794 eV Total energy + Delta-G solvation = -4200.503120 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -42.86839 -40.22710 -39.01661 -38.13600 -36.90974 -35.17561 -34.89539 -33.24535 -32.55176 -30.11137 -28.53375 -27.96429 -27.09015 -25.19609 -24.80406 -24.46872 -22.95141 -21.55133 -21.16895 -19.51469 -18.87151 -18.45846 -17.57674 -17.15263 -16.91296 -16.74126 -16.31516 -16.18720 -15.67473 -15.36847 -14.86196 -14.70793 -14.49941 -14.37838 -13.89859 -13.58084 -13.46442 -13.07570 -13.06134 -12.99061 -12.83266 -12.66181 -12.37694 -12.26389 -12.06968 -11.94013 -11.84908 -11.29529 -11.16940 -10.94950 -10.71889 -10.63803 -10.53857 -10.51283 -10.32310 -10.20782 -10.00571 -9.67798 -9.21907 -8.94795 -8.53665 -7.03911 -5.85112 -3.13973 1.22708 1.74698 2.45627 2.54074 2.65230 3.05814 3.38983 3.45605 3.47214 3.54151 4.06734 4.22626 4.35125 4.46403 4.54258 4.78279 4.96262 4.99455 5.01245 5.05561 5.12060 5.15067 5.29764 5.31980 5.37979 5.40911 5.45988 5.48071 5.62626 5.66411 5.80515 5.83494 5.89336 5.90736 6.09008 6.22256 6.27464 6.35630 6.52066 6.64688 6.72247 6.95514 6.98367 7.39154 7.65215 7.75226 8.07084 8.33416 9.45088 10.01015 10.35615 11.37286 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.029497 B = 0.002150 C = 0.002127 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 949.033101 B =13021.266193 C =13161.596867 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.070 3.930 2 N -0.595 5.595 3 C 0.491 3.509 4 O -0.531 6.531 5 C 0.133 3.867 6 N -0.599 5.599 7 C 0.709 3.291 8 O -0.538 6.538 9 N -0.679 5.679 10 C 0.537 3.463 11 O -0.467 6.467 12 C 0.119 3.881 13 C -0.146 4.146 14 C -0.140 4.140 15 C 0.117 3.883 16 C -0.174 4.174 17 C 0.169 3.831 18 N -0.709 5.709 19 C -0.243 4.243 20 H 0.072 0.928 21 C -0.013 4.013 22 N -0.933 5.933 23 Si 0.907 3.093 24 H -0.280 1.280 25 H -0.291 1.291 26 H -0.291 1.291 27 C -0.161 4.161 28 H 0.061 0.939 29 H 0.085 0.915 30 H 0.067 0.933 31 H 0.120 0.880 32 H 0.117 0.883 33 H 0.431 0.569 34 H 0.080 0.920 35 H 0.086 0.914 36 H 0.067 0.933 37 H 0.077 0.923 38 H 0.078 0.922 39 H 0.076 0.924 40 H 0.113 0.887 41 H 0.083 0.917 42 H 0.060 0.940 43 H 0.079 0.921 44 H 0.385 0.615 45 H 0.255 0.745 46 H 0.063 0.937 47 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.277 25.022 1.907 25.307 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 N -0.328 5.328 3 C 0.277 3.723 4 O -0.407 6.407 5 C 0.007 3.993 6 N -0.337 5.337 7 C 0.410 3.590 8 O -0.411 6.411 9 N -0.349 5.349 10 C 0.323 3.677 11 O -0.336 6.336 12 C 0.031 3.969 13 C -0.204 4.204 14 C -0.198 4.198 15 C 0.014 3.986 16 C -0.217 4.217 17 C 0.057 3.943 18 N -0.347 5.347 19 C -0.375 4.375 20 H 0.090 0.910 21 C -0.209 4.209 22 N -0.581 5.581 23 Si 0.738 3.262 24 H -0.205 1.205 25 H -0.218 1.218 26 H -0.218 1.218 27 C -0.202 4.202 28 H 0.080 0.920 29 H 0.104 0.896 30 H 0.086 0.914 31 H 0.138 0.862 32 H 0.135 0.865 33 H 0.274 0.726 34 H 0.098 0.902 35 H 0.105 0.895 36 H 0.086 0.914 37 H 0.096 0.904 38 H 0.097 0.903 39 H 0.095 0.905 40 H 0.131 0.869 41 H 0.102 0.898 42 H 0.079 0.921 43 H 0.097 0.903 44 H 0.219 0.781 45 H 0.065 0.935 46 H 0.082 0.918 47 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 4.053 24.918 1.635 25.298 hybrid contribution -0.133 -0.732 -0.554 0.928 sum 3.919 24.186 1.081 24.525 Atomic orbital electron populations 1.21872 0.79422 1.03565 1.02442 1.47880 1.06990 1.05787 1.72114 1.20989 0.88654 0.85625 0.77026 1.90692 1.13602 1.87076 1.49363 1.21221 0.89661 0.82268 1.06109 1.47192 1.47084 1.34213 1.05248 1.15746 0.78823 0.79259 0.85203 1.91036 1.63875 1.67695 1.18516 1.44324 1.44679 1.35407 1.10453 1.20729 0.81144 0.83594 0.82252 1.90828 1.39435 1.37341 1.65975 1.21579 0.94606 0.92494 0.88237 1.21991 0.96979 1.01462 0.99941 1.21965 1.00698 0.97798 0.99374 1.22620 0.97227 0.80103 0.98625 1.24326 1.01069 0.96555 0.99700 1.21335 0.93773 0.87295 0.91946 1.42351 1.18543 1.05237 1.68597 1.19352 1.02143 0.85184 1.30772 0.90956 1.24761 0.96667 0.98311 1.01113 1.69659 1.08331 1.33603 1.46480 0.86114 0.77322 0.84987 0.77751 1.20485 1.21827 1.21822 1.23920 1.01778 0.97284 0.97191 0.92028 0.89637 0.91421 0.86214 0.86542 0.72616 0.90160 0.89519 0.91363 0.90416 0.90287 0.90541 0.86906 0.89807 0.92140 0.90307 0.78129 0.93485 0.91792 0.90050 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.62 8.85 59.85 0.53 1.15 16 2 N -0.60 -7.00 3.08 -173.00 -0.53 -7.53 16 3 C 0.49 5.86 7.34 -10.98 -0.08 5.78 16 4 O -0.53 -8.15 14.22 5.55 0.08 -8.07 16 5 C 0.13 1.07 4.88 -5.20 -0.03 1.05 16 6 N -0.60 -5.52 1.99 -166.45 -0.33 -5.85 16 7 C 0.71 7.96 8.68 -88.01 -0.76 7.20 16 8 O -0.54 -7.90 17.71 5.33 0.09 -7.81 16 9 N -0.68 -6.04 5.70 -15.79 -0.09 -6.13 16 10 C 0.54 4.92 7.48 -10.56 -0.08 4.84 16 11 O -0.47 -5.20 18.02 5.60 0.10 -5.10 16 12 C 0.12 0.93 1.14 -132.09 -0.15 0.78 16 13 C -0.15 -0.71 8.80 37.16 0.33 -0.38 16 14 C -0.14 -1.16 7.58 37.16 0.28 -0.88 16 15 C 0.12 1.67 4.21 -67.12 -0.28 1.39 16 16 C -0.17 -2.82 7.31 -25.92 -0.19 -3.01 16 17 C 0.17 3.16 4.48 -67.12 -0.30 2.85 16 18 N -0.71 -16.82 5.40 -52.64 -0.28 -17.10 16 19 C -0.24 -6.52 9.97 -15.06 -0.15 -6.67 16 20 H 0.07 1.90 7.83 -52.48 -0.41 1.49 16 21 C -0.01 -0.35 5.50 -17.43 -0.10 -0.44 16 22 N -0.93 -27.16 13.06 55.49 0.72 -26.44 16 23 Si 0.91 21.85 29.55 -169.99 -5.02 16.83 16 24 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 25 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 26 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 27 C -0.16 -2.47 7.37 -25.92 -0.19 -2.66 16 28 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 29 H 0.08 0.87 6.34 -51.93 -0.33 0.54 16 30 H 0.07 0.36 6.43 -51.93 -0.33 0.03 16 31 H 0.12 0.89 8.00 -51.93 -0.42 0.48 16 32 H 0.12 0.52 6.61 -51.93 -0.34 0.18 16 33 H 0.43 2.93 8.96 -40.82 -0.37 2.57 16 34 H 0.08 0.28 7.43 -51.93 -0.39 -0.11 16 35 H 0.09 0.38 8.14 -51.93 -0.42 -0.05 16 36 H 0.07 0.32 8.14 -51.93 -0.42 -0.11 16 37 H 0.08 0.84 7.55 -51.93 -0.39 0.45 16 38 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 39 H 0.08 0.62 7.90 -51.93 -0.41 0.21 16 40 H 0.11 1.74 7.23 -51.92 -0.38 1.37 16 41 H 0.08 1.37 6.72 -51.93 -0.35 1.03 16 42 H 0.06 0.99 8.14 -51.93 -0.42 0.56 16 43 H 0.08 1.49 8.10 -51.93 -0.42 1.07 16 44 H 0.38 9.57 7.92 -40.82 -0.32 9.25 16 45 H 0.26 7.20 8.31 -40.82 -0.34 6.86 16 46 H 0.06 0.96 8.14 -51.93 -0.42 0.53 16 47 H 0.08 1.23 6.90 -51.93 -0.36 0.87 16 LS Contribution 384.72 15.07 5.80 5.80 Total: -1.00 -34.91 384.72 -7.52 -42.44 By element: Atomic # 1 Polarization: 14.86 SS G_CDS: -6.88 Total: 7.97 kcal Atomic # 6 Polarization: 12.16 SS G_CDS: -1.17 Total: 10.99 kcal Atomic # 7 Polarization: -62.53 SS G_CDS: -0.51 Total: -63.05 kcal Atomic # 8 Polarization: -21.25 SS G_CDS: 0.27 Total: -20.98 kcal Atomic # 14 Polarization: 21.85 SS G_CDS: -5.02 Total: 16.83 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -34.91 -7.52 -42.44 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000999647966.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.180 kcal (2) G-P(sol) polarization free energy of solvation -34.914 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.734 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.522 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.436 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.256 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds