Wall clock time and date at job start Tue Mar 31 2020 21:31:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 C 1.34777 * 120.00264 * 2 1 4 4 O 1.21283 * 119.99750 * 180.02562 * 3 2 1 5 5 C 1.50702 * 119.99928 * 0.28128 * 3 2 1 6 6 N 1.46491 * 109.46957 * 179.72354 * 5 3 2 7 7 C 1.34529 * 126.69244 * 90.02367 * 6 5 3 8 8 O 1.21537 * 123.77521 * 359.96143 * 7 6 5 9 9 N 1.33798 * 112.45720 * 179.97438 * 7 6 5 10 10 C 1.34769 * 111.64470 * 0.02562 * 9 7 6 11 11 O 1.21235 * 127.15609 * 180.02562 * 10 9 7 12 12 C 1.47317 * 126.69085 * 269.70522 * 6 5 3 13 13 C 1.52995 * 110.60020 * 298.56943 * 12 6 5 14 14 C 1.53002 * 110.59481 * 61.51126 * 12 6 5 15 15 C 1.46499 * 119.99537 * 180.02562 * 2 1 3 16 16 C 1.53776 * 113.61753 * 37.49344 * 15 2 1 17 17 C 1.53784 * 87.08152 * 220.01711 * 16 15 2 18 18 N 1.46500 * 113.68530 * 139.99209 * 17 16 15 19 19 C 1.36934 * 120.00227 * 107.47031 * 18 17 16 20 20 H 1.08005 * 119.99990 * 359.97438 * 19 18 17 21 21 C 1.38805 * 120.00555 * 179.97438 * 19 18 17 22 22 N 1.31621 * 120.00037 * 359.97438 * 21 19 18 23 23 Si 1.86806 * 120.00322 * 179.97438 * 21 19 18 24 24 H 1.48491 * 109.46907 * 0.02562 * 23 21 19 25 25 H 1.48505 * 109.46874 * 120.00150 * 23 21 19 26 26 H 1.48500 * 109.47341 * 240.00049 * 23 21 19 27 27 C 1.53775 * 87.07873 * 25.43531 * 17 16 15 28 28 H 1.08998 * 109.46921 * 89.99095 * 1 2 3 29 29 H 1.08994 * 109.46996 * 209.99677 * 1 2 3 30 30 H 1.09001 * 109.46578 * 329.99540 * 1 2 3 31 31 H 1.09004 * 109.46965 * 299.72211 * 5 3 2 32 32 H 1.08994 * 109.46990 * 59.72065 * 5 3 2 33 33 H 0.97003 * 124.17381 * 180.02562 * 9 7 6 34 34 H 1.09000 * 109.47089 * 59.99619 * 13 12 6 35 35 H 1.08999 * 109.47081 * 179.97438 * 13 12 6 36 36 H 1.09003 * 109.47008 * 299.99696 * 13 12 6 37 37 H 1.09003 * 109.47134 * 60.00605 * 14 12 6 38 38 H 1.09001 * 109.47295 * 179.97438 * 14 12 6 39 39 H 1.08999 * 109.47317 * 300.00026 * 14 12 6 40 40 H 1.09009 * 112.84819 * 168.80039 * 15 2 1 41 41 H 1.08999 * 113.61789 * 334.57056 * 16 15 2 42 42 H 1.09002 * 113.61770 * 105.47187 * 16 15 2 43 43 H 1.08995 * 113.61701 * 270.88084 * 17 16 15 44 44 H 0.97001 * 120.00091 * 287.46302 * 18 17 16 45 45 H 0.96996 * 120.00330 * 179.97438 * 22 21 19 46 46 H 1.09003 * 113.61080 * 220.01726 * 27 17 16 47 47 H 1.08999 * 113.61835 * 89.11940 * 27 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1390 1.1672 0.0000 4 8 3.3518 1.1671 -0.0005 5 6 1.3855 2.4723 0.0064 6 7 2.3376 3.5857 0.0118 7 6 2.8595 4.2021 -1.0640 8 8 2.5955 3.8988 -2.2109 9 7 3.7021 5.1865 -0.7303 10 6 3.8157 5.3116 0.6068 11 8 4.4993 6.1091 1.2121 12 6 2.9051 4.2529 1.1963 13 6 1.7980 4.8960 2.0339 14 6 3.7115 3.2615 2.0376 15 6 2.1974 -1.2688 -0.0006 16 6 1.5373 -2.3608 -0.8586 17 6 1.9129 -3.3527 0.2550 18 7 0.8727 -4.3459 0.5338 19 6 1.0472 -5.6475 0.1458 20 1 1.9515 -5.9418 -0.3662 21 6 0.0620 -6.5888 0.4105 22 7 -1.0398 -6.2304 1.0349 23 14 0.2998 -8.3642 -0.1196 24 1 1.6134 -8.5067 -0.7970 25 1 0.2607 -9.2466 1.0743 26 1 -0.7855 -8.7507 -1.0566 27 6 1.8953 -2.1550 1.2193 28 1 -0.3633 0.0002 -1.0277 29 1 -0.3633 -0.8900 0.5138 30 1 -0.3632 0.8900 0.5139 31 1 0.7588 2.5344 -0.8833 32 1 0.7590 2.5257 0.8966 33 1 4.1730 5.7415 -1.3715 34 1 1.0983 4.1277 2.3626 35 1 2.2375 5.3832 2.9043 36 1 1.2696 5.6351 1.4316 37 1 4.5255 2.8540 1.4380 38 1 4.1228 3.7736 2.9075 39 1 3.0614 2.4509 2.3665 40 1 3.2625 -1.1426 -0.1956 41 1 0.4623 -2.2291 -0.9818 42 1 2.0526 -2.5468 -1.8010 43 1 2.8999 -3.7974 0.1289 44 1 0.0604 -4.0816 0.9935 45 1 -1.7285 -6.8880 1.2195 46 1 2.6997 -2.1747 1.9546 47 1 0.9183 -1.9670 1.6644 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000999647966.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:31:58 Heat of formation + Delta-G solvation = -56.089936 kcal Electronic energy + Delta-G solvation = -30135.736160 eV Core-core repulsion = 25934.112794 eV Total energy + Delta-G solvation = -4201.623366 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -43.61795 -41.27172 -39.89247 -39.32494 -37.74669 -36.17690 -35.93935 -34.87776 -33.29088 -31.92960 -29.35127 -28.46355 -27.93956 -26.58057 -26.20180 -25.45246 -24.27028 -22.56470 -21.87602 -20.69968 -20.04355 -19.20961 -19.02944 -18.48077 -17.78286 -17.56739 -17.24751 -17.04137 -16.66202 -16.39197 -16.07651 -15.99502 -15.50853 -15.41424 -15.00558 -14.92579 -14.37867 -14.23677 -14.05653 -13.68378 -13.60795 -13.40229 -13.24130 -13.16145 -13.12421 -13.03790 -12.87222 -12.77480 -12.57299 -12.21390 -12.11438 -12.00869 -11.93752 -11.67007 -11.54902 -11.40963 -11.29242 -11.13721 -10.87499 -10.05510 -9.55581 -8.97358 -7.94592 -5.21989 0.46304 1.03392 1.48323 1.49351 1.57247 1.58625 1.78797 1.87483 2.17745 2.57490 2.85308 3.37510 3.46055 3.49420 3.75714 3.80086 3.83240 3.87090 3.97008 4.21371 4.24832 4.31032 4.39515 4.45522 4.57528 4.63955 4.71219 4.74748 4.76507 4.84213 4.87206 4.91325 4.96986 5.04239 5.07077 5.11477 5.16363 5.20005 5.24525 5.44926 5.53360 5.68563 5.88025 6.24166 6.28289 6.46144 6.94781 7.15641 7.35305 8.10333 8.34481 9.28482 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.029497 B = 0.002150 C = 0.002127 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 949.033101 B =13021.266193 C =13161.596867 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.063 3.937 2 N -0.595 5.595 3 C 0.487 3.513 4 O -0.571 6.571 5 C 0.133 3.867 6 N -0.594 5.594 7 C 0.705 3.295 8 O -0.578 6.578 9 N -0.673 5.673 10 C 0.538 3.462 11 O -0.488 6.488 12 C 0.122 3.878 13 C -0.141 4.141 14 C -0.135 4.135 15 C 0.135 3.865 16 C -0.163 4.163 17 C 0.150 3.850 18 N -0.721 5.721 19 C -0.242 4.242 20 H 0.073 0.927 21 C -0.072 4.072 22 N -0.966 5.966 23 Si 0.968 3.032 24 H -0.269 1.269 25 H -0.294 1.294 26 H -0.294 1.294 27 C -0.144 4.144 28 H 0.065 0.935 29 H 0.072 0.928 30 H 0.112 0.888 31 H 0.133 0.867 32 H 0.165 0.835 33 H 0.438 0.562 34 H 0.103 0.897 35 H 0.094 0.906 36 H 0.073 0.927 37 H 0.046 0.954 38 H 0.093 0.907 39 H 0.081 0.919 40 H 0.101 0.899 41 H 0.084 0.916 42 H 0.055 0.945 43 H 0.072 0.928 44 H 0.377 0.623 45 H 0.251 0.749 46 H 0.068 0.932 47 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.449 26.457 2.677 26.705 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 N -0.327 5.327 3 C 0.275 3.725 4 O -0.450 6.450 5 C 0.009 3.991 6 N -0.331 5.331 7 C 0.406 3.594 8 O -0.455 6.455 9 N -0.343 5.343 10 C 0.325 3.675 11 O -0.359 6.359 12 C 0.034 3.966 13 C -0.199 4.199 14 C -0.193 4.193 15 C 0.030 3.970 16 C -0.205 4.205 17 C 0.040 3.960 18 N -0.359 5.359 19 C -0.374 4.374 20 H 0.091 0.909 21 C -0.265 4.265 22 N -0.616 5.616 23 Si 0.797 3.203 24 H -0.194 1.194 25 H -0.221 1.221 26 H -0.221 1.221 27 C -0.184 4.184 28 H 0.084 0.916 29 H 0.090 0.910 30 H 0.130 0.870 31 H 0.150 0.850 32 H 0.182 0.818 33 H 0.281 0.719 34 H 0.122 0.878 35 H 0.113 0.887 36 H 0.092 0.908 37 H 0.065 0.935 38 H 0.111 0.889 39 H 0.100 0.900 40 H 0.119 0.881 41 H 0.102 0.898 42 H 0.074 0.926 43 H 0.090 0.910 44 H 0.209 0.791 45 H 0.060 0.940 46 H 0.087 0.913 47 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 3.249 26.399 2.409 26.707 hybrid contribution 0.218 -1.117 -0.812 1.398 sum 3.467 25.282 1.597 25.569 Atomic orbital electron populations 1.22123 0.77320 1.05127 1.03286 1.47893 1.08176 1.04781 1.71860 1.21707 0.88399 0.86654 0.75780 1.90690 1.15553 1.87683 1.51084 1.21500 0.89131 0.79519 1.08980 1.47337 1.46719 1.33971 1.05092 1.15944 0.78849 0.79524 0.85115 1.91005 1.65314 1.68985 1.20149 1.44279 1.44183 1.35005 1.10841 1.20992 0.80866 0.83566 0.82096 1.90820 1.40383 1.38416 1.66244 1.21752 0.95259 0.91802 0.87831 1.22047 0.96156 1.02142 0.99572 1.21908 0.99922 0.98082 0.99356 1.22160 0.96722 0.81228 0.96904 1.24103 1.01183 0.96373 0.98811 1.21627 0.92278 0.87518 0.94620 1.42464 1.19376 1.05222 1.68838 1.19684 1.01716 0.86624 1.29392 0.90880 1.25480 0.96832 1.01930 1.02241 1.69787 1.09107 1.34433 1.48310 0.85156 0.77398 0.80654 0.77054 1.19386 1.22118 1.22100 1.23723 1.02316 0.95280 0.97048 0.91597 0.90971 0.86999 0.84951 0.81813 0.71853 0.87808 0.88733 0.90813 0.93489 0.88854 0.89993 0.88102 0.89779 0.92591 0.91017 0.79063 0.93993 0.91342 0.89395 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.92 8.85 127.77 1.13 2.05 16 2 N -0.60 -12.68 3.08 -819.64 -2.53 -15.20 16 3 C 0.49 10.54 7.34 87.66 0.64 11.18 16 4 O -0.57 -17.06 14.22 -3.04 -0.04 -17.11 16 5 C 0.13 1.68 4.88 85.64 0.42 2.10 16 6 N -0.59 -9.56 1.99 -798.96 -1.59 -11.15 16 7 C 0.70 15.12 8.68 179.44 1.56 16.67 16 8 O -0.58 -16.74 17.71 -3.83 -0.07 -16.81 16 9 N -0.67 -11.54 5.70 -441.11 -2.52 -14.05 16 10 C 0.54 9.20 7.48 87.94 0.66 9.85 16 11 O -0.49 -10.40 18.02 -2.89 -0.05 -10.46 16 12 C 0.12 1.60 1.14 2.98 0.00 1.60 16 13 C -0.14 -0.83 8.80 71.98 0.63 -0.20 16 14 C -0.13 -1.98 7.58 71.98 0.55 -1.44 16 15 C 0.13 3.70 4.21 45.52 0.19 3.89 16 16 C -0.16 -5.19 7.31 31.12 0.23 -4.96 16 17 C 0.15 5.58 4.48 45.52 0.20 5.78 16 18 N -0.72 -34.36 5.40 -320.46 -1.73 -36.09 16 19 C -0.24 -13.03 9.97 84.03 0.84 -12.19 16 20 H 0.07 3.83 7.83 -2.91 -0.02 3.81 16 21 C -0.07 -4.03 5.50 84.86 0.47 -3.57 16 22 N -0.97 -56.86 13.06 21.65 0.28 -56.57 16 23 Si 0.97 45.18 29.55 68.60 2.03 47.21 16 24 H -0.27 -11.94 7.11 99.48 0.71 -11.23 16 25 H -0.29 -13.74 7.11 99.48 0.71 -13.03 16 26 H -0.29 -13.72 7.11 99.48 0.71 -13.02 16 27 C -0.14 -4.25 7.37 31.12 0.23 -4.02 16 28 H 0.07 0.94 8.14 -2.39 -0.02 0.92 16 29 H 0.07 1.30 6.34 -2.39 -0.02 1.28 16 30 H 0.11 0.63 6.43 -2.39 -0.02 0.61 16 31 H 0.13 1.47 8.00 -2.38 -0.02 1.45 16 32 H 0.16 0.51 6.61 -2.39 -0.02 0.49 16 33 H 0.44 5.89 8.96 -92.71 -0.83 5.06 16 34 H 0.10 0.16 7.43 -2.39 -0.02 0.14 16 35 H 0.09 0.48 8.14 -2.39 -0.02 0.46 16 36 H 0.07 0.40 8.14 -2.39 -0.02 0.38 16 37 H 0.05 1.00 7.55 -2.39 -0.02 0.98 16 38 H 0.09 1.09 8.14 -2.39 -0.02 1.07 16 39 H 0.08 1.12 7.90 -2.39 -0.02 1.10 16 40 H 0.10 3.08 7.23 -2.38 -0.02 3.07 16 41 H 0.08 2.69 6.72 -2.39 -0.02 2.68 16 42 H 0.06 1.81 8.14 -2.39 -0.02 1.79 16 43 H 0.07 2.74 8.10 -2.39 -0.02 2.72 16 44 H 0.38 18.92 7.92 -92.71 -0.73 18.18 16 45 H 0.25 14.36 8.31 -92.71 -0.77 13.59 16 46 H 0.07 1.97 8.14 -2.39 -0.02 1.95 16 47 H 0.09 2.52 6.90 -2.39 -0.02 2.50 16 Total: -1.00 -77.52 384.72 0.98 -76.54 By element: Atomic # 1 Polarization: 27.48 SS G_CDS: -0.54 Total: 26.94 kcal Atomic # 6 Polarization: 19.01 SS G_CDS: 7.75 Total: 26.76 kcal Atomic # 7 Polarization: -124.99 SS G_CDS: -8.08 Total: -133.07 kcal Atomic # 8 Polarization: -44.21 SS G_CDS: -0.16 Total: -44.37 kcal Atomic # 14 Polarization: 45.18 SS G_CDS: 2.03 Total: 47.21 kcal Total: -77.52 0.98 -76.54 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000999647966.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.451 kcal (2) G-P(sol) polarization free energy of solvation -77.523 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.073 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.983 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.541 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.090 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds