Wall clock time and date at job start Tue Mar 31 2020 21:31:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53003 * 110.53404 * 2 1 4 4 N 1.47309 * 110.60043 * 122.83465 * 2 1 3 5 5 C 1.34528 * 106.62314 * 118.52864 * 4 2 1 6 6 O 1.21538 * 123.77405 * 179.97438 * 5 4 2 7 7 N 1.33791 * 112.45521 * 359.97438 * 5 4 2 8 8 C 1.46504 * 124.18023 * 179.97438 * 7 5 4 9 9 C 1.50702 * 109.46569 * 90.02720 * 8 7 5 10 10 O 1.21283 * 120.00399 * 359.97438 * 9 8 7 11 11 N 1.34777 * 119.99752 * 180.02562 * 9 8 7 12 12 C 1.46925 * 120.63077 * 359.97438 * 11 9 8 13 13 C 1.53196 * 108.78048 * 233.59333 * 12 11 9 14 14 C 1.53043 * 109.30804 * 305.36784 * 13 12 11 15 15 C 1.53034 * 109.54019 * 61.36529 * 14 13 12 16 16 H 1.09002 * 109.50433 * 58.61654 * 15 14 13 17 17 N 1.46504 * 109.49809 * 178.68302 * 15 14 13 18 18 C 1.36935 * 119.99898 * 204.99765 * 17 15 14 19 19 H 1.07999 * 120.00283 * 359.97438 * 18 17 15 20 20 C 1.38812 * 120.00177 * 179.97438 * 18 17 15 21 21 N 1.31621 * 120.00446 * 179.97438 * 20 18 17 22 22 Si 1.86804 * 119.99698 * 0.02562 * 20 18 17 23 23 H 1.48499 * 109.47081 * 89.99690 * 22 20 18 24 24 H 1.48502 * 109.47065 * 209.99938 * 22 20 18 25 25 H 1.48501 * 109.46854 * 329.99614 * 22 20 18 26 26 C 1.46925 * 120.63268 * 179.72147 * 11 9 8 27 27 C 1.34774 * 111.64433 * 0.02562 * 7 5 4 28 28 O 1.21238 * 127.15592 * 180.02562 * 27 7 5 29 29 H 1.09002 * 109.47153 * 298.61940 * 1 2 3 30 30 H 1.09001 * 109.46832 * 178.62131 * 1 2 3 31 31 H 1.09004 * 109.47261 * 58.62112 * 1 2 3 32 32 H 1.09001 * 109.47094 * 59.30428 * 3 2 1 33 33 H 1.09006 * 109.47039 * 179.30041 * 3 2 1 34 34 H 1.08994 * 109.47384 * 299.30113 * 3 2 1 35 35 H 0.97003 * 126.68943 * 298.48746 * 4 2 1 36 36 H 1.08993 * 109.47098 * 210.02541 * 8 7 5 37 37 H 1.08998 * 109.46988 * 330.03129 * 8 7 5 38 38 H 1.09001 * 109.58647 * 353.37906 * 12 11 9 39 39 H 1.09002 * 109.58641 * 113.80593 * 12 11 9 40 40 H 1.09003 * 109.49421 * 65.31279 * 13 12 11 41 41 H 1.09000 * 109.50078 * 185.38094 * 13 12 11 42 42 H 1.09001 * 109.45446 * 181.38077 * 14 13 12 43 43 H 1.08993 * 109.45897 * 301.35476 * 14 13 12 44 44 H 0.96991 * 120.00167 * 24.99709 * 17 15 14 45 45 H 0.96991 * 120.00139 * 180.02562 * 21 20 18 46 46 H 1.08999 * 109.58615 * 246.19563 * 26 11 9 47 47 H 1.09004 * 109.58330 * 6.62069 * 26 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0667 1.4328 0.0000 4 7 2.0483 -0.7477 1.1586 5 6 2.7600 -1.7771 0.6652 6 8 3.3292 -2.5982 1.3573 7 7 2.7711 -1.7961 -0.6725 8 6 3.4681 -2.8039 -1.4756 9 6 2.5387 -3.9581 -1.7498 10 8 1.4060 -3.9409 -1.3166 11 7 2.9667 -5.0101 -2.4755 12 6 4.3361 -5.0458 -3.0065 13 6 4.2734 -5.3010 -4.5157 14 6 3.4632 -6.5721 -4.7807 15 6 2.0353 -6.3862 -4.2626 16 1 1.5770 -5.5301 -4.7578 17 7 1.2519 -7.5915 -4.5449 18 6 -0.1103 -7.5114 -4.6600 19 1 -0.6071 -6.5597 -4.5424 20 6 -0.8526 -8.6533 -4.9280 21 7 -2.1619 -8.5764 -5.0383 22 14 0.0067 -10.2995 -5.1309 23 1 0.1038 -10.9732 -3.8110 24 1 -0.7710 -11.1519 -6.0657 25 1 1.3703 -10.0821 -5.6772 26 6 2.0743 -6.1456 -2.7460 27 6 2.0630 -0.7728 -1.1901 28 8 1.8880 -0.5230 -2.3635 29 1 -0.3633 0.4922 0.9021 30 1 -0.3633 -1.0274 -0.0247 31 1 -0.3634 0.5351 -0.8774 32 1 1.7028 1.9571 0.8837 33 1 3.1565 1.4126 0.0125 34 1 1.7232 1.9495 -0.8961 35 1 1.9049 -0.5381 2.0948 36 1 3.7851 -2.3606 -2.4195 37 1 4.3415 -3.1622 -0.9308 38 1 4.8263 -4.0907 -2.8175 39 1 4.8947 -5.8474 -2.5232 40 1 3.7943 -4.4549 -5.0082 41 1 5.2836 -5.4249 -4.9061 42 1 3.4377 -6.7695 -5.8524 43 1 3.9290 -7.4132 -4.2674 44 1 1.6980 -8.4463 -4.6502 45 1 -2.6806 -9.3744 -5.2252 46 1 2.4519 -7.0352 -2.2419 47 1 1.0716 -5.9164 -2.3851 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001000850159.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:31:20 Heat of formation + Delta-G solvation = -54.246770 kcal Electronic energy + Delta-G solvation = -30625.806273 eV Core-core repulsion = 26424.262833 eV Total energy + Delta-G solvation = -4201.543440 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -42.81349 -39.97572 -38.82552 -37.53785 -36.78831 -35.36892 -34.66696 -32.41798 -31.81365 -31.34843 -29.69890 -28.25974 -27.95556 -25.22350 -24.39436 -23.82604 -22.32358 -21.77827 -20.98706 -20.24899 -19.03547 -18.20453 -17.69435 -17.54059 -16.69390 -16.37941 -16.05056 -15.93948 -15.38784 -15.11239 -14.77416 -14.57594 -14.37048 -14.31751 -14.14499 -13.84755 -13.48476 -13.14192 -13.08610 -13.05060 -12.70689 -12.68027 -12.62768 -12.50672 -12.19256 -12.00885 -11.68039 -11.26573 -11.04038 -10.94196 -10.75567 -10.67884 -10.57656 -10.36877 -10.28923 -9.92036 -9.83614 -9.60006 -9.48294 -9.11980 -8.44680 -7.30214 -5.77104 -3.14729 1.41177 1.82126 2.63688 2.70487 2.81877 3.17845 3.36598 3.39191 3.44889 3.59190 4.12529 4.33839 4.38292 4.57788 4.61379 4.71130 4.86718 4.96458 5.00999 5.07590 5.09996 5.12579 5.17291 5.25860 5.34232 5.42190 5.44049 5.47518 5.50679 5.68700 5.74307 5.76915 5.87302 5.99947 6.05606 6.21776 6.36046 6.49236 6.59406 6.70420 6.76960 6.87587 7.12851 7.50138 7.88076 7.98594 8.22591 8.41548 9.18594 9.90084 10.08458 11.40912 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.016234 B = 0.002922 C = 0.002719 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1724.352306 B = 9578.607689 C =10295.954478 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.121 3.879 3 C -0.145 4.145 4 N -0.720 5.720 5 C 0.710 3.290 6 O -0.541 6.541 7 N -0.561 5.561 8 C 0.100 3.900 9 C 0.499 3.501 10 O -0.528 6.528 11 N -0.603 5.603 12 C 0.104 3.896 13 C -0.130 4.130 14 C -0.130 4.130 15 C 0.173 3.827 16 H 0.060 0.940 17 N -0.742 5.742 18 C -0.248 4.248 19 H 0.091 0.909 20 C 0.007 3.993 21 N -0.931 5.931 22 Si 0.885 3.115 23 H -0.284 1.284 24 H -0.291 1.291 25 H -0.277 1.277 26 C 0.094 3.906 27 C 0.535 3.465 28 O -0.458 6.458 29 H 0.079 0.921 30 H 0.074 0.926 31 H 0.085 0.915 32 H 0.080 0.920 33 H 0.067 0.933 34 H 0.085 0.915 35 H 0.439 0.561 36 H 0.124 0.876 37 H 0.125 0.875 38 H 0.078 0.922 39 H 0.073 0.927 40 H 0.069 0.931 41 H 0.074 0.926 42 H 0.069 0.931 43 H 0.061 0.939 44 H 0.363 0.637 45 H 0.260 0.740 46 H 0.062 0.938 47 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.171 20.399 10.045 27.902 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.030 3.970 3 C -0.204 4.204 4 N -0.385 5.385 5 C 0.411 3.589 6 O -0.414 6.414 7 N -0.307 5.307 8 C -0.025 4.025 9 C 0.284 3.716 10 O -0.403 6.403 11 N -0.337 5.337 12 C -0.019 4.019 13 C -0.169 4.169 14 C -0.168 4.168 15 C 0.062 3.938 16 H 0.078 0.922 17 N -0.384 5.384 18 C -0.378 4.378 19 H 0.109 0.891 20 C -0.189 4.189 21 N -0.578 5.578 22 Si 0.715 3.285 23 H -0.210 1.210 24 H -0.217 1.217 25 H -0.203 1.203 26 C -0.031 4.031 27 C 0.321 3.679 28 O -0.326 6.326 29 H 0.098 0.902 30 H 0.093 0.907 31 H 0.103 0.897 32 H 0.098 0.902 33 H 0.086 0.914 34 H 0.104 0.896 35 H 0.283 0.717 36 H 0.142 0.858 37 H 0.143 0.857 38 H 0.096 0.904 39 H 0.091 0.909 40 H 0.088 0.912 41 H 0.093 0.907 42 H 0.088 0.912 43 H 0.079 0.921 44 H 0.196 0.804 45 H 0.070 0.930 46 H 0.080 0.920 47 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 15.538 20.092 9.886 27.255 hybrid contribution 0.432 -1.372 0.252 1.460 sum 15.970 18.720 10.138 26.613 Atomic orbital electron populations 1.22024 0.89841 1.04637 1.04236 1.21467 0.97570 0.93976 0.83975 1.22003 1.01933 0.91898 1.04533 1.45616 1.54843 1.28971 1.09040 1.15744 0.79669 0.82045 0.81440 1.91015 1.48665 1.41092 1.60649 1.45870 1.49664 1.27293 1.07836 1.21558 0.95321 0.88073 0.97591 1.20600 0.88457 0.83616 0.78947 1.90742 1.19567 1.79185 1.50844 1.48196 1.13864 1.19751 1.51905 1.21803 0.82943 1.02139 0.94993 1.21883 1.00722 0.99312 0.94978 1.21863 0.96201 0.96876 1.01857 1.20546 0.90187 0.91280 0.91749 0.92169 1.42720 1.04760 1.04784 1.86135 1.19098 0.80777 0.96450 1.41494 0.89093 1.24687 0.95224 0.97405 1.01572 1.69706 1.04252 1.28500 1.55322 0.86553 0.78847 0.85326 0.77800 1.21038 1.21698 1.20280 1.22821 0.94888 0.85988 0.99372 1.20789 0.76770 0.80301 0.90036 1.90813 1.55757 1.69519 1.16492 0.90226 0.90719 0.89663 0.90151 0.91418 0.89630 0.71660 0.85842 0.85721 0.90410 0.90911 0.91222 0.90697 0.91232 0.92070 0.80449 0.92993 0.91963 0.88691 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.14 8.98 37.16 0.33 -0.80 16 2 C 0.12 0.99 1.37 -132.09 -0.18 0.81 16 3 C -0.15 -0.73 8.99 37.16 0.33 -0.40 16 4 N -0.72 -6.16 5.90 -52.94 -0.31 -6.48 16 5 C 0.71 9.01 8.62 -88.02 -0.76 8.25 16 6 O -0.54 -8.56 17.48 5.33 0.09 -8.47 16 7 N -0.56 -7.04 2.09 -122.02 -0.26 -7.30 16 8 C 0.10 1.17 4.53 -5.19 -0.02 1.14 16 9 C 0.50 8.08 7.77 -10.98 -0.09 8.00 16 10 O -0.53 -10.99 15.84 5.55 0.09 -10.90 16 11 N -0.60 -9.04 2.97 -172.51 -0.51 -9.56 16 12 C 0.10 1.07 6.34 -3.71 -0.02 1.05 16 13 C -0.13 -1.39 6.08 -26.61 -0.16 -1.55 16 14 C -0.13 -1.86 5.35 -26.69 -0.14 -2.01 16 15 C 0.17 3.32 2.93 -67.60 -0.20 3.12 16 16 H 0.06 1.27 8.08 -51.93 -0.42 0.85 16 17 N -0.74 -17.46 4.93 -53.10 -0.26 -17.73 16 18 C -0.25 -7.10 10.41 -15.06 -0.16 -7.26 16 19 H 0.09 2.84 8.06 -52.49 -0.42 2.42 16 20 C 0.01 0.21 5.50 -17.43 -0.10 0.12 16 21 N -0.93 -29.65 13.97 55.49 0.78 -28.88 16 22 Si 0.88 22.12 27.74 -169.99 -4.71 17.41 16 23 H -0.28 -7.08 7.11 56.52 0.40 -6.68 16 24 H -0.29 -7.37 7.11 56.52 0.40 -6.97 16 25 H -0.28 -6.42 6.52 56.52 0.37 -6.06 16 26 C 0.09 1.74 6.05 -3.50 -0.02 1.72 16 27 C 0.53 6.43 6.99 -10.55 -0.07 6.36 16 28 O -0.46 -6.58 17.76 5.59 0.10 -6.48 16 29 H 0.08 0.39 8.14 -51.93 -0.42 -0.03 16 30 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 31 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 32 H 0.08 0.24 8.14 -51.93 -0.42 -0.19 16 33 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 34 H 0.08 0.42 8.14 -51.93 -0.42 0.00 16 35 H 0.44 2.54 8.96 -40.82 -0.37 2.17 16 36 H 0.12 1.13 7.55 -51.93 -0.39 0.74 16 37 H 0.12 1.18 7.66 -51.93 -0.40 0.78 16 38 H 0.08 0.55 5.93 -51.93 -0.31 0.25 16 39 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 40 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 41 H 0.07 0.61 8.14 -51.93 -0.42 0.18 16 42 H 0.07 1.03 8.14 -51.93 -0.42 0.60 16 43 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 44 H 0.36 8.27 5.66 -40.82 -0.23 8.04 16 45 H 0.26 7.87 8.31 -40.82 -0.34 7.53 16 46 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 47 H 0.09 2.15 7.00 -51.93 -0.36 1.79 16 LS Contribution 384.25 15.07 5.79 5.79 Total: -1.00 -38.81 384.25 -7.61 -46.42 By element: Atomic # 1 Polarization: 14.76 SS G_CDS: -7.14 Total: 7.61 kcal Atomic # 6 Polarization: 19.80 SS G_CDS: -1.26 Total: 18.55 kcal Atomic # 7 Polarization: -69.37 SS G_CDS: -0.57 Total: -69.93 kcal Atomic # 8 Polarization: -26.13 SS G_CDS: 0.28 Total: -25.84 kcal Atomic # 14 Polarization: 22.12 SS G_CDS: -4.71 Total: 17.41 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -38.81 -7.61 -46.42 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001000850159.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.827 kcal (2) G-P(sol) polarization free energy of solvation -38.812 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.639 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.608 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.420 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.247 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds