Wall clock time and date at job start Tue Mar 31 2020 21:31:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53003 * 110.53404 * 2 1 4 4 N 1.47309 * 110.60043 * 122.83465 * 2 1 3 5 5 C 1.34528 * 106.62314 * 118.52864 * 4 2 1 6 6 O 1.21538 * 123.77405 * 179.97438 * 5 4 2 7 7 N 1.33791 * 112.45521 * 359.97438 * 5 4 2 8 8 C 1.46504 * 124.18023 * 179.97438 * 7 5 4 9 9 C 1.50702 * 109.46569 * 90.02720 * 8 7 5 10 10 O 1.21283 * 120.00399 * 359.97438 * 9 8 7 11 11 N 1.34777 * 119.99752 * 180.02562 * 9 8 7 12 12 C 1.46925 * 120.63077 * 359.97438 * 11 9 8 13 13 C 1.53196 * 108.78048 * 233.59333 * 12 11 9 14 14 C 1.53043 * 109.30804 * 305.36784 * 13 12 11 15 15 C 1.53034 * 109.54019 * 61.36529 * 14 13 12 16 16 H 1.09002 * 109.50433 * 58.61654 * 15 14 13 17 17 N 1.46504 * 109.49809 * 178.68302 * 15 14 13 18 18 C 1.36935 * 119.99898 * 204.99765 * 17 15 14 19 19 H 1.07999 * 120.00283 * 359.97438 * 18 17 15 20 20 C 1.38812 * 120.00177 * 179.97438 * 18 17 15 21 21 N 1.31621 * 120.00446 * 179.97438 * 20 18 17 22 22 Si 1.86804 * 119.99698 * 0.02562 * 20 18 17 23 23 H 1.48499 * 109.47081 * 89.99690 * 22 20 18 24 24 H 1.48502 * 109.47065 * 209.99938 * 22 20 18 25 25 H 1.48501 * 109.46854 * 329.99614 * 22 20 18 26 26 C 1.46925 * 120.63268 * 179.72147 * 11 9 8 27 27 C 1.34774 * 111.64433 * 0.02562 * 7 5 4 28 28 O 1.21238 * 127.15592 * 180.02562 * 27 7 5 29 29 H 1.09002 * 109.47153 * 298.61940 * 1 2 3 30 30 H 1.09001 * 109.46832 * 178.62131 * 1 2 3 31 31 H 1.09004 * 109.47261 * 58.62112 * 1 2 3 32 32 H 1.09001 * 109.47094 * 59.30428 * 3 2 1 33 33 H 1.09006 * 109.47039 * 179.30041 * 3 2 1 34 34 H 1.08994 * 109.47384 * 299.30113 * 3 2 1 35 35 H 0.97003 * 126.68943 * 298.48746 * 4 2 1 36 36 H 1.08993 * 109.47098 * 210.02541 * 8 7 5 37 37 H 1.08998 * 109.46988 * 330.03129 * 8 7 5 38 38 H 1.09001 * 109.58647 * 353.37906 * 12 11 9 39 39 H 1.09002 * 109.58641 * 113.80593 * 12 11 9 40 40 H 1.09003 * 109.49421 * 65.31279 * 13 12 11 41 41 H 1.09000 * 109.50078 * 185.38094 * 13 12 11 42 42 H 1.09001 * 109.45446 * 181.38077 * 14 13 12 43 43 H 1.08993 * 109.45897 * 301.35476 * 14 13 12 44 44 H 0.96991 * 120.00167 * 24.99709 * 17 15 14 45 45 H 0.96991 * 120.00139 * 180.02562 * 21 20 18 46 46 H 1.08999 * 109.58615 * 246.19563 * 26 11 9 47 47 H 1.09004 * 109.58330 * 6.62069 * 26 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0667 1.4328 0.0000 4 7 2.0483 -0.7477 1.1586 5 6 2.7600 -1.7771 0.6652 6 8 3.3292 -2.5982 1.3573 7 7 2.7711 -1.7961 -0.6725 8 6 3.4681 -2.8039 -1.4756 9 6 2.5387 -3.9581 -1.7498 10 8 1.4060 -3.9409 -1.3166 11 7 2.9667 -5.0101 -2.4755 12 6 4.3361 -5.0458 -3.0065 13 6 4.2734 -5.3010 -4.5157 14 6 3.4632 -6.5721 -4.7807 15 6 2.0353 -6.3862 -4.2626 16 1 1.5770 -5.5301 -4.7578 17 7 1.2519 -7.5915 -4.5449 18 6 -0.1103 -7.5114 -4.6600 19 1 -0.6071 -6.5597 -4.5424 20 6 -0.8526 -8.6533 -4.9280 21 7 -2.1619 -8.5764 -5.0383 22 14 0.0067 -10.2995 -5.1309 23 1 0.1038 -10.9732 -3.8110 24 1 -0.7710 -11.1519 -6.0657 25 1 1.3703 -10.0821 -5.6772 26 6 2.0743 -6.1456 -2.7460 27 6 2.0630 -0.7728 -1.1901 28 8 1.8880 -0.5230 -2.3635 29 1 -0.3633 0.4922 0.9021 30 1 -0.3633 -1.0274 -0.0247 31 1 -0.3634 0.5351 -0.8774 32 1 1.7028 1.9571 0.8837 33 1 3.1565 1.4126 0.0125 34 1 1.7232 1.9495 -0.8961 35 1 1.9049 -0.5381 2.0948 36 1 3.7851 -2.3606 -2.4195 37 1 4.3415 -3.1622 -0.9308 38 1 4.8263 -4.0907 -2.8175 39 1 4.8947 -5.8474 -2.5232 40 1 3.7943 -4.4549 -5.0082 41 1 5.2836 -5.4249 -4.9061 42 1 3.4377 -6.7695 -5.8524 43 1 3.9290 -7.4132 -4.2674 44 1 1.6980 -8.4463 -4.6502 45 1 -2.6806 -9.3744 -5.2252 46 1 2.4519 -7.0352 -2.2419 47 1 1.0716 -5.9164 -2.3851 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001000850159.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:31:20 Heat of formation + Delta-G solvation = -85.666369 kcal Electronic energy + Delta-G solvation = -30627.168729 eV Core-core repulsion = 26424.262833 eV Total energy + Delta-G solvation = -4202.905896 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -43.71646 -41.23102 -39.83114 -38.88062 -37.73034 -36.39680 -36.34203 -34.08964 -32.95384 -32.55684 -31.10437 -29.56059 -28.47202 -26.39752 -25.71340 -25.25422 -23.30559 -23.15773 -22.05606 -21.49195 -20.28003 -19.57018 -19.12973 -18.78030 -17.70149 -17.41419 -17.07959 -16.84223 -16.79487 -16.45697 -16.21172 -15.75720 -15.49529 -15.45045 -15.35785 -15.10546 -14.83121 -14.35810 -14.31469 -14.11245 -13.86384 -13.69293 -13.40180 -13.35618 -13.26414 -13.16308 -12.99823 -12.62225 -12.60100 -12.12699 -12.03528 -11.95934 -11.88584 -11.84224 -11.69195 -11.41161 -11.28665 -11.16650 -10.76568 -10.52831 -9.90500 -9.30646 -8.07631 -5.44239 0.47771 0.92834 1.34232 1.39100 1.41140 1.47387 1.69859 2.03150 2.09130 2.44592 2.78637 3.22716 3.31495 3.46906 3.50431 3.73934 3.80502 3.93632 3.97178 4.02634 4.06841 4.21101 4.24049 4.33106 4.40098 4.56453 4.58713 4.62847 4.69281 4.72594 4.82214 4.83363 4.87569 4.99639 5.06838 5.13011 5.17944 5.33669 5.41203 5.44001 5.70248 5.74324 5.86895 6.16026 6.21067 6.31707 6.95532 7.01068 7.02557 7.73718 7.96434 9.14310 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.016234 B = 0.002922 C = 0.002719 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1724.352306 B = 9578.607689 C =10295.954478 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.126 3.874 3 C -0.138 4.138 4 N -0.699 5.699 5 C 0.704 3.296 6 O -0.578 6.578 7 N -0.568 5.568 8 C 0.103 3.897 9 C 0.486 3.514 10 O -0.589 6.589 11 N -0.600 5.600 12 C 0.095 3.905 13 C -0.123 4.123 14 C -0.122 4.122 15 C 0.170 3.830 16 H 0.028 0.972 17 N -0.743 5.743 18 C -0.240 4.240 19 H 0.041 0.959 20 C -0.065 4.065 21 N -0.985 5.985 22 Si 0.965 3.035 23 H -0.278 1.278 24 H -0.294 1.294 25 H -0.242 1.242 26 C 0.105 3.895 27 C 0.524 3.476 28 O -0.488 6.488 29 H 0.114 0.886 30 H 0.039 0.961 31 H 0.089 0.911 32 H 0.110 0.890 33 H 0.070 0.930 34 H 0.089 0.911 35 H 0.453 0.547 36 H 0.154 0.846 37 H 0.154 0.846 38 H 0.119 0.881 39 H 0.096 0.904 40 H 0.061 0.939 41 H 0.120 0.880 42 H 0.069 0.931 43 H 0.079 0.921 44 H 0.371 0.629 45 H 0.260 0.740 46 H 0.070 0.930 47 H 0.038 0.962 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.367 21.228 10.458 31.222 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.036 3.964 3 C -0.196 4.196 4 N -0.365 5.365 5 C 0.404 3.596 6 O -0.454 6.454 7 N -0.313 5.313 8 C -0.022 4.022 9 C 0.274 3.726 10 O -0.470 6.470 11 N -0.333 5.333 12 C -0.026 4.026 13 C -0.161 4.161 14 C -0.160 4.160 15 C 0.061 3.939 16 H 0.046 0.954 17 N -0.387 5.387 18 C -0.371 4.371 19 H 0.059 0.941 20 C -0.256 4.256 21 N -0.635 5.635 22 Si 0.791 3.209 23 H -0.204 1.204 24 H -0.221 1.221 25 H -0.166 1.166 26 C -0.020 4.020 27 C 0.312 3.688 28 O -0.359 6.359 29 H 0.133 0.867 30 H 0.058 0.942 31 H 0.107 0.893 32 H 0.129 0.871 33 H 0.089 0.911 34 H 0.108 0.892 35 H 0.300 0.700 36 H 0.171 0.829 37 H 0.172 0.828 38 H 0.137 0.863 39 H 0.114 0.886 40 H 0.080 0.920 41 H 0.138 0.862 42 H 0.087 0.913 43 H 0.097 0.903 44 H 0.205 0.795 45 H 0.068 0.932 46 H 0.089 0.911 47 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges 19.821 20.988 10.310 30.654 hybrid contribution -0.947 -1.515 0.138 1.792 sum 18.874 19.473 10.448 29.061 Atomic orbital electron populations 1.22059 0.89361 1.02904 1.06255 1.21642 0.97719 0.95178 0.81841 1.22038 1.02130 0.89233 1.06202 1.45578 1.53250 1.27679 1.09980 1.15954 0.79855 0.82408 0.81355 1.90982 1.50502 1.42609 1.61301 1.46044 1.49775 1.27416 1.08074 1.21747 0.94550 0.86404 0.99463 1.21546 0.88393 0.84651 0.78019 1.90713 1.22435 1.80496 1.53314 1.48277 1.15286 1.18223 1.51518 1.22293 0.80153 1.05458 0.94657 1.21899 1.02199 0.96744 0.95265 1.21809 0.92705 0.99811 1.01667 1.20723 0.92832 0.88524 0.91843 0.95402 1.42638 1.02985 1.06665 1.86362 1.18940 0.83278 0.94560 1.40321 0.94090 1.25651 0.95957 1.02185 1.01840 1.69920 1.06497 1.29786 1.57303 0.85275 0.79002 0.78804 0.77839 1.20443 1.22050 1.16563 1.22287 0.93291 0.87779 0.98670 1.21514 0.76174 0.80380 0.90704 1.90786 1.56764 1.70392 1.17913 0.86732 0.94179 0.89255 0.87138 0.91059 0.89240 0.69960 0.82898 0.82808 0.86316 0.88593 0.92034 0.86227 0.91276 0.90277 0.79461 0.93178 0.91128 0.94288 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.15 8.98 71.98 0.65 -1.50 16 2 C 0.13 1.91 1.37 2.98 0.00 1.91 16 3 C -0.14 -1.00 8.99 71.98 0.65 -0.35 16 4 N -0.70 -11.11 5.90 -439.82 -2.60 -13.71 16 5 C 0.70 17.51 8.62 179.44 1.55 19.06 16 6 O -0.58 -18.13 17.48 -3.83 -0.07 -18.19 16 7 N -0.57 -14.02 2.09 -777.20 -1.63 -15.64 16 8 C 0.10 2.27 4.53 85.63 0.39 2.65 16 9 C 0.49 16.09 7.77 87.66 0.68 16.77 16 10 O -0.59 -26.39 15.84 -3.04 -0.05 -26.44 16 11 N -0.60 -17.77 2.97 -818.09 -2.43 -20.19 16 12 C 0.09 1.59 6.34 86.36 0.55 2.13 16 13 C -0.12 -2.14 6.08 30.67 0.19 -1.95 16 14 C -0.12 -3.19 5.35 30.62 0.16 -3.03 16 15 C 0.17 6.67 2.93 45.20 0.13 6.80 16 16 H 0.03 1.26 8.08 -2.39 -0.02 1.24 16 17 N -0.74 -35.61 4.93 -321.92 -1.59 -37.20 16 18 C -0.24 -14.48 10.41 84.03 0.88 -13.60 16 19 H 0.04 2.81 8.06 -2.91 -0.02 2.79 16 20 C -0.07 -3.98 5.50 84.86 0.47 -3.51 16 21 N -0.99 -65.85 13.97 21.65 0.30 -65.55 16 22 Si 0.97 46.15 27.74 68.60 1.90 48.06 16 23 H -0.28 -13.03 7.11 99.48 0.71 -12.32 16 24 H -0.29 -14.18 7.11 99.48 0.71 -13.47 16 25 H -0.24 -10.07 6.52 99.48 0.65 -9.42 16 26 C 0.11 4.10 6.05 86.50 0.52 4.62 16 27 C 0.52 12.50 6.99 87.94 0.61 13.11 16 28 O -0.49 -14.16 17.76 -2.90 -0.05 -14.21 16 29 H 0.11 0.85 8.14 -2.39 -0.02 0.83 16 30 H 0.04 0.87 8.14 -2.39 -0.02 0.85 16 31 H 0.09 1.25 8.14 -2.38 -0.02 1.23 16 32 H 0.11 0.18 8.14 -2.39 -0.02 0.17 16 33 H 0.07 0.51 8.14 -2.38 -0.02 0.49 16 34 H 0.09 0.65 8.14 -2.39 -0.02 0.63 16 35 H 0.45 4.41 8.96 -92.71 -0.83 3.58 16 36 H 0.15 2.41 7.55 -2.39 -0.02 2.40 16 37 H 0.15 2.47 7.66 -2.39 -0.02 2.45 16 38 H 0.12 1.08 5.93 -2.39 -0.01 1.06 16 39 H 0.10 1.27 8.14 -2.39 -0.02 1.26 16 40 H 0.06 1.21 8.14 -2.39 -0.02 1.19 16 41 H 0.12 1.18 8.14 -2.39 -0.02 1.16 16 42 H 0.07 1.85 8.14 -2.39 -0.02 1.83 16 43 H 0.08 1.84 8.14 -2.39 -0.02 1.82 16 44 H 0.37 16.41 5.66 -92.71 -0.52 15.89 16 45 H 0.26 16.37 8.31 -92.71 -0.77 15.60 16 46 H 0.07 2.59 8.14 -2.39 -0.02 2.57 16 47 H 0.04 1.93 7.00 -2.38 -0.02 1.92 16 Total: -1.00 -95.06 384.25 0.82 -94.24 By element: Atomic # 1 Polarization: 26.14 SS G_CDS: -0.41 Total: 25.73 kcal Atomic # 6 Polarization: 35.69 SS G_CDS: 7.42 Total: 43.11 kcal Atomic # 7 Polarization: -144.36 SS G_CDS: -7.93 Total: -152.29 kcal Atomic # 8 Polarization: -58.68 SS G_CDS: -0.17 Total: -58.84 kcal Atomic # 14 Polarization: 46.15 SS G_CDS: 1.90 Total: 48.06 kcal Total: -95.06 0.82 -94.24 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001000850159.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.571 kcal (2) G-P(sol) polarization free energy of solvation -95.056 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.485 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.819 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -94.237 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.666 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds