Wall clock time and date at job start Tue Mar 31 2020 21:31:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53002 * 110.65881 * 2 1 4 4 C 1.51586 * 110.76277 * 237.18249 * 2 1 3 5 5 O 1.21240 * 127.15454 * 61.64253 * 4 2 1 6 6 N 1.34762 * 105.68781 * 241.71376 * 4 2 1 7 7 C 1.33800 * 111.64216 * 359.66179 * 6 4 2 8 8 O 1.21540 * 123.76902 * 180.22606 * 7 6 4 9 9 N 1.34523 * 112.45669 * 0.22709 * 7 6 4 10 10 C 1.46498 * 126.68903 * 180.02562 * 9 7 6 11 11 C 1.50693 * 109.47417 * 89.97582 * 10 9 7 12 12 O 1.21287 * 119.99765 * 359.97438 * 11 10 9 13 13 N 1.34773 * 120.00191 * 180.02562 * 11 10 9 14 14 C 1.46505 * 120.00006 * 180.02562 * 13 11 10 15 15 C 1.53037 * 109.45726 * 275.02585 * 14 13 11 16 16 C 1.53193 * 109.31278 * 178.60321 * 15 14 13 17 17 N 1.46932 * 108.76463 * 54.65292 * 16 15 14 18 18 C 1.36938 * 120.63005 * 126.41087 * 17 16 15 19 19 H 1.08006 * 119.99850 * 331.82446 * 18 17 16 20 20 C 1.38810 * 119.99770 * 151.82391 * 18 17 16 21 21 N 1.31612 * 120.00257 * 343.06954 * 20 18 17 22 22 Si 1.86801 * 119.99569 * 163.07340 * 20 18 17 23 23 H 1.48500 * 109.47176 * 89.99951 * 22 20 18 24 24 H 1.48507 * 109.47095 * 210.00100 * 22 20 18 25 25 H 1.48500 * 109.47296 * 329.99731 * 22 20 18 26 26 C 1.46925 * 118.73901 * 306.38378 * 17 16 15 27 27 C 1.53040 * 109.45877 * 154.97058 * 14 13 11 28 28 H 1.08997 * 109.47104 * 297.08556 * 1 2 3 29 29 H 1.09002 * 109.46986 * 57.08255 * 1 2 3 30 30 H 1.09000 * 109.47675 * 177.08287 * 1 2 3 31 31 H 1.08995 * 109.47001 * 182.91547 * 3 2 1 32 32 H 1.08995 * 109.46604 * 302.91721 * 3 2 1 33 33 H 1.09000 * 109.46619 * 62.91484 * 3 2 1 34 34 H 0.96994 * 124.18193 * 179.97438 * 6 4 2 35 35 H 1.09002 * 109.46951 * 209.97503 * 10 9 7 36 36 H 1.09005 * 109.47349 * 329.96919 * 10 9 7 37 37 H 0.97000 * 120.00204 * 359.97438 * 13 11 10 38 38 H 1.08997 * 109.46199 * 34.99938 * 14 13 11 39 39 H 1.09004 * 109.49994 * 298.55967 * 15 14 13 40 40 H 1.08990 * 109.50216 * 58.66236 * 15 14 13 41 41 H 1.08999 * 109.59836 * 294.86642 * 16 15 14 42 42 H 1.08999 * 109.70842 * 174.50295 * 16 15 14 43 43 H 0.97004 * 119.99910 * 180.02562 * 21 20 18 44 44 H 1.08999 * 109.58768 * 293.82058 * 26 17 16 45 45 H 1.08998 * 109.70046 * 173.46727 * 26 17 16 46 46 H 1.08997 * 109.49849 * 301.33261 * 27 14 13 47 47 H 1.09002 * 109.49978 * 61.43358 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0698 1.4316 0.0000 4 6 2.0674 -0.7682 -1.1912 5 8 1.8978 -0.5128 -2.3642 6 7 2.7714 -1.7949 -0.6752 7 6 2.7598 -1.7781 0.6627 8 8 3.3286 -2.6006 1.3535 9 7 2.0483 -0.7494 1.1575 10 6 1.8315 -0.4351 2.5719 11 6 2.9259 0.4805 3.0565 12 8 3.8011 0.8353 2.2955 13 7 2.9327 0.9044 4.3359 14 6 3.9963 1.7950 4.8068 15 6 5.2087 0.9622 5.2294 16 6 6.3313 1.8983 5.6883 17 7 5.8098 2.7815 6.7404 18 6 6.4456 2.8774 7.9494 19 1 7.0164 2.0420 8.3271 20 6 6.3564 4.0484 8.6894 21 7 5.9602 5.1630 8.1124 22 14 6.7988 4.0422 10.5043 23 1 8.2438 4.3456 10.6626 24 1 5.9963 5.0714 11.2129 25 1 6.5078 2.7047 11.0802 26 6 4.5935 3.5602 6.4703 27 6 3.4905 2.6055 6.0024 28 1 -0.3633 0.4679 0.9149 29 1 -0.3633 0.5585 -0.8627 30 1 -0.3634 -1.0263 -0.0523 31 1 3.1583 1.4095 -0.0523 32 1 1.6754 1.9685 -0.8627 33 1 1.7601 1.9366 0.9150 34 1 3.2335 -2.4609 -1.2077 35 1 0.8665 0.0574 2.6909 36 1 1.8437 -1.3561 3.1548 37 1 2.2330 0.6204 4.9446 38 1 4.2840 2.4735 4.0037 39 1 4.9281 0.3012 6.0495 40 1 5.5542 0.3674 4.3840 41 1 6.6751 2.4976 4.8453 42 1 7.1612 1.3115 6.0820 43 1 5.8982 5.9814 8.6296 44 1 4.7956 4.2951 5.6911 45 1 4.2742 4.0700 7.3793 46 1 2.6129 3.1805 5.7070 47 1 3.2262 1.9289 6.8150 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001003909454.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:31:51 Heat of formation + Delta-G solvation = -54.197068 kcal Electronic energy + Delta-G solvation = -30410.166138 eV Core-core repulsion = 26208.624853 eV Total energy + Delta-G solvation = -4201.541285 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -42.82583 -39.82233 -38.92194 -37.50121 -36.82913 -35.15021 -34.46174 -32.75229 -32.10384 -30.26716 -29.64573 -28.17965 -27.92612 -25.04237 -24.65011 -22.71251 -22.24179 -21.52158 -21.15010 -20.26850 -19.33044 -18.44784 -17.56788 -16.98079 -16.74066 -16.45057 -16.26414 -16.07414 -15.17460 -15.09863 -14.77709 -14.70262 -14.49974 -13.99276 -13.78995 -13.58674 -13.43977 -13.16582 -13.03042 -12.97509 -12.67498 -12.60325 -12.40486 -12.15587 -11.93247 -11.49604 -11.15933 -11.13132 -10.90853 -10.73040 -10.67786 -10.53860 -10.48199 -10.32403 -10.20992 -10.07257 -9.82043 -9.63616 -9.17409 -8.79092 -8.48818 -6.71072 -5.82473 -3.24467 1.26496 1.78932 2.55373 2.62233 2.70387 3.31279 3.36113 3.42641 3.44911 3.57779 4.10818 4.32551 4.47337 4.50177 4.67295 4.83317 5.00316 5.03888 5.18698 5.29732 5.33896 5.38261 5.44093 5.46591 5.49330 5.55682 5.67906 5.82372 5.88986 5.94352 6.04167 6.21842 6.27905 6.47962 6.53618 6.53932 6.68511 6.77531 6.85046 6.96543 7.01134 7.27333 7.52118 7.62275 7.77269 7.80177 8.25615 8.41876 9.18134 9.81185 10.38086 11.26573 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.028355 B = 0.002334 C = 0.002278 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 987.248906 B =11993.924202 C =12287.635577 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.120 3.880 3 C -0.141 4.141 4 C 0.537 3.463 5 O -0.467 6.467 6 N -0.679 5.679 7 C 0.709 3.291 8 O -0.538 6.538 9 N -0.598 5.598 10 C 0.131 3.869 11 C 0.488 3.512 12 O -0.527 6.527 13 N -0.721 5.721 14 C 0.153 3.847 15 C -0.139 4.139 16 C 0.148 3.852 17 N -0.593 5.593 18 C -0.252 4.252 19 H 0.066 0.934 20 C 0.002 3.998 21 N -0.904 5.904 22 Si 0.902 3.098 23 H -0.287 1.287 24 H -0.290 1.290 25 H -0.279 1.279 26 C 0.175 3.825 27 C -0.146 4.146 28 H 0.079 0.921 29 H 0.086 0.914 30 H 0.067 0.933 31 H 0.078 0.922 32 H 0.078 0.922 33 H 0.076 0.924 34 H 0.431 0.569 35 H 0.116 0.884 36 H 0.120 0.880 37 H 0.396 0.604 38 H 0.081 0.919 39 H 0.058 0.942 40 H 0.054 0.946 41 H 0.019 0.981 42 H 0.056 0.944 43 H 0.254 0.746 44 H 0.020 0.980 45 H 0.092 0.908 46 H 0.054 0.946 47 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.776 -10.833 -14.929 24.272 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C 0.031 3.969 3 C -0.199 4.199 4 C 0.323 3.677 5 O -0.336 6.336 6 N -0.349 5.349 7 C 0.410 3.590 8 O -0.411 6.411 9 N -0.337 5.337 10 C 0.005 3.995 11 C 0.272 3.728 12 O -0.402 6.402 13 N -0.372 5.372 14 C 0.050 3.950 15 C -0.179 4.179 16 C 0.021 3.979 17 N -0.315 5.315 18 C -0.382 4.382 19 H 0.083 0.917 20 C -0.196 4.196 21 N -0.548 5.548 22 Si 0.732 3.268 23 H -0.214 1.214 24 H -0.216 1.216 25 H -0.205 1.205 26 C 0.048 3.952 27 C -0.186 4.186 28 H 0.098 0.902 29 H 0.104 0.896 30 H 0.086 0.914 31 H 0.097 0.903 32 H 0.097 0.903 33 H 0.095 0.905 34 H 0.274 0.726 35 H 0.134 0.866 36 H 0.137 0.863 37 H 0.230 0.770 38 H 0.099 0.901 39 H 0.077 0.923 40 H 0.073 0.927 41 H 0.037 0.963 42 H 0.074 0.926 43 H 0.064 0.936 44 H 0.038 0.962 45 H 0.110 0.890 46 H 0.073 0.927 47 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -14.996 -10.604 -15.479 24.019 hybrid contribution 0.221 -0.398 1.036 1.131 sum -14.776 -11.002 -14.443 23.409 Atomic orbital electron populations 1.21984 0.90086 1.03689 1.04555 1.21576 0.97006 0.94987 0.83322 1.21971 1.03234 0.91004 1.03663 1.20735 0.76976 0.80255 0.89771 1.90828 1.57234 1.68984 1.16578 1.44320 1.51470 1.30437 1.08628 1.15744 0.79414 0.82341 0.81533 1.91039 1.47627 1.41806 1.60597 1.47145 1.53555 1.27617 1.05339 1.21168 0.98500 1.01166 0.78647 1.20984 0.87346 0.81738 0.82755 1.90721 1.37899 1.56684 1.54934 1.46317 1.29780 1.50304 1.10791 1.21051 0.86462 0.90719 0.96793 1.22365 0.96809 0.98832 0.99917 1.20871 0.93602 0.91911 0.91552 1.44095 1.26031 1.49541 1.11873 1.19183 1.28236 0.96694 0.94066 0.91667 1.25050 1.00822 0.94755 0.99023 1.70020 1.51542 0.98634 1.34619 0.86306 0.77976 0.77252 0.85290 1.21371 1.21555 1.20495 1.20730 0.83751 0.90430 1.00277 1.22539 1.00337 0.99625 0.96102 0.90172 0.89562 0.91410 0.90331 0.90324 0.90537 0.72621 0.86620 0.86257 0.77015 0.90054 0.92282 0.92748 0.96272 0.92564 0.93597 0.96187 0.89026 0.92745 0.92115 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.73 8.80 37.16 0.33 -0.40 16 2 C 0.12 0.97 1.14 -132.09 -0.15 0.82 16 3 C -0.14 -1.24 7.56 37.16 0.28 -0.96 16 4 C 0.54 5.15 7.48 -10.56 -0.08 5.07 16 5 O -0.47 -5.41 18.02 5.59 0.10 -5.31 16 6 N -0.68 -6.36 5.70 -15.79 -0.09 -6.45 16 7 C 0.71 8.26 8.68 -88.02 -0.76 7.50 16 8 O -0.54 -8.14 17.71 5.33 0.09 -8.05 16 9 N -0.60 -5.66 2.00 -166.45 -0.33 -6.00 16 10 C 0.13 1.04 6.33 -5.20 -0.03 1.01 16 11 C 0.49 5.94 7.43 -10.99 -0.08 5.86 16 12 O -0.53 -8.57 14.35 5.55 0.08 -8.49 16 13 N -0.72 -8.56 5.08 -53.77 -0.27 -8.84 16 14 C 0.15 2.47 2.42 -67.89 -0.16 2.30 16 15 C -0.14 -2.49 5.65 -26.61 -0.15 -2.64 16 16 C 0.15 3.15 6.52 -3.71 -0.02 3.13 16 17 N -0.59 -14.56 2.99 -172.31 -0.52 -15.07 16 18 C -0.25 -6.82 9.58 -15.06 -0.14 -6.96 16 19 H 0.07 1.74 7.89 -52.48 -0.41 1.33 16 20 C 0.00 0.05 4.92 -17.43 -0.09 -0.03 16 21 N -0.90 -25.71 11.19 55.49 0.62 -25.09 16 22 Si 0.90 21.30 29.59 -169.99 -5.03 16.27 16 23 H -0.29 -6.82 7.11 56.52 0.40 -6.41 16 24 H -0.29 -6.85 7.11 56.52 0.40 -6.44 16 25 H -0.28 -6.48 7.11 56.52 0.40 -6.07 16 26 C 0.17 3.96 5.30 -3.71 -0.02 3.94 16 27 C -0.15 -2.49 5.55 -26.61 -0.15 -2.63 16 28 H 0.08 0.28 7.43 -51.93 -0.39 -0.11 16 29 H 0.09 0.39 8.14 -51.93 -0.42 -0.03 16 30 H 0.07 0.32 8.14 -51.93 -0.42 -0.10 16 31 H 0.08 0.91 7.53 -51.93 -0.39 0.52 16 32 H 0.08 0.58 8.14 -51.93 -0.42 0.15 16 33 H 0.08 0.65 7.87 -51.93 -0.41 0.25 16 34 H 0.43 3.15 8.96 -40.82 -0.37 2.79 16 35 H 0.12 0.47 7.36 -51.93 -0.38 0.08 16 36 H 0.12 0.85 8.03 -51.93 -0.42 0.43 16 37 H 0.40 3.45 8.60 -40.82 -0.35 3.10 16 38 H 0.08 1.49 7.58 -51.93 -0.39 1.10 16 39 H 0.06 1.06 8.14 -51.93 -0.42 0.63 16 40 H 0.05 0.99 8.14 -51.93 -0.42 0.56 16 41 H 0.02 0.43 8.14 -51.93 -0.42 0.00 16 42 H 0.06 1.19 7.93 -51.93 -0.41 0.78 16 43 H 0.25 6.98 8.31 -40.82 -0.34 6.64 16 44 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 45 H 0.09 2.32 6.07 -51.93 -0.31 2.01 16 46 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 47 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 LS Contribution 382.14 15.07 5.76 5.76 Total: -1.00 -35.01 382.14 -8.00 -43.01 By element: Atomic # 1 Polarization: 9.42 SS G_CDS: -7.18 Total: 2.25 kcal Atomic # 6 Polarization: 17.24 SS G_CDS: -1.24 Total: 16.01 kcal Atomic # 7 Polarization: -60.86 SS G_CDS: -0.59 Total: -61.45 kcal Atomic # 8 Polarization: -22.12 SS G_CDS: 0.27 Total: -21.84 kcal Atomic # 14 Polarization: 21.30 SS G_CDS: -5.03 Total: 16.27 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -35.01 -8.00 -43.01 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001003909454.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.192 kcal (2) G-P(sol) polarization free energy of solvation -35.008 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.200 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.997 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.005 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.197 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds