Wall clock time and date at job start Tue Mar 31 2020 21:31:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53002 * 110.53130 * 2 1 4 4 N 1.47313 * 110.60068 * 237.17092 * 2 1 3 5 5 C 1.34860 * 106.43747 * 241.51949 * 4 2 1 6 6 O 1.21543 * 123.72926 * 179.97438 * 5 4 2 7 7 N 1.33794 * 112.50397 * 359.86524 * 5 4 2 8 8 C 1.46501 * 124.17794 * 180.12072 * 7 5 4 9 9 C 1.50693 * 109.47229 * 269.95750 * 8 7 5 10 10 O 1.21284 * 119.99967 * 0.02562 * 9 8 7 11 11 N 1.34775 * 120.00207 * 179.97438 * 9 8 7 12 12 C 1.46502 * 120.00215 * 180.02562 * 11 9 8 13 13 C 1.53035 * 109.45997 * 275.02873 * 12 11 9 14 14 C 1.53195 * 109.31267 * 178.60369 * 13 12 11 15 15 N 1.46923 * 108.76532 * 54.65413 * 14 13 12 16 16 C 1.36938 * 120.62988 * 126.40862 * 15 14 13 17 17 H 1.08002 * 119.99806 * 332.60867 * 16 15 14 18 18 C 1.38808 * 120.00049 * 152.60830 * 16 15 14 19 19 N 1.31617 * 120.00059 * 159.34434 * 18 16 15 20 20 Si 1.86802 * 120.00280 * 339.34442 * 18 16 15 21 21 H 1.48495 * 109.47132 * 92.94241 * 20 18 16 22 22 H 1.48496 * 109.47359 * 212.94744 * 20 18 16 23 23 H 1.48505 * 109.46689 * 332.94434 * 20 18 16 24 24 C 1.46928 * 118.74002 * 306.38620 * 15 14 13 25 25 C 1.53045 * 109.45743 * 154.97730 * 12 11 9 26 26 C 1.34768 * 111.64077 * 0.08947 * 7 5 4 27 27 O 1.21238 * 127.15325 * 180.02562 * 26 7 5 28 28 H 1.09007 * 109.47040 * 59.29978 * 1 2 3 29 29 H 1.09006 * 109.46972 * 179.29514 * 1 2 3 30 30 H 1.08994 * 109.47544 * 299.30068 * 1 2 3 31 31 H 1.08993 * 109.47388 * 60.70163 * 3 2 1 32 32 H 1.09004 * 109.47030 * 180.69863 * 3 2 1 33 33 H 1.09002 * 109.47055 * 300.69869 * 3 2 1 34 34 H 0.97001 * 126.68983 * 61.44114 * 4 2 1 35 35 H 1.08997 * 109.47364 * 29.96207 * 8 7 5 36 36 H 1.08998 * 109.46460 * 149.96162 * 8 7 5 37 37 H 0.96999 * 119.99953 * 0.02562 * 11 9 8 38 38 H 1.08991 * 109.46119 * 35.00416 * 12 11 9 39 39 H 1.09003 * 109.50029 * 298.56680 * 13 12 11 40 40 H 1.08997 * 109.49977 * 58.66450 * 13 12 11 41 41 H 1.09002 * 109.59473 * 294.86828 * 14 13 12 42 42 H 1.08997 * 109.70422 * 174.50964 * 14 13 12 43 43 H 0.96998 * 120.00162 * 179.97438 * 19 18 16 44 44 H 1.08994 * 109.58804 * 293.82050 * 24 15 14 45 45 H 1.08998 * 109.70215 * 173.46997 * 24 15 14 46 46 H 1.09002 * 109.49729 * 301.33715 * 25 12 11 47 47 H 1.09001 * 109.50156 * 61.43264 * 25 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0666 1.4328 0.0000 4 7 2.0483 -0.7476 -1.1587 5 6 2.7600 -1.7789 -0.6601 6 8 3.3292 -2.6021 -1.3498 7 7 2.7716 -1.7938 0.6777 8 6 3.4687 -2.7992 1.4835 9 6 2.5395 -3.9524 1.7619 10 8 1.4066 -3.9364 1.3293 11 7 2.9677 -5.0022 2.4906 12 6 2.0645 -6.1236 2.7608 13 6 1.2101 -5.8054 3.9899 14 6 0.2429 -6.9650 4.2485 15 7 1.0157 -8.2098 4.3569 16 6 0.8787 -9.0231 5.4501 17 1 0.5842 -8.6045 6.4011 18 6 1.1183 -10.3856 5.3358 19 7 1.3889 -11.0984 6.4087 20 14 1.0568 -11.2075 3.6595 21 1 2.4199 -11.2340 3.0709 22 1 0.5544 -12.5971 3.8076 23 1 0.1471 -10.4447 2.7674 24 6 1.9379 -8.5658 3.2699 25 6 2.8859 -7.3882 3.0222 26 6 2.0633 -0.7692 1.1923 27 8 1.8893 -0.5153 2.3649 28 1 -0.3633 0.5247 -0.8837 29 1 -0.3633 -1.0277 -0.0126 30 1 -0.3634 0.5029 0.8961 31 1 1.7232 1.9495 0.8961 32 1 3.1564 1.4127 -0.0125 33 1 1.7027 1.9571 -0.8837 34 1 1.9042 -0.5385 -2.0949 35 1 4.3419 -3.1593 0.9395 36 1 3.7863 -2.3529 2.4259 37 1 3.8739 -5.0152 2.8363 38 1 1.4162 -6.2833 1.8993 39 1 1.8564 -5.6702 4.8572 40 1 0.6431 -4.8917 3.8122 41 1 -0.4628 -7.0438 3.4215 42 1 -0.3005 -6.7901 5.1771 43 1 1.5560 -12.0506 6.3289 44 1 1.3705 -8.7751 2.3632 45 1 2.5150 -9.4466 3.5513 46 1 3.5117 -7.6011 2.1555 47 1 3.5163 -7.2379 3.8986 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001004094328.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:31:55 Heat of formation + Delta-G solvation = -49.266543 kcal Electronic energy + Delta-G solvation = -30324.687558 eV Core-core repulsion = 26123.360077 eV Total energy + Delta-G solvation = -4201.327481 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -42.90316 -39.85798 -38.93569 -37.74273 -36.91148 -35.51894 -34.61049 -32.32157 -31.86843 -30.55824 -30.36019 -28.73649 -28.06315 -25.08353 -24.47811 -23.03772 -22.60940 -21.78122 -21.00354 -20.35476 -19.62753 -18.33907 -17.87094 -17.03862 -16.72379 -16.34511 -16.17315 -16.06192 -15.58160 -15.21141 -14.91887 -14.76250 -14.47840 -14.16818 -14.05594 -13.81419 -13.55347 -13.28518 -13.17869 -12.98248 -12.81220 -12.78546 -12.52682 -12.34016 -12.12059 -12.00542 -11.79891 -11.16352 -11.03360 -10.83932 -10.71450 -10.57627 -10.48536 -10.30395 -10.14775 -9.94471 -9.85563 -9.59979 -9.46471 -8.89738 -8.63710 -7.00079 -5.95535 -3.31495 1.29369 1.70648 2.50341 2.60246 2.70545 3.21538 3.31062 3.48932 3.49489 3.52500 4.01975 4.23706 4.52152 4.52523 4.53854 4.79463 4.92022 4.94644 4.98115 4.99904 5.07179 5.13602 5.17396 5.30922 5.34123 5.38658 5.41667 5.60694 5.64668 5.80647 6.02732 6.05019 6.15500 6.30322 6.38234 6.39637 6.56914 6.62606 6.64524 6.65325 6.68509 6.90440 7.01005 7.46221 7.77597 7.95238 8.13777 8.32342 8.93055 9.71192 10.08704 11.20405 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.025983 B = 0.002467 C = 0.002394 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1077.349968 B =11347.204666 C =11692.128099 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.120 3.880 3 C -0.146 4.146 4 N -0.721 5.721 5 C 0.710 3.290 6 O -0.539 6.539 7 N -0.560 5.560 8 C 0.097 3.903 9 C 0.499 3.501 10 O -0.531 6.531 11 N -0.718 5.718 12 C 0.151 3.849 13 C -0.141 4.141 14 C 0.151 3.849 15 N -0.606 5.606 16 C -0.259 4.259 17 H 0.086 0.914 18 C 0.023 3.977 19 N -0.908 5.908 20 Si 0.881 3.119 21 H -0.288 1.288 22 H -0.303 1.303 23 H -0.270 1.270 24 C 0.129 3.871 25 C -0.140 4.140 26 C 0.535 3.465 27 O -0.459 6.459 28 H 0.079 0.921 29 H 0.073 0.927 30 H 0.084 0.916 31 H 0.085 0.915 32 H 0.067 0.933 33 H 0.080 0.920 34 H 0.439 0.561 35 H 0.127 0.873 36 H 0.125 0.875 37 H 0.399 0.601 38 H 0.083 0.917 39 H 0.064 0.936 40 H 0.058 0.942 41 H 0.024 0.976 42 H 0.066 0.934 43 H 0.263 0.737 44 H 0.027 0.973 45 H 0.078 0.922 46 H 0.060 0.940 47 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.743 26.667 -14.636 30.787 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.030 3.970 3 C -0.204 4.204 4 N -0.386 5.386 5 C 0.410 3.590 6 O -0.412 6.412 7 N -0.306 5.306 8 C -0.028 4.028 9 C 0.283 3.717 10 O -0.407 6.407 11 N -0.369 5.369 12 C 0.048 3.952 13 C -0.181 4.181 14 C 0.025 3.975 15 N -0.330 5.330 16 C -0.387 4.387 17 H 0.104 0.896 18 C -0.176 4.176 19 N -0.551 5.551 20 Si 0.712 3.288 21 H -0.216 1.216 22 H -0.231 1.231 23 H -0.195 1.195 24 C 0.003 3.997 25 C -0.180 4.180 26 C 0.322 3.678 27 O -0.327 6.327 28 H 0.098 0.902 29 H 0.092 0.908 30 H 0.103 0.897 31 H 0.104 0.896 32 H 0.086 0.914 33 H 0.099 0.901 34 H 0.284 0.716 35 H 0.145 0.855 36 H 0.143 0.857 37 H 0.233 0.767 38 H 0.101 0.899 39 H 0.083 0.917 40 H 0.077 0.923 41 H 0.042 0.958 42 H 0.085 0.915 43 H 0.072 0.928 44 H 0.045 0.955 45 H 0.096 0.904 46 H 0.079 0.921 47 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 4.184 26.131 -14.500 30.176 hybrid contribution 0.421 -0.624 -1.127 1.355 sum 4.605 25.508 -15.626 30.266 Atomic orbital electron populations 1.22022 0.89901 1.04462 1.04303 1.21459 0.97511 0.94044 0.84014 1.22013 1.02009 0.91872 1.04556 1.45690 1.54999 1.28908 1.08995 1.15833 0.79646 0.82063 0.81420 1.91026 1.48456 1.40905 1.60808 1.45822 1.49616 1.27312 1.07803 1.21516 0.95362 0.88058 0.97875 1.20635 0.88607 0.83816 0.78635 1.90724 1.19599 1.79247 1.51142 1.46176 1.16942 1.19955 1.53787 1.21034 0.91240 0.84372 0.98542 1.22378 0.99120 0.99427 0.97171 1.20889 0.91979 0.85053 0.99615 1.44409 1.44442 1.22968 1.21173 1.18931 1.43756 0.88139 0.87920 0.89611 1.25283 0.99613 0.96138 0.96572 1.69834 1.49499 1.07451 1.28322 0.86978 0.77667 0.78353 0.85845 1.21604 1.23098 1.19507 1.21304 0.91393 0.95651 0.91373 1.22351 0.98973 0.95380 1.01298 1.20791 0.76768 0.80229 0.90045 1.90813 1.55913 1.69378 1.16580 0.90200 0.90821 0.89698 0.89624 0.91372 0.90123 0.71582 0.85518 0.85667 0.76676 0.89887 0.91692 0.92325 0.95764 0.91525 0.92760 0.95485 0.90434 0.92128 0.91003 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.91 8.98 37.16 0.33 -0.57 16 2 C 0.12 0.83 1.37 -132.09 -0.18 0.65 16 3 C -0.15 -0.60 8.98 37.16 0.33 -0.26 16 4 N -0.72 -5.33 5.93 -52.84 -0.31 -5.64 16 5 C 0.71 8.12 8.63 -87.72 -0.76 7.37 16 6 O -0.54 -7.95 17.48 5.33 0.09 -7.86 16 7 N -0.56 -6.20 2.09 -121.93 -0.26 -6.45 16 8 C 0.10 0.97 6.18 -5.20 -0.03 0.94 16 9 C 0.50 6.91 7.86 -10.99 -0.09 6.82 16 10 O -0.53 -9.53 16.09 5.55 0.09 -9.44 16 11 N -0.72 -9.19 5.08 -53.77 -0.27 -9.46 16 12 C 0.15 2.46 2.42 -67.89 -0.16 2.30 16 13 C -0.14 -2.45 5.65 -26.61 -0.15 -2.60 16 14 C 0.15 3.08 6.52 -3.71 -0.02 3.06 16 15 N -0.61 -14.43 2.77 -172.32 -0.48 -14.91 16 16 C -0.26 -7.24 10.03 -15.06 -0.15 -7.39 16 17 H 0.09 2.55 8.06 -52.49 -0.42 2.13 16 18 C 0.02 0.66 5.23 -17.43 -0.09 0.57 16 19 N -0.91 -27.78 13.97 55.49 0.78 -27.01 16 20 Si 0.88 22.42 24.35 -169.99 -4.14 18.28 16 21 H -0.29 -7.01 6.62 56.52 0.37 -6.64 16 22 H -0.30 -7.85 7.11 56.52 0.40 -7.45 16 23 H -0.27 -6.82 6.64 56.52 0.38 -6.44 16 24 C 0.13 2.79 4.20 -3.71 -0.02 2.77 16 25 C -0.14 -2.36 5.55 -26.61 -0.15 -2.51 16 26 C 0.54 5.65 6.98 -10.56 -0.07 5.58 16 27 O -0.46 -5.88 17.76 5.59 0.10 -5.79 16 28 H 0.08 0.28 8.14 -51.92 -0.42 -0.14 16 29 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 30 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 31 H 0.08 0.34 8.14 -51.93 -0.42 -0.09 16 32 H 0.07 0.29 8.14 -51.93 -0.42 -0.13 16 33 H 0.08 0.17 8.14 -51.93 -0.42 -0.26 16 34 H 0.44 2.08 8.96 -40.82 -0.37 1.72 16 35 H 0.13 1.02 7.86 -51.93 -0.41 0.61 16 36 H 0.13 0.94 8.00 -51.93 -0.42 0.53 16 37 H 0.40 3.78 8.60 -40.82 -0.35 3.43 16 38 H 0.08 1.52 7.58 -51.93 -0.39 1.13 16 39 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 40 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 41 H 0.02 0.50 8.14 -51.93 -0.42 0.07 16 42 H 0.07 1.35 7.93 -51.93 -0.41 0.94 16 43 H 0.26 7.63 8.31 -40.82 -0.34 7.29 16 44 H 0.03 0.59 7.07 -51.93 -0.37 0.22 16 45 H 0.08 1.82 4.50 -51.93 -0.23 1.58 16 46 H 0.06 0.90 8.14 -51.93 -0.42 0.47 16 47 H 0.07 1.20 8.14 -51.93 -0.42 0.77 16 LS Contribution 380.89 15.07 5.74 5.74 Total: -1.00 -37.43 380.89 -7.08 -44.50 By element: Atomic # 1 Polarization: 8.52 SS G_CDS: -7.21 Total: 1.32 kcal Atomic # 6 Polarization: 17.93 SS G_CDS: -1.21 Total: 16.72 kcal Atomic # 7 Polarization: -62.93 SS G_CDS: -0.54 Total: -63.48 kcal Atomic # 8 Polarization: -23.36 SS G_CDS: 0.28 Total: -23.08 kcal Atomic # 14 Polarization: 22.42 SS G_CDS: -4.14 Total: 18.28 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -37.43 -7.08 -44.50 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001004094328.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.764 kcal (2) G-P(sol) polarization free energy of solvation -37.426 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.190 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.076 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.503 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.267 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds