Wall clock time and date at job start Tue Mar 31 2020 21:32:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52997 * 110.65647 * 2 1 4 4 C 1.51585 * 110.68881 * 237.13998 * 2 1 3 5 5 O 1.21230 * 127.15735 * 61.51198 * 4 2 1 6 6 N 1.34773 * 105.68140 * 241.76050 * 4 2 1 7 7 C 1.33786 * 111.64813 * 359.78266 * 6 4 2 8 8 O 1.21533 * 123.77181 * 179.97438 * 7 6 4 9 9 N 1.34532 * 112.45415 * 359.97438 * 7 6 4 10 10 C 1.46504 * 126.68592 * 179.97438 * 9 7 6 11 11 C 1.50705 * 109.46542 * 90.02691 * 10 9 7 12 12 O 1.21282 * 120.00278 * 359.97438 * 11 10 9 13 13 N 1.34779 * 119.99720 * 179.97438 * 11 10 9 14 14 C 1.46500 * 119.99785 * 179.97438 * 13 11 10 15 15 H 1.09004 * 109.52672 * 34.92225 * 14 13 11 16 16 C 1.53042 * 109.49765 * 155.00212 * 14 13 11 17 17 C 1.53040 * 109.54174 * 181.31850 * 16 14 13 18 18 C 1.53188 * 109.30921 * 298.63667 * 17 16 14 19 19 N 1.46926 * 108.77817 * 54.63345 * 18 17 16 20 20 C 1.36932 * 120.62923 * 126.37040 * 19 18 17 21 21 H 1.08003 * 120.00058 * 207.50814 * 20 19 18 22 22 C 1.38813 * 120.00216 * 27.51552 * 20 19 18 23 23 N 1.31614 * 120.00042 * 17.83429 * 22 20 19 24 24 Si 1.86803 * 119.99907 * 197.83738 * 22 20 19 25 25 H 1.48501 * 109.47098 * 265.35618 * 24 22 20 26 26 H 1.48493 * 109.47161 * 145.35673 * 24 22 20 27 27 H 1.48505 * 109.47060 * 25.35372 * 24 22 20 28 28 C 1.46930 * 118.73807 * 306.63893 * 19 18 17 29 29 H 1.09005 * 109.47045 * 297.08525 * 1 2 3 30 30 H 1.09002 * 109.47471 * 57.08403 * 1 2 3 31 31 H 1.08996 * 109.47196 * 177.08663 * 1 2 3 32 32 H 1.09002 * 109.46955 * 182.91484 * 3 2 1 33 33 H 1.08995 * 109.47418 * 302.91548 * 3 2 1 34 34 H 1.09008 * 109.47268 * 62.91528 * 3 2 1 35 35 H 0.97004 * 124.17301 * 179.81850 * 6 4 2 36 36 H 1.08998 * 109.47121 * 330.03027 * 10 9 7 37 37 H 1.09004 * 109.47040 * 210.02372 * 10 9 7 38 38 H 0.97000 * 120.00234 * 0.02562 * 13 11 10 39 39 H 1.09004 * 109.45919 * 61.29442 * 16 14 13 40 40 H 1.09004 * 109.46121 * 301.34047 * 16 14 13 41 41 H 1.09002 * 109.49979 * 178.68243 * 17 16 14 42 42 H 1.08998 * 109.49588 * 58.58319 * 17 16 14 43 43 H 1.09003 * 109.58681 * 294.84505 * 18 17 16 44 44 H 1.09001 * 109.70413 * 174.49134 * 18 17 16 45 45 H 0.97004 * 120.00090 * 180.02562 * 23 22 20 46 46 H 1.09000 * 109.58323 * 173.14513 * 28 19 18 47 47 H 1.08997 * 109.58717 * 293.57457 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0697 1.4316 0.0000 4 6 2.0655 -0.7694 -1.1912 5 8 1.8931 -0.5161 -2.3641 6 7 2.7686 -1.7969 -0.6750 7 6 2.7558 -1.7810 0.6627 8 8 3.3198 -2.6066 1.3536 9 7 2.0487 -0.7489 1.1576 10 6 1.8313 -0.4352 2.5720 11 6 2.9291 0.4752 3.0590 12 8 3.8069 0.8268 2.2996 13 7 2.9354 0.8986 4.3385 14 6 4.0029 1.7831 4.8121 15 1 4.2979 2.4599 4.0102 16 6 3.5002 2.5960 6.0074 17 6 4.6037 3.5440 6.4823 18 6 5.8173 2.7241 6.9313 19 7 6.2182 1.8329 5.8340 20 6 7.5070 1.8319 5.3716 21 1 7.7135 1.5537 4.3486 22 6 8.5483 2.1882 6.2176 23 7 8.3674 2.1855 7.5212 24 14 10.2064 2.6715 5.5057 25 1 11.0975 1.4840 5.4761 26 1 10.8184 3.7287 6.3501 27 1 10.0213 3.1860 4.1250 28 6 5.2084 0.9472 5.2385 29 1 -0.3633 0.4679 0.9150 30 1 -0.3634 0.5584 -0.8627 31 1 -0.3633 -1.0263 -0.0522 32 1 3.1583 1.4095 -0.0523 33 1 1.6754 1.9686 -0.8626 34 1 1.7601 1.9367 0.9150 35 1 3.2277 -2.4651 -1.2077 36 1 1.8387 -1.3568 3.1539 37 1 0.8682 0.0615 2.6901 38 1 2.2336 0.6171 4.9460 39 1 3.2286 1.9197 6.8180 40 1 2.6262 3.1758 5.7104 41 1 4.2371 4.1391 7.3187 42 1 4.8930 4.2041 5.6646 43 1 5.5536 2.1303 7.8065 44 1 6.6417 3.3930 7.1785 45 1 9.0949 2.4348 8.1124 46 1 5.6302 0.4460 4.3673 47 1 4.8940 0.2057 5.9728 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001009092545.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:32:32 Heat of formation + Delta-G solvation = -81.307424 kcal Electronic energy + Delta-G solvation = -30684.850471 eV Core-core repulsion = 26482.133593 eV Total energy + Delta-G solvation = -4202.716878 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -43.60929 -40.89699 -39.83639 -38.97334 -37.74959 -36.04370 -35.79940 -34.17300 -33.30188 -32.34353 -30.78044 -28.68939 -28.44937 -27.26766 -25.45292 -24.11105 -23.86219 -22.65485 -21.89178 -21.34835 -20.83917 -19.24289 -18.74424 -18.38540 -17.68224 -17.40003 -17.28768 -16.99958 -16.77478 -16.17430 -15.98868 -15.71454 -15.52153 -15.40362 -15.21912 -14.84994 -14.77710 -14.27133 -14.10929 -14.01731 -13.68045 -13.53941 -13.38473 -13.14688 -13.05741 -12.84195 -12.77381 -12.61101 -12.49737 -12.13509 -12.00031 -11.97406 -11.75160 -11.55749 -11.55218 -11.30273 -11.28359 -11.14437 -10.63176 -10.11603 -10.01110 -8.71092 -7.93581 -5.37816 0.46088 1.04874 1.40853 1.41888 1.53142 1.66310 1.83593 1.88232 2.32305 2.49789 2.85262 3.20335 3.50687 3.63451 3.76552 3.86565 3.89201 3.97539 4.15292 4.29326 4.31713 4.48458 4.50511 4.58674 4.60957 4.65796 4.75768 4.83186 4.85479 4.93593 4.95823 5.04470 5.10075 5.14799 5.19124 5.19984 5.27100 5.31271 5.48262 5.60017 5.62146 5.77338 5.88348 6.24180 6.34214 6.65735 6.95964 7.10774 7.37191 7.81379 8.29820 9.11977 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.015621 B = 0.002926 C = 0.002694 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1792.067764 B = 9568.490179 C =10392.867936 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.123 3.877 3 C -0.135 4.135 4 C 0.536 3.464 5 O -0.489 6.489 6 N -0.675 5.675 7 C 0.702 3.298 8 O -0.580 6.580 9 N -0.594 5.594 10 C 0.135 3.865 11 C 0.482 3.518 12 O -0.573 6.573 13 N -0.704 5.704 14 C 0.146 3.854 15 H 0.057 0.943 16 C -0.102 4.102 17 C -0.130 4.130 18 C 0.170 3.830 19 N -0.608 5.608 20 C -0.269 4.269 21 H 0.048 0.952 22 C -0.042 4.042 23 N -0.927 5.927 24 Si 0.963 3.037 25 H -0.286 1.286 26 H -0.282 1.282 27 H -0.277 1.277 28 C 0.144 3.856 29 H 0.108 0.892 30 H 0.094 0.906 31 H 0.073 0.927 32 H 0.039 0.961 33 H 0.094 0.906 34 H 0.085 0.915 35 H 0.437 0.563 36 H 0.134 0.866 37 H 0.175 0.825 38 H 0.420 0.580 39 H 0.076 0.924 40 H 0.094 0.906 41 H 0.085 0.915 42 H 0.046 0.954 43 H 0.004 0.996 44 H 0.053 0.947 45 H 0.253 0.747 46 H 0.020 0.980 47 H 0.018 0.982 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.394 -2.153 -10.397 27.524 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C 0.035 3.965 3 C -0.193 4.193 4 C 0.323 3.677 5 O -0.360 6.360 6 N -0.345 5.345 7 C 0.403 3.597 8 O -0.456 6.456 9 N -0.331 5.331 10 C 0.010 3.990 11 C 0.268 3.732 12 O -0.452 6.452 13 N -0.357 5.357 14 C 0.039 3.961 15 H 0.075 0.925 16 C -0.140 4.140 17 C -0.170 4.170 18 C 0.045 3.955 19 N -0.332 5.332 20 C -0.399 4.399 21 H 0.066 0.934 22 C -0.238 4.238 23 N -0.573 5.573 24 Si 0.790 3.210 25 H -0.213 1.213 26 H -0.207 1.207 27 H -0.202 1.202 28 C 0.017 3.983 29 H 0.126 0.874 30 H 0.113 0.887 31 H 0.092 0.908 32 H 0.058 0.942 33 H 0.112 0.888 34 H 0.104 0.896 35 H 0.280 0.720 36 H 0.152 0.848 37 H 0.192 0.808 38 H 0.257 0.743 39 H 0.094 0.906 40 H 0.112 0.888 41 H 0.103 0.897 42 H 0.065 0.935 43 H 0.022 0.978 44 H 0.071 0.929 45 H 0.062 0.938 46 H 0.039 0.961 47 H 0.036 0.964 Dipole moment (debyes) X Y Z Total from point charges -24.537 -2.064 -10.903 26.930 hybrid contribution 2.029 -0.559 -0.205 2.114 sum -22.508 -2.622 -11.108 25.236 Atomic orbital electron populations 1.22043 0.86577 1.04635 1.06402 1.21761 0.99283 0.93744 0.81722 1.21911 1.00824 0.91747 1.04810 1.21080 0.76452 0.80143 0.90042 1.90810 1.57992 1.69613 1.17557 1.44304 1.51400 1.30584 1.08190 1.16001 0.79200 0.82638 0.81860 1.91014 1.49504 1.43482 1.61575 1.47326 1.52775 1.26526 1.06447 1.21481 0.98667 1.01185 0.77625 1.21887 0.87770 0.81324 0.82226 1.90756 1.39872 1.58164 1.56375 1.45815 1.28566 1.50025 1.11339 1.21060 0.87011 0.91411 0.96578 0.92511 1.21601 0.98216 0.98002 0.96169 1.22008 0.96011 0.98032 1.00904 1.20740 0.95075 0.91639 0.88061 1.44220 1.05646 1.43056 1.40259 1.19353 0.84335 1.42529 0.93717 0.93390 1.25672 1.00726 1.02097 0.95342 1.70164 1.32879 1.52047 1.02214 0.85348 0.80048 0.77773 0.77819 1.21267 1.20726 1.20178 1.21144 0.90179 0.92108 0.94857 0.87352 0.88744 0.90847 0.94175 0.88766 0.89567 0.72009 0.84801 0.80823 0.74275 0.90553 0.88753 0.89670 0.93508 0.97776 0.92898 0.93800 0.96113 0.96396 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.89 8.80 71.98 0.63 -0.26 16 2 C 0.12 1.85 1.14 2.98 0.00 1.86 16 3 C -0.13 -2.30 7.58 71.98 0.55 -1.75 16 4 C 0.54 10.64 7.48 87.94 0.66 11.29 16 5 O -0.49 -11.64 18.02 -2.87 -0.05 -11.70 16 6 N -0.68 -13.93 5.70 -441.12 -2.52 -16.45 16 7 C 0.70 17.57 8.68 179.44 1.56 19.12 16 8 O -0.58 -19.25 17.71 -3.82 -0.07 -19.32 16 9 N -0.59 -10.94 1.99 -798.94 -1.59 -12.53 16 10 C 0.13 1.82 6.33 85.63 0.54 2.36 16 11 C 0.48 11.69 7.46 87.66 0.65 12.34 16 12 O -0.57 -20.52 14.40 -3.04 -0.04 -20.56 16 13 N -0.70 -15.44 5.08 -442.83 -2.25 -17.69 16 14 C 0.15 4.74 2.59 44.93 0.12 4.86 16 15 H 0.06 2.21 7.58 -2.38 -0.02 2.20 16 16 C -0.10 -2.69 5.36 30.62 0.16 -2.53 16 17 C -0.13 -4.44 6.08 30.67 0.19 -4.26 16 18 C 0.17 8.06 5.32 86.36 0.46 8.52 16 19 N -0.61 -31.93 3.00 -699.92 -2.10 -34.03 16 20 C -0.27 -15.95 9.58 84.03 0.81 -15.15 16 21 H 0.05 2.94 7.89 -2.91 -0.02 2.92 16 22 C -0.04 -2.47 4.90 84.86 0.42 -2.05 16 23 N -0.93 -55.66 11.20 21.65 0.24 -55.42 16 24 Si 0.96 47.02 29.59 68.60 2.03 49.05 16 25 H -0.29 -13.82 7.11 99.48 0.71 -13.12 16 26 H -0.28 -13.32 7.11 99.48 0.71 -12.62 16 27 H -0.28 -13.30 7.11 99.48 0.71 -12.59 16 28 C 0.14 6.39 6.06 86.22 0.52 6.91 16 29 H 0.11 0.11 7.43 -2.38 -0.02 0.09 16 30 H 0.09 0.52 8.14 -2.39 -0.02 0.50 16 31 H 0.07 0.45 8.14 -2.39 -0.02 0.43 16 32 H 0.04 1.01 7.55 -2.39 -0.02 0.99 16 33 H 0.09 1.27 8.14 -2.39 -0.02 1.25 16 34 H 0.09 1.28 7.90 -2.38 -0.02 1.27 16 35 H 0.44 7.53 8.96 -92.70 -0.83 6.70 16 36 H 0.13 1.58 8.03 -2.39 -0.02 1.56 16 37 H 0.17 0.33 7.36 -2.38 -0.02 0.31 16 38 H 0.42 5.27 8.60 -92.71 -0.80 4.47 16 39 H 0.08 1.83 8.14 -2.38 -0.02 1.81 16 40 H 0.09 1.81 8.14 -2.39 -0.02 1.79 16 41 H 0.08 2.42 8.14 -2.39 -0.02 2.40 16 42 H 0.05 1.70 8.14 -2.39 -0.02 1.68 16 43 H 0.00 0.20 8.14 -2.39 -0.02 0.19 16 44 H 0.05 2.87 6.03 -2.39 -0.01 2.86 16 45 H 0.25 14.55 8.31 -92.71 -0.77 13.78 16 46 H 0.02 1.03 7.93 -2.39 -0.02 1.01 16 47 H 0.02 0.79 8.14 -2.39 -0.02 0.77 16 Total: -1.00 -87.05 382.23 0.30 -86.76 By element: Atomic # 1 Polarization: 11.25 SS G_CDS: -0.62 Total: 10.63 kcal Atomic # 6 Polarization: 34.00 SS G_CDS: 7.26 Total: 41.27 kcal Atomic # 7 Polarization: -127.91 SS G_CDS: -8.21 Total: -136.12 kcal Atomic # 8 Polarization: -51.41 SS G_CDS: -0.16 Total: -51.57 kcal Atomic # 14 Polarization: 47.02 SS G_CDS: 2.03 Total: 49.05 kcal Total: -87.05 0.30 -86.76 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001009092545.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.450 kcal (2) G-P(sol) polarization free energy of solvation -87.054 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.604 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.297 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.758 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.307 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds