Wall clock time and date at job start Tue Mar 31 2020 21:32:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53005 * 110.53695 * 2 1 4 4 N 1.47319 * 110.59836 * 122.82776 * 2 1 3 5 5 C 1.34527 * 106.61905 * 118.52898 * 4 2 1 6 6 O 1.21530 * 123.77178 * 180.02562 * 5 4 2 7 7 N 1.33793 * 112.45444 * 359.97438 * 5 4 2 8 8 C 1.46498 * 124.17634 * 179.97438 * 7 5 4 9 9 C 1.50699 * 109.47123 * 90.02313 * 8 7 5 10 10 O 1.21285 * 120.00047 * 359.72716 * 9 8 7 11 11 N 1.34783 * 119.99888 * 180.02562 * 9 8 7 12 12 C 1.46501 * 119.99816 * 179.72462 * 11 9 8 13 13 H 1.09008 * 109.49852 * 34.93684 * 12 11 9 14 14 C 1.53043 * 109.49846 * 154.99822 * 12 11 9 15 15 C 1.53038 * 109.53867 * 181.31698 * 14 12 11 16 16 C 1.53189 * 109.31230 * 298.63536 * 15 14 12 17 17 N 1.46924 * 108.77631 * 54.63549 * 16 15 14 18 18 C 1.36945 * 120.63022 * 126.36862 * 17 16 15 19 19 H 1.07998 * 119.99976 * 207.68889 * 18 17 16 20 20 C 1.38809 * 119.99865 * 27.68542 * 18 17 16 21 21 N 1.31620 * 120.00109 * 17.36797 * 20 18 17 22 22 Si 1.86801 * 120.00082 * 197.36281 * 20 18 17 23 23 H 1.48491 * 109.47095 * 90.00042 * 22 20 18 24 24 H 1.48502 * 109.47090 * 210.00462 * 22 20 18 25 25 H 1.48503 * 109.46990 * 330.00374 * 22 20 18 26 26 C 1.46925 * 118.73938 * 306.39271 * 17 16 15 27 27 C 1.34765 * 111.64605 * 0.23053 * 7 5 4 28 28 O 1.21239 * 127.15419 * 179.73465 * 27 7 5 29 29 H 1.09001 * 109.46970 * 298.62823 * 1 2 3 30 30 H 1.09003 * 109.46835 * 58.61969 * 1 2 3 31 31 H 1.08989 * 109.47200 * 178.62508 * 1 2 3 32 32 H 1.08994 * 109.47317 * 181.37248 * 3 2 1 33 33 H 1.08997 * 109.46870 * 301.37840 * 3 2 1 34 34 H 1.09002 * 109.46926 * 61.37537 * 3 2 1 35 35 H 0.97001 * 126.69107 * 298.49527 * 4 2 1 36 36 H 1.08998 * 109.47067 * 330.02630 * 8 7 5 37 37 H 1.08998 * 109.47640 * 210.02486 * 8 7 5 38 38 H 0.96996 * 119.99875 * 359.72554 * 11 9 8 39 39 H 1.09003 * 109.45859 * 301.34127 * 14 12 11 40 40 H 1.09002 * 109.45505 * 61.29272 * 14 12 11 41 41 H 1.08997 * 109.50144 * 58.58622 * 15 14 12 42 42 H 1.08999 * 109.49628 * 178.68652 * 15 14 12 43 43 H 1.09002 * 109.58582 * 174.42512 * 16 15 14 44 44 H 1.09001 * 109.58974 * 294.70205 * 16 15 14 45 45 H 0.96998 * 120.00297 * 179.97438 * 21 20 18 46 46 H 1.09003 * 109.58526 * 293.81569 * 26 17 16 47 47 H 1.09005 * 109.58563 * 173.39635 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0668 1.4328 0.0000 4 7 2.0483 -0.7476 1.1588 5 6 2.7600 -1.7771 0.6654 6 8 3.3284 -2.5986 1.3575 7 7 2.7711 -1.7961 -0.6723 8 6 3.4680 -2.8040 -1.4752 9 6 2.5388 -3.9583 -1.7493 10 8 1.4075 -3.9431 -1.3123 11 7 2.9669 -5.0104 -2.4749 12 6 2.0654 -6.1353 -2.7362 13 1 1.0471 -5.7653 -2.8562 14 6 2.5020 -6.8533 -4.0153 15 6 1.5416 -8.0085 -4.3070 16 6 1.5887 -9.0111 -3.1497 17 7 1.3118 -8.2984 -1.8951 18 6 0.3204 -8.7271 -1.0532 19 1 -0.1825 -8.0221 -0.4080 20 6 -0.0380 -10.0679 -1.0292 21 7 0.7703 -10.9744 -1.5363 22 14 -1.6677 -10.5857 -0.2772 23 1 -2.7204 -10.5792 -1.3245 24 1 -1.5399 -11.9531 0.2878 25 1 -2.0382 -9.6364 0.8030 26 6 2.1184 -7.1166 -1.5611 27 6 2.0667 -0.7704 -1.1899 28 8 1.8967 -0.5172 -2.3633 29 1 -0.3633 0.4924 0.9020 30 1 -0.3633 0.5351 -0.8774 31 1 -0.3633 -1.0273 -0.0247 32 1 3.1562 1.4127 -0.0246 33 1 1.6931 1.9607 -0.8774 34 1 1.7332 1.9457 0.9021 35 1 1.9048 -0.5380 2.0950 36 1 4.3415 -3.1621 -0.9304 37 1 3.7852 -2.3609 -2.4192 38 1 3.8717 -5.0227 -2.8241 39 1 2.4888 -6.1508 -4.8486 40 1 3.5114 -7.2439 -3.8859 41 1 0.5281 -7.6215 -4.4120 42 1 1.8395 -8.5049 -5.2306 43 1 0.8357 -9.7838 -3.3048 44 1 2.5770 -9.4683 -3.1022 45 1 0.5200 -11.9114 -1.5193 46 1 3.1508 -7.4175 -1.3824 47 1 1.7150 -6.6394 -0.6679 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001009419191.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:32:41 Heat of formation + Delta-G solvation = -53.840759 kcal Electronic energy + Delta-G solvation = -30496.061847 eV Core-core repulsion = 26294.536013 eV Total energy + Delta-G solvation = -4201.525834 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -42.80105 -39.64238 -38.82407 -37.43820 -36.78311 -35.37112 -34.32307 -32.47104 -31.80153 -30.45155 -29.73624 -27.97505 -27.85770 -25.26307 -24.48813 -22.88548 -22.10653 -21.75960 -20.83657 -20.17778 -19.34006 -18.22007 -17.65235 -16.83381 -16.62249 -16.21042 -16.05965 -15.95042 -15.21202 -15.03051 -14.76037 -14.61105 -14.36640 -14.07692 -13.87195 -13.49431 -13.44708 -13.14871 -13.09503 -12.73133 -12.69977 -12.48819 -12.39194 -12.24977 -12.02690 -11.82330 -11.08374 -11.02495 -10.88700 -10.78857 -10.57996 -10.37640 -10.24462 -10.19973 -9.89465 -9.88502 -9.79082 -9.62654 -9.39282 -8.85109 -8.38407 -6.65205 -5.75621 -3.17635 1.39917 1.83376 2.67384 2.75980 2.82523 3.36025 3.42433 3.48639 3.51689 3.60194 4.11506 4.33178 4.53478 4.64253 4.70729 4.90587 5.00153 5.06916 5.10557 5.19625 5.23382 5.30314 5.39983 5.44775 5.48897 5.55233 5.63513 5.71143 5.72480 6.08543 6.15461 6.24996 6.52173 6.52815 6.62093 6.65929 6.70381 6.78417 6.85367 6.99962 7.11054 7.37509 7.64202 7.66817 7.86213 7.91629 8.32616 8.49043 9.25131 9.87235 10.42738 11.33182 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.015512 B = 0.002887 C = 0.002654 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1804.668271 B = 9694.672462 C =10547.652118 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.120 3.880 3 C -0.145 4.145 4 N -0.720 5.720 5 C 0.709 3.291 6 O -0.535 6.535 7 N -0.559 5.559 8 C 0.098 3.902 9 C 0.498 3.502 10 O -0.526 6.526 11 N -0.716 5.716 12 C 0.127 3.873 13 H 0.086 0.914 14 C -0.114 4.114 15 C -0.139 4.139 16 C 0.167 3.833 17 N -0.588 5.588 18 C -0.250 4.250 19 H 0.066 0.934 20 C 0.002 3.998 21 N -0.904 5.904 22 Si 0.903 3.097 23 H -0.287 1.287 24 H -0.291 1.291 25 H -0.278 1.278 26 C 0.143 3.857 27 C 0.536 3.464 28 O -0.463 6.463 29 H 0.079 0.921 30 H 0.083 0.917 31 H 0.074 0.926 32 H 0.067 0.933 33 H 0.084 0.916 34 H 0.079 0.921 35 H 0.439 0.561 36 H 0.127 0.873 37 H 0.123 0.877 38 H 0.396 0.604 39 H 0.051 0.949 40 H 0.060 0.940 41 H 0.057 0.943 42 H 0.055 0.945 43 H 0.089 0.911 44 H 0.019 0.981 45 H 0.253 0.747 46 H 0.018 0.982 47 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.584 24.932 -0.980 25.806 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.030 3.970 3 C -0.204 4.204 4 N -0.385 5.385 5 C 0.409 3.591 6 O -0.408 6.408 7 N -0.305 5.305 8 C -0.027 4.027 9 C 0.281 3.719 10 O -0.401 6.401 11 N -0.368 5.368 12 C 0.021 3.979 13 H 0.104 0.896 14 C -0.152 4.152 15 C -0.179 4.179 16 C 0.041 3.959 17 N -0.310 5.310 18 C -0.379 4.379 19 H 0.084 0.916 20 C -0.196 4.196 21 N -0.549 5.549 22 Si 0.733 3.267 23 H -0.214 1.214 24 H -0.218 1.218 25 H -0.204 1.204 26 C 0.015 3.985 27 C 0.323 3.677 28 O -0.332 6.332 29 H 0.098 0.902 30 H 0.102 0.898 31 H 0.093 0.907 32 H 0.086 0.914 33 H 0.103 0.897 34 H 0.098 0.902 35 H 0.284 0.716 36 H 0.145 0.855 37 H 0.141 0.859 38 H 0.230 0.770 39 H 0.070 0.930 40 H 0.079 0.921 41 H 0.076 0.924 42 H 0.073 0.927 43 H 0.108 0.892 44 H 0.037 0.963 45 H 0.063 0.937 46 H 0.036 0.964 47 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 5.980 24.367 -0.986 25.109 hybrid contribution -0.377 -0.389 0.592 0.802 sum 5.603 23.978 -0.394 24.628 Atomic orbital electron populations 1.22013 0.89922 1.04577 1.04165 1.21455 0.97497 0.93983 0.84072 1.22002 1.01971 0.91947 1.04448 1.45618 1.54916 1.28997 1.09008 1.15759 0.79777 0.82091 0.81443 1.91043 1.48372 1.40813 1.60523 1.45815 1.49705 1.27100 1.07881 1.21505 0.95455 0.88016 0.97765 1.20600 0.88618 0.83717 0.78977 1.90754 1.19721 1.79687 1.49934 1.46030 1.16978 1.19475 1.54297 1.21787 0.93666 0.85369 0.97040 0.89624 1.21678 1.00067 0.97803 0.95685 1.22179 0.98479 0.97162 1.00106 1.20844 1.00000 0.92602 0.82453 1.44004 1.38202 1.28988 1.19841 1.19239 1.09483 0.91283 1.17913 0.91578 1.25015 0.98739 0.95692 1.00180 1.70040 1.34659 1.00305 1.49888 0.86263 0.83919 0.77589 0.78912 1.21410 1.21760 1.20377 1.21175 0.94590 0.88135 0.94597 1.20774 0.76718 0.80260 0.89982 1.90792 1.56182 1.69651 1.16530 0.90212 0.89798 0.90733 0.91427 0.89701 0.90161 0.71621 0.85500 0.85890 0.77011 0.93037 0.92138 0.92448 0.92661 0.89248 0.96266 0.93668 0.96376 0.92453 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.08 8.99 37.16 0.33 -0.75 16 2 C 0.12 0.97 1.37 -132.09 -0.18 0.79 16 3 C -0.15 -0.71 8.98 37.16 0.33 -0.38 16 4 N -0.72 -6.33 5.90 -52.93 -0.31 -6.64 16 5 C 0.71 9.21 8.62 -88.02 -0.76 8.45 16 6 O -0.54 -8.87 17.48 5.34 0.09 -8.78 16 7 N -0.56 -6.92 2.09 -122.03 -0.26 -7.17 16 8 C 0.10 1.10 6.18 -5.20 -0.03 1.07 16 9 C 0.50 7.76 7.87 -10.98 -0.09 7.67 16 10 O -0.53 -10.70 16.09 5.55 0.09 -10.61 16 11 N -0.72 -10.24 5.08 -53.68 -0.27 -10.51 16 12 C 0.13 2.31 2.60 -67.81 -0.18 2.14 16 13 H 0.09 1.81 7.58 -51.92 -0.39 1.42 16 14 C -0.11 -1.85 5.35 -26.69 -0.14 -1.99 16 15 C -0.14 -2.63 6.08 -26.61 -0.16 -2.79 16 16 C 0.17 4.00 5.31 -3.71 -0.02 3.98 16 17 N -0.59 -15.31 3.00 -172.32 -0.52 -15.82 16 18 C -0.25 -7.20 9.59 -15.06 -0.14 -7.34 16 19 H 0.07 1.93 7.89 -52.49 -0.41 1.52 16 20 C 0.00 0.06 4.91 -17.43 -0.09 -0.03 16 21 N -0.90 -26.71 11.19 55.49 0.62 -26.09 16 22 Si 0.90 22.51 29.59 -169.99 -5.03 17.48 16 23 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 24 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 25 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 26 C 0.14 3.21 6.09 -3.71 -0.02 3.19 16 27 C 0.54 6.20 6.99 -10.56 -0.07 6.13 16 28 O -0.46 -6.26 17.75 5.59 0.10 -6.17 16 29 H 0.08 0.38 8.14 -51.93 -0.42 -0.04 16 30 H 0.08 0.56 8.14 -51.93 -0.42 0.13 16 31 H 0.07 0.74 8.14 -51.94 -0.42 0.32 16 32 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 33 H 0.08 0.39 8.14 -51.93 -0.42 -0.04 16 34 H 0.08 0.23 8.14 -51.93 -0.42 -0.19 16 35 H 0.44 2.72 8.96 -40.82 -0.37 2.35 16 36 H 0.13 1.19 7.86 -51.93 -0.41 0.78 16 37 H 0.12 1.01 8.00 -51.93 -0.42 0.59 16 38 H 0.40 4.09 8.60 -40.82 -0.35 3.74 16 39 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 40 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 41 H 0.06 1.13 8.14 -51.93 -0.42 0.70 16 42 H 0.05 0.91 8.14 -51.93 -0.42 0.49 16 43 H 0.09 2.40 6.03 -51.93 -0.31 2.09 16 44 H 0.02 0.48 8.14 -51.93 -0.42 0.05 16 45 H 0.25 7.21 8.31 -40.82 -0.34 6.87 16 46 H 0.02 0.41 8.14 -51.93 -0.42 -0.02 16 47 H 0.06 1.41 7.93 -51.93 -0.41 1.00 16 LS Contribution 387.31 15.07 5.84 5.84 Total: -1.00 -37.72 387.31 -8.15 -45.87 By element: Atomic # 1 Polarization: 9.77 SS G_CDS: -7.28 Total: 2.49 kcal Atomic # 6 Polarization: 21.35 SS G_CDS: -1.22 Total: 20.13 kcal Atomic # 7 Polarization: -65.51 SS G_CDS: -0.74 Total: -66.25 kcal Atomic # 8 Polarization: -25.83 SS G_CDS: 0.28 Total: -25.55 kcal Atomic # 14 Polarization: 22.51 SS G_CDS: -5.03 Total: 17.48 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -37.72 -8.15 -45.87 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001009419191.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.973 kcal (2) G-P(sol) polarization free energy of solvation -37.721 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.694 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.147 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.868 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.841 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds