Wall clock time and date at job start Tue Mar 31 2020 21:32:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53005 * 110.53695 * 2 1 4 4 N 1.47319 * 110.59836 * 122.82776 * 2 1 3 5 5 C 1.34527 * 106.61905 * 118.52898 * 4 2 1 6 6 O 1.21530 * 123.77178 * 180.02562 * 5 4 2 7 7 N 1.33793 * 112.45444 * 359.97438 * 5 4 2 8 8 C 1.46498 * 124.17634 * 179.97438 * 7 5 4 9 9 C 1.50699 * 109.47123 * 90.02313 * 8 7 5 10 10 O 1.21285 * 120.00047 * 359.72716 * 9 8 7 11 11 N 1.34783 * 119.99888 * 180.02562 * 9 8 7 12 12 C 1.46501 * 119.99816 * 179.72462 * 11 9 8 13 13 H 1.09008 * 109.49852 * 34.93684 * 12 11 9 14 14 C 1.53043 * 109.49846 * 154.99822 * 12 11 9 15 15 C 1.53038 * 109.53867 * 181.31698 * 14 12 11 16 16 C 1.53189 * 109.31230 * 298.63536 * 15 14 12 17 17 N 1.46924 * 108.77631 * 54.63549 * 16 15 14 18 18 C 1.36945 * 120.63022 * 126.36862 * 17 16 15 19 19 H 1.07998 * 119.99976 * 207.68889 * 18 17 16 20 20 C 1.38809 * 119.99865 * 27.68542 * 18 17 16 21 21 N 1.31620 * 120.00109 * 17.36797 * 20 18 17 22 22 Si 1.86801 * 120.00082 * 197.36281 * 20 18 17 23 23 H 1.48491 * 109.47095 * 90.00042 * 22 20 18 24 24 H 1.48502 * 109.47090 * 210.00462 * 22 20 18 25 25 H 1.48503 * 109.46990 * 330.00374 * 22 20 18 26 26 C 1.46925 * 118.73938 * 306.39271 * 17 16 15 27 27 C 1.34765 * 111.64605 * 0.23053 * 7 5 4 28 28 O 1.21239 * 127.15419 * 179.73465 * 27 7 5 29 29 H 1.09001 * 109.46970 * 298.62823 * 1 2 3 30 30 H 1.09003 * 109.46835 * 58.61969 * 1 2 3 31 31 H 1.08989 * 109.47200 * 178.62508 * 1 2 3 32 32 H 1.08994 * 109.47317 * 181.37248 * 3 2 1 33 33 H 1.08997 * 109.46870 * 301.37840 * 3 2 1 34 34 H 1.09002 * 109.46926 * 61.37537 * 3 2 1 35 35 H 0.97001 * 126.69107 * 298.49527 * 4 2 1 36 36 H 1.08998 * 109.47067 * 330.02630 * 8 7 5 37 37 H 1.08998 * 109.47640 * 210.02486 * 8 7 5 38 38 H 0.96996 * 119.99875 * 359.72554 * 11 9 8 39 39 H 1.09003 * 109.45859 * 301.34127 * 14 12 11 40 40 H 1.09002 * 109.45505 * 61.29272 * 14 12 11 41 41 H 1.08997 * 109.50144 * 58.58622 * 15 14 12 42 42 H 1.08999 * 109.49628 * 178.68652 * 15 14 12 43 43 H 1.09002 * 109.58582 * 174.42512 * 16 15 14 44 44 H 1.09001 * 109.58974 * 294.70205 * 16 15 14 45 45 H 0.96998 * 120.00297 * 179.97438 * 21 20 18 46 46 H 1.09003 * 109.58526 * 293.81569 * 26 17 16 47 47 H 1.09005 * 109.58563 * 173.39635 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0668 1.4328 0.0000 4 7 2.0483 -0.7476 1.1588 5 6 2.7600 -1.7771 0.6654 6 8 3.3284 -2.5986 1.3575 7 7 2.7711 -1.7961 -0.6723 8 6 3.4680 -2.8040 -1.4752 9 6 2.5388 -3.9583 -1.7493 10 8 1.4075 -3.9431 -1.3123 11 7 2.9669 -5.0104 -2.4749 12 6 2.0654 -6.1353 -2.7362 13 1 1.0471 -5.7653 -2.8562 14 6 2.5020 -6.8533 -4.0153 15 6 1.5416 -8.0085 -4.3070 16 6 1.5887 -9.0111 -3.1497 17 7 1.3118 -8.2984 -1.8951 18 6 0.3204 -8.7271 -1.0532 19 1 -0.1825 -8.0221 -0.4080 20 6 -0.0380 -10.0679 -1.0292 21 7 0.7703 -10.9744 -1.5363 22 14 -1.6677 -10.5857 -0.2772 23 1 -2.7204 -10.5792 -1.3245 24 1 -1.5399 -11.9531 0.2878 25 1 -2.0382 -9.6364 0.8030 26 6 2.1184 -7.1166 -1.5611 27 6 2.0667 -0.7704 -1.1899 28 8 1.8967 -0.5172 -2.3633 29 1 -0.3633 0.4924 0.9020 30 1 -0.3633 0.5351 -0.8774 31 1 -0.3633 -1.0273 -0.0247 32 1 3.1562 1.4127 -0.0246 33 1 1.6931 1.9607 -0.8774 34 1 1.7332 1.9457 0.9021 35 1 1.9048 -0.5380 2.0950 36 1 4.3415 -3.1621 -0.9304 37 1 3.7852 -2.3609 -2.4192 38 1 3.8717 -5.0227 -2.8241 39 1 2.4888 -6.1508 -4.8486 40 1 3.5114 -7.2439 -3.8859 41 1 0.5281 -7.6215 -4.4120 42 1 1.8395 -8.5049 -5.2306 43 1 0.8357 -9.7838 -3.3048 44 1 2.5770 -9.4683 -3.1022 45 1 0.5200 -11.9114 -1.5193 46 1 3.1508 -7.4175 -1.3824 47 1 1.7150 -6.6394 -0.6679 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001009419191.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:32:41 Heat of formation + Delta-G solvation = -83.423064 kcal Electronic energy + Delta-G solvation = -30497.344632 eV Core-core repulsion = 26294.536013 eV Total energy + Delta-G solvation = -4202.808619 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -43.68959 -40.98223 -39.81056 -39.05020 -37.71942 -36.38224 -35.95267 -34.22855 -32.54661 -32.37867 -31.10071 -29.14813 -28.45751 -27.29757 -25.37020 -24.19577 -23.90025 -22.94211 -21.84624 -21.42020 -20.91590 -19.13380 -18.82670 -18.69221 -17.71060 -17.28189 -17.21678 -16.86805 -16.76819 -16.32994 -16.24486 -15.75429 -15.46792 -15.34078 -15.32461 -15.04509 -14.87550 -14.30321 -14.19861 -14.07620 -13.67615 -13.45367 -13.40807 -13.27391 -13.15380 -13.06729 -12.78819 -12.60232 -12.59191 -12.16541 -12.02221 -12.00924 -11.86471 -11.68199 -11.57226 -11.35636 -11.26194 -10.77016 -10.65505 -10.51513 -10.19876 -8.74024 -7.94572 -5.40290 0.49639 0.95225 1.41002 1.42227 1.45809 1.52164 1.75818 2.07285 2.21182 2.47492 2.80967 3.18985 3.49328 3.53645 3.73381 3.75765 3.84808 3.87219 4.07962 4.09876 4.20991 4.26310 4.42521 4.44807 4.53527 4.58655 4.64507 4.73357 4.77344 4.84634 4.88816 4.98493 5.08155 5.09467 5.10867 5.18797 5.24587 5.41219 5.51112 5.59198 5.73614 5.75635 5.88894 6.23821 6.32656 6.47047 7.01281 7.08720 7.16538 7.78133 8.27777 9.11054 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.015512 B = 0.002887 C = 0.002654 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1804.668271 B = 9694.672462 C =10547.652118 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.125 3.875 3 C -0.139 4.139 4 N -0.702 5.702 5 C 0.701 3.299 6 O -0.580 6.580 7 N -0.567 5.567 8 C 0.100 3.900 9 C 0.491 3.509 10 O -0.580 6.580 11 N -0.700 5.700 12 C 0.143 3.857 13 H 0.054 0.946 14 C -0.103 4.103 15 C -0.130 4.130 16 C 0.170 3.830 17 N -0.608 5.608 18 C -0.271 4.271 19 H 0.049 0.951 20 C -0.043 4.043 21 N -0.928 5.928 22 Si 0.966 3.034 23 H -0.280 1.280 24 H -0.286 1.286 25 H -0.277 1.277 26 C 0.146 3.854 27 C 0.528 3.472 28 O -0.486 6.486 29 H 0.111 0.889 30 H 0.092 0.908 31 H 0.041 0.959 32 H 0.067 0.933 33 H 0.092 0.908 34 H 0.108 0.892 35 H 0.452 0.548 36 H 0.148 0.852 37 H 0.160 0.840 38 H 0.421 0.579 39 H 0.089 0.911 40 H 0.079 0.921 41 H 0.045 0.955 42 H 0.087 0.913 43 H 0.055 0.945 44 H 0.007 0.993 45 H 0.254 0.746 46 H 0.023 0.977 47 H 0.022 0.978 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.368 27.341 -1.881 28.379 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.035 3.965 3 C -0.196 4.196 4 N -0.367 5.367 5 C 0.402 3.598 6 O -0.456 6.456 7 N -0.311 5.311 8 C -0.025 4.025 9 C 0.277 3.723 10 O -0.460 6.460 11 N -0.353 5.353 12 C 0.036 3.964 13 H 0.072 0.928 14 C -0.141 4.141 15 C -0.169 4.169 16 C 0.045 3.955 17 N -0.331 5.331 18 C -0.401 4.401 19 H 0.067 0.933 20 C -0.239 4.239 21 N -0.573 5.573 22 Si 0.794 3.206 23 H -0.206 1.206 24 H -0.212 1.212 25 H -0.202 1.202 26 C 0.019 3.981 27 C 0.316 3.684 28 O -0.356 6.356 29 H 0.130 0.870 30 H 0.111 0.889 31 H 0.060 0.940 32 H 0.086 0.914 33 H 0.111 0.889 34 H 0.126 0.874 35 H 0.299 0.701 36 H 0.165 0.835 37 H 0.177 0.823 38 H 0.259 0.741 39 H 0.108 0.892 40 H 0.098 0.902 41 H 0.064 0.936 42 H 0.105 0.895 43 H 0.073 0.927 44 H 0.025 0.975 45 H 0.063 0.937 46 H 0.040 0.960 47 H 0.040 0.960 Dipole moment (debyes) X Y Z Total from point charges 6.800 26.838 -1.909 27.752 hybrid contribution -0.621 -1.124 0.905 1.571 sum 6.179 25.714 -1.004 26.465 Atomic orbital electron populations 1.22047 0.89151 1.02989 1.06253 1.21671 0.97866 0.95108 0.81880 1.22037 1.01973 0.89381 1.06256 1.45608 1.53315 1.27723 1.10037 1.16012 0.79885 0.82402 0.81547 1.91007 1.50515 1.42653 1.61415 1.45981 1.49889 1.27379 1.07898 1.21694 0.94477 0.86539 0.99757 1.21458 0.88497 0.84665 0.77708 1.90734 1.22374 1.80897 1.51962 1.45766 1.17601 1.18003 1.53933 1.21261 0.93320 0.85480 0.96340 0.92785 1.21612 0.99950 0.97202 0.95316 1.22019 0.98964 0.96962 0.98992 1.20741 0.97925 0.93205 0.83592 1.44231 1.38346 1.30080 1.20491 1.19369 1.10666 0.91474 1.18581 0.93332 1.25722 1.01739 0.95466 1.00932 1.70163 1.36007 1.00368 1.50772 0.85294 0.80027 0.77087 0.78207 1.20639 1.21222 1.20230 1.21187 0.93712 0.87857 0.95315 1.21418 0.76140 0.80191 0.90656 1.90770 1.56928 1.70283 1.17624 0.87044 0.88913 0.94017 0.91350 0.88918 0.87360 0.70115 0.83452 0.82276 0.74137 0.89201 0.90193 0.93601 0.89451 0.92683 0.97493 0.93732 0.95959 0.95970 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.91 8.99 71.98 0.65 -1.27 16 2 C 0.12 1.79 1.37 2.98 0.00 1.79 16 3 C -0.14 -0.93 8.98 71.98 0.65 -0.28 16 4 N -0.70 -11.53 5.90 -439.81 -2.60 -14.12 16 5 C 0.70 18.09 8.62 179.44 1.55 19.64 16 6 O -0.58 -19.55 17.48 -3.81 -0.07 -19.62 16 7 N -0.57 -13.66 2.09 -777.24 -1.63 -15.29 16 8 C 0.10 2.12 6.18 85.63 0.53 2.65 16 9 C 0.49 15.24 7.87 87.66 0.69 15.93 16 10 O -0.58 -24.57 16.09 -3.04 -0.05 -24.62 16 11 N -0.70 -19.16 5.08 -442.14 -2.25 -21.41 16 12 C 0.14 5.18 2.60 45.07 0.12 5.30 16 13 H 0.05 2.34 7.58 -2.38 -0.02 2.33 16 14 C -0.10 -3.06 5.35 30.62 0.16 -2.89 16 15 C -0.13 -4.73 6.08 30.67 0.19 -4.54 16 16 C 0.17 8.33 5.31 86.36 0.46 8.78 16 17 N -0.61 -32.83 3.00 -699.10 -2.09 -34.93 16 18 C -0.27 -16.31 9.59 84.03 0.81 -15.50 16 19 H 0.05 3.02 7.89 -2.91 -0.02 3.00 16 20 C -0.04 -2.50 4.91 84.86 0.42 -2.09 16 21 N -0.93 -56.22 11.19 21.65 0.24 -55.98 16 22 Si 0.97 47.42 29.59 68.60 2.03 49.45 16 23 H -0.28 -13.35 7.11 99.48 0.71 -12.64 16 24 H -0.29 -13.74 7.11 99.48 0.71 -13.03 16 25 H -0.28 -13.41 7.11 99.48 0.71 -12.71 16 26 C 0.15 6.81 6.09 86.36 0.53 7.34 16 27 C 0.53 11.70 6.99 87.94 0.61 12.32 16 28 O -0.49 -12.65 17.75 -2.90 -0.05 -12.70 16 29 H 0.11 0.74 8.14 -2.39 -0.02 0.72 16 30 H 0.09 1.07 8.14 -2.39 -0.02 1.05 16 31 H 0.04 0.83 8.14 -2.39 -0.02 0.81 16 32 H 0.07 0.49 8.14 -2.39 -0.02 0.47 16 33 H 0.09 0.55 8.14 -2.39 -0.02 0.53 16 34 H 0.11 0.17 8.14 -2.39 -0.02 0.15 16 35 H 0.45 4.89 8.96 -92.71 -0.83 4.06 16 36 H 0.15 2.52 7.86 -2.39 -0.02 2.51 16 37 H 0.16 2.18 8.00 -2.39 -0.02 2.16 16 38 H 0.42 7.46 8.60 -92.71 -0.80 6.66 16 39 H 0.09 2.10 8.14 -2.39 -0.02 2.08 16 40 H 0.08 2.13 8.14 -2.39 -0.02 2.11 16 41 H 0.05 1.77 8.14 -2.39 -0.02 1.75 16 42 H 0.09 2.64 8.14 -2.39 -0.02 2.63 16 43 H 0.05 3.05 6.03 -2.39 -0.01 3.03 16 44 H 0.01 0.35 8.14 -2.39 -0.02 0.33 16 45 H 0.25 14.71 8.31 -92.71 -0.77 13.94 16 46 H 0.02 1.02 8.14 -2.39 -0.02 1.00 16 47 H 0.02 1.15 7.93 -2.38 -0.02 1.13 16 Total: -1.00 -88.24 387.31 0.27 -87.97 By element: Atomic # 1 Polarization: 14.70 SS G_CDS: -0.62 Total: 14.07 kcal Atomic # 6 Polarization: 39.81 SS G_CDS: 7.35 Total: 47.17 kcal Atomic # 7 Polarization: -133.40 SS G_CDS: -8.32 Total: -141.72 kcal Atomic # 8 Polarization: -56.77 SS G_CDS: -0.17 Total: -56.94 kcal Atomic # 14 Polarization: 47.42 SS G_CDS: 2.03 Total: 49.45 kcal Total: -88.24 0.27 -87.97 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001009419191.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.544 kcal (2) G-P(sol) polarization free energy of solvation -88.238 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.694 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.271 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.967 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.423 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds