Wall clock time and date at job start Tue Mar 31 2020 21:32:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 C 1.34776 * 119.99460 * 2 1 4 4 O 1.21280 * 119.99754 * 180.02562 * 3 2 1 5 5 C 1.50697 * 120.00174 * 359.71701 * 3 2 1 6 6 N 1.46504 * 109.46837 * 180.27831 * 5 3 2 7 7 C 1.33791 * 124.17740 * 90.02910 * 6 5 3 8 8 O 1.21541 * 123.77141 * 359.95847 * 7 6 5 9 9 N 1.34532 * 112.45745 * 179.97438 * 7 6 5 10 10 C 1.47307 * 106.61774 * 359.97438 * 9 7 6 11 11 C 1.53007 * 110.59782 * 118.52682 * 10 9 7 12 12 C 1.52996 * 110.60166 * 241.31820 * 10 9 7 13 13 C 1.34769 * 124.17675 * 269.72678 * 6 5 3 14 14 O 1.21235 * 127.15785 * 0.02562 * 13 6 5 15 15 C 1.46497 * 119.99900 * 179.97438 * 2 1 3 16 16 H 1.08999 * 110.63911 * 178.31715 * 15 2 1 17 17 C 1.55154 * 110.72444 * 54.97947 * 15 2 1 18 18 C 1.54909 * 101.58243 * 277.13795 * 17 15 2 19 19 N 1.47432 * 104.82988 * 322.98939 * 18 17 15 20 20 C 1.36931 * 125.64299 * 204.16509 * 19 18 17 21 21 H 1.07999 * 120.00603 * 342.05044 * 20 19 18 22 22 C 1.38816 * 119.99666 * 162.05312 * 20 19 18 23 23 N 1.31618 * 120.00180 * 156.86413 * 22 20 19 24 24 Si 1.86799 * 119.99917 * 336.86620 * 22 20 19 25 25 H 1.48500 * 109.47110 * 84.83873 * 24 22 20 26 26 H 1.48502 * 109.46965 * 204.83364 * 24 22 20 27 27 H 1.48494 * 109.47345 * 324.83600 * 24 22 20 28 28 C 1.47016 * 108.70228 * 24.12855 * 19 18 17 29 29 H 1.09005 * 109.46817 * 90.00808 * 1 2 3 30 30 H 1.09000 * 109.46828 * 209.99890 * 1 2 3 31 31 H 1.08994 * 109.47406 * 330.00789 * 1 2 3 32 32 H 1.09002 * 109.47651 * 300.27836 * 5 3 2 33 33 H 1.09001 * 109.46884 * 60.28377 * 5 3 2 34 34 H 0.96994 * 126.69185 * 179.97438 * 9 7 6 35 35 H 1.09004 * 109.46794 * 61.45322 * 11 10 9 36 36 H 1.09000 * 109.47355 * 181.45341 * 11 10 9 37 37 H 1.08998 * 109.47123 * 301.45375 * 11 10 9 38 38 H 1.09003 * 109.46943 * 58.54919 * 12 10 9 39 39 H 1.09003 * 109.47765 * 178.54799 * 12 10 9 40 40 H 1.08999 * 109.47283 * 298.55154 * 12 10 9 41 41 H 1.09002 * 111.00197 * 35.21141 * 17 15 2 42 42 H 1.08991 * 111.00691 * 159.05863 * 17 15 2 43 43 H 1.08989 * 110.36795 * 204.15079 * 18 17 15 44 44 H 1.08999 * 110.46119 * 81.86921 * 18 17 15 45 45 H 0.97000 * 120.00111 * 180.02562 * 23 22 20 46 46 H 1.09005 * 109.88417 * 239.52515 * 28 19 18 47 47 H 1.08997 * 109.88270 * 118.35809 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1388 1.1673 0.0000 4 8 3.3516 1.1673 -0.0005 5 6 1.3853 2.4723 -0.0064 6 7 2.3373 3.5858 -0.0118 7 6 2.8253 4.1520 -1.1214 8 8 2.5290 3.7996 -2.2462 9 7 3.6810 5.1548 -0.8530 10 6 3.7624 5.2578 0.6142 11 6 5.1916 4.9958 1.0937 12 6 3.2818 6.6320 1.0849 13 6 2.8251 4.1702 1.1003 14 8 2.5691 3.8841 2.2503 15 6 2.1975 -1.2687 0.0006 16 1 3.2726 -1.0917 -0.0295 17 6 1.7508 -2.1611 -1.1874 18 6 0.4720 -2.8226 -0.6159 19 7 0.7746 -3.0618 0.8071 20 6 0.1821 -4.0072 1.6009 21 1 -0.7553 -4.4528 1.3023 22 6 0.7864 -4.3930 2.7896 23 7 0.0635 -4.9214 3.7542 24 14 2.6258 -4.1623 3.0200 25 1 2.8959 -2.7807 3.4928 26 1 3.1246 -5.1356 4.0246 27 1 3.3189 -4.3872 1.7262 28 6 1.8182 -2.1176 1.2323 29 1 -0.3633 -0.0001 -1.0277 30 1 -0.3633 -0.8900 0.5138 31 1 -0.3634 0.8900 0.5137 32 1 0.7586 2.5257 -0.8967 33 1 0.7586 2.5343 0.8833 34 1 4.1524 5.7031 -1.4995 35 1 5.8599 5.7459 0.6708 36 1 5.2256 5.0510 2.1818 37 1 5.5073 4.0040 0.7702 38 1 2.2550 6.7903 0.7552 39 1 3.3253 6.6791 2.1730 40 1 3.9227 7.4055 0.6618 41 1 1.5195 -1.5568 -2.0646 42 1 2.5078 -2.9101 -1.4197 43 1 0.2727 -3.7654 -1.1250 44 1 -0.3810 -2.1512 -0.7146 45 1 0.4857 -5.1906 4.5849 46 1 2.6910 -2.6653 1.5880 47 1 1.4349 -1.4728 2.0231 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001033637834.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:32:28 Heat of formation + Delta-G solvation = -50.025170 kcal Electronic energy + Delta-G solvation = -31051.334197 eV Core-core repulsion = 26849.973819 eV Total energy + Delta-G solvation = -4201.360378 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -43.71997 -41.40881 -39.83278 -39.36888 -37.73014 -36.36125 -36.14494 -34.29972 -32.56810 -31.74847 -30.40347 -29.52479 -28.47009 -27.75225 -26.10332 -25.35779 -23.79389 -22.47887 -22.03932 -21.51966 -20.32848 -19.17012 -19.07146 -18.75398 -17.94252 -17.59518 -17.45841 -16.97328 -16.82632 -16.65782 -16.61573 -15.59548 -15.41429 -15.36264 -15.30438 -15.20484 -14.76875 -14.44485 -14.13713 -13.90109 -13.69292 -13.55503 -13.41808 -13.40553 -13.28705 -13.16377 -13.09668 -12.99025 -12.60404 -12.44831 -12.29137 -12.19092 -12.01482 -11.91402 -11.72069 -11.45157 -11.28386 -10.81515 -10.74946 -10.52155 -9.80090 -9.10107 -8.23102 -5.46495 0.47668 0.91606 1.23641 1.30515 1.32843 1.39145 1.66988 2.00607 2.07778 2.35089 2.78658 2.96738 3.24232 3.34273 3.46760 3.65050 3.71157 3.74102 3.79606 4.00436 4.09387 4.16606 4.22748 4.30416 4.40411 4.47330 4.57814 4.63210 4.63898 4.68015 4.71906 4.77324 4.82941 4.88792 4.94997 5.06499 5.07414 5.17567 5.22297 5.42355 5.64564 5.75282 5.87841 6.07496 6.17526 6.26365 6.70783 6.87252 7.01800 7.49820 8.06217 8.97067 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.018376 B = 0.003158 C = 0.002941 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1523.382971 B = 8864.791321 C = 9519.652708 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.058 3.942 2 N -0.591 5.591 3 C 0.496 3.504 4 O -0.578 6.578 5 C 0.101 3.899 6 N -0.568 5.568 7 C 0.705 3.295 8 O -0.575 6.575 9 N -0.698 5.698 10 C 0.127 3.873 11 C -0.146 4.146 12 C -0.140 4.140 13 C 0.523 3.477 14 O -0.490 6.490 15 C 0.135 3.865 16 H 0.094 0.906 17 C -0.127 4.127 18 C 0.121 3.879 19 N -0.621 5.621 20 C -0.224 4.224 21 H 0.074 0.926 22 C -0.030 4.030 23 N -0.949 5.949 24 Si 0.938 3.062 25 H -0.289 1.289 26 H -0.308 1.308 27 H -0.274 1.274 28 C 0.112 3.888 29 H 0.091 0.909 30 H 0.075 0.925 31 H 0.095 0.905 32 H 0.153 0.847 33 H 0.145 0.855 34 H 0.453 0.547 35 H 0.114 0.886 36 H 0.087 0.913 37 H 0.045 0.955 38 H 0.067 0.933 39 H 0.088 0.912 40 H 0.111 0.889 41 H 0.104 0.896 42 H 0.081 0.919 43 H 0.051 0.949 44 H 0.063 0.937 45 H 0.262 0.738 46 H 0.014 0.986 47 H 0.027 0.973 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.738 27.920 -10.974 30.544 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 N -0.323 5.323 3 C 0.284 3.716 4 O -0.458 6.458 5 C -0.023 4.023 6 N -0.313 5.313 7 C 0.405 3.595 8 O -0.452 6.452 9 N -0.364 5.364 10 C 0.037 3.963 11 C -0.204 4.204 12 C -0.198 4.198 13 C 0.311 3.689 14 O -0.361 6.361 15 C 0.030 3.970 16 H 0.112 0.888 17 C -0.166 4.166 18 C -0.003 4.003 19 N -0.348 5.348 20 C -0.353 4.353 21 H 0.092 0.908 22 C -0.225 4.225 23 N -0.596 5.596 24 Si 0.770 3.230 25 H -0.217 1.217 26 H -0.236 1.236 27 H -0.200 1.200 28 C -0.013 4.013 29 H 0.110 0.890 30 H 0.094 0.906 31 H 0.113 0.887 32 H 0.171 0.829 33 H 0.163 0.837 34 H 0.301 0.699 35 H 0.133 0.867 36 H 0.106 0.894 37 H 0.064 0.936 38 H 0.086 0.914 39 H 0.107 0.893 40 H 0.130 0.870 41 H 0.122 0.878 42 H 0.099 0.901 43 H 0.070 0.930 44 H 0.081 0.919 45 H 0.071 0.929 46 H 0.031 0.969 47 H 0.045 0.955 Dipole moment (debyes) X Y Z Total from point charges 5.941 27.382 -10.742 30.007 hybrid contribution 1.043 -0.798 0.528 1.415 sum 6.983 26.584 -10.215 29.322 Atomic orbital electron populations 1.22383 0.76873 1.04893 1.04200 1.47795 1.08610 1.04328 1.71595 1.21338 0.88113 0.86538 0.75608 1.90664 1.15571 1.87740 1.51855 1.21691 0.90488 0.80921 1.09243 1.46046 1.43851 1.32514 1.08890 1.15924 0.79718 0.80439 0.83381 1.90989 1.64840 1.67698 1.21629 1.45563 1.46929 1.36028 1.07869 1.21628 0.97314 0.96685 0.80651 1.22048 0.91435 1.03396 1.03496 1.22047 1.02935 0.91259 1.03576 1.21565 0.80082 0.82889 0.84334 1.90800 1.60175 1.66345 1.18763 1.21855 0.96934 0.82970 0.95241 0.88777 1.23060 0.98485 0.98319 0.96688 1.22135 0.96355 0.99142 0.82650 1.44901 1.44767 1.36930 1.08223 1.18634 1.01904 1.14549 1.00212 0.90785 1.25442 1.00453 1.00205 0.96412 1.69934 1.35907 1.48533 1.05248 0.86083 0.84592 0.75887 0.76413 1.21708 1.23623 1.20023 1.21939 0.91619 0.91408 0.96365 0.89040 0.90622 0.88697 0.82914 0.83720 0.69894 0.86727 0.89387 0.93622 0.91428 0.89295 0.87043 0.87797 0.90079 0.93017 0.91939 0.92909 0.96860 0.95518 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 1.32 8.33 127.77 1.06 2.39 16 2 N -0.59 -17.67 2.82 -815.96 -2.30 -19.98 16 3 C 0.50 15.30 7.74 87.66 0.68 15.98 16 4 O -0.58 -22.34 15.80 -3.03 -0.05 -22.39 16 5 C 0.10 2.25 4.73 85.63 0.41 2.66 16 6 N -0.57 -13.34 2.09 -777.20 -1.63 -14.97 16 7 C 0.70 16.18 8.62 179.44 1.55 17.73 16 8 O -0.58 -16.86 17.48 -3.84 -0.07 -16.93 16 9 N -0.70 -9.65 5.90 -439.81 -2.60 -12.24 16 10 C 0.13 1.70 1.37 2.99 0.00 1.70 16 11 C -0.15 -1.69 8.99 71.98 0.65 -1.04 16 12 C -0.14 -0.92 8.98 71.98 0.65 -0.27 16 13 C 0.52 11.86 6.99 87.94 0.61 12.47 16 14 O -0.49 -13.99 17.75 -2.89 -0.05 -14.04 16 15 C 0.13 4.77 3.58 46.18 0.17 4.93 16 16 H 0.09 3.57 6.99 -2.39 -0.02 3.55 16 17 C -0.13 -3.82 6.53 31.99 0.21 -3.61 16 18 C 0.12 4.21 6.35 86.85 0.55 4.76 16 19 N -0.62 -28.76 2.79 -692.00 -1.93 -30.69 16 20 C -0.22 -12.59 10.57 84.04 0.89 -11.70 16 21 H 0.07 4.39 8.06 -2.91 -0.02 4.37 16 22 C -0.03 -1.78 5.44 84.86 0.46 -1.32 16 23 N -0.95 -59.98 13.97 21.65 0.30 -59.67 16 24 Si 0.94 49.31 24.38 68.60 1.67 50.98 16 25 H -0.29 -15.12 6.85 99.48 0.68 -14.44 16 26 H -0.31 -16.21 7.11 99.48 0.71 -15.50 16 27 H -0.27 -13.95 6.86 99.48 0.68 -13.26 16 28 C 0.11 4.99 4.25 86.73 0.37 5.36 16 29 H 0.09 1.56 7.99 -2.38 -0.02 1.54 16 30 H 0.08 2.24 5.19 -2.39 -0.01 2.23 16 31 H 0.09 1.59 6.45 -2.39 -0.02 1.58 16 32 H 0.15 2.59 7.82 -2.39 -0.02 2.57 16 33 H 0.15 2.64 7.26 -2.39 -0.02 2.62 16 34 H 0.45 3.44 8.96 -92.71 -0.83 2.61 16 35 H 0.11 0.52 8.14 -2.39 -0.02 0.50 16 36 H 0.09 1.00 8.14 -2.39 -0.02 0.98 16 37 H 0.04 0.80 8.14 -2.39 -0.02 0.78 16 38 H 0.07 0.49 8.14 -2.39 -0.02 0.47 16 39 H 0.09 0.59 8.14 -2.39 -0.02 0.57 16 40 H 0.11 0.08 8.14 -2.39 -0.02 0.06 16 41 H 0.10 2.53 8.14 -2.39 -0.02 2.51 16 42 H 0.08 2.45 8.14 -2.39 -0.02 2.43 16 43 H 0.05 1.81 8.14 -2.39 -0.02 1.79 16 44 H 0.06 1.90 5.54 -2.39 -0.01 1.89 16 45 H 0.26 15.85 8.31 -92.71 -0.77 15.08 16 46 H 0.01 0.68 3.32 -2.38 -0.01 0.68 16 47 H 0.03 1.28 8.04 -2.39 -0.02 1.26 16 Total: -1.00 -84.76 373.51 1.74 -83.02 By element: Atomic # 1 Polarization: 6.74 SS G_CDS: 0.13 Total: 6.87 kcal Atomic # 6 Polarization: 41.79 SS G_CDS: 8.25 Total: 50.04 kcal Atomic # 7 Polarization: -129.39 SS G_CDS: -8.15 Total: -137.55 kcal Atomic # 8 Polarization: -53.20 SS G_CDS: -0.17 Total: -53.37 kcal Atomic # 14 Polarization: 49.31 SS G_CDS: 1.67 Total: 50.98 kcal Total: -84.76 1.74 -83.02 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001033637834.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.997 kcal (2) G-P(sol) polarization free energy of solvation -84.760 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.763 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.737 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.022 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.025 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds