Wall clock time and date at job start Tue Mar 31 2020 22:05:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 N 1.30278 * 126.28102 * 2 1 4 4 N 1.28666 * 109.38108 * 179.72828 * 3 2 1 5 5 C 1.30272 * 109.37999 * 0.44623 * 4 3 2 6 6 C 1.50695 * 126.28095 * 179.82572 * 5 4 3 7 7 C 1.50705 * 109.47411 * 89.68929 * 6 5 4 8 8 O 1.21283 * 119.99722 * 359.97438 * 7 6 5 9 9 N 1.34770 * 120.00348 * 179.97438 * 7 6 5 10 10 C 1.46926 * 120.63151 * 359.72175 * 9 7 6 11 11 C 1.52760 * 109.00643 * 233.58624 * 10 9 7 12 12 C 1.53045 * 109.38247 * 305.58362 * 11 10 9 13 13 N 1.46504 * 109.44977 * 181.25680 * 12 11 10 14 14 C 1.36936 * 119.99670 * 299.93731 * 13 12 11 15 15 H 1.08000 * 120.00475 * 326.29089 * 14 13 12 16 16 C 1.38812 * 119.99713 * 146.29514 * 14 13 12 17 17 N 1.31624 * 119.99771 * 337.22977 * 16 14 13 18 18 Si 1.86800 * 120.00236 * 157.23637 * 16 14 13 19 19 H 1.48504 * 109.47000 * 59.99734 * 18 16 14 20 20 H 1.48495 * 109.47343 * 179.97438 * 18 16 14 21 21 H 1.48491 * 109.46945 * 299.99909 * 18 16 14 22 22 C 1.46502 * 119.99868 * 119.94109 * 13 12 11 23 23 C 1.52995 * 109.47211 * 84.40926 * 22 13 12 24 24 O 1.42902 * 109.46674 * 65.00040 * 23 22 13 25 25 C 1.53037 * 109.53793 * 61.23876 * 12 11 10 26 26 C 1.46928 * 120.63172 * 179.97438 * 9 7 6 27 27 O 1.34358 * 126.28459 * 179.97438 * 2 1 3 28 28 H 1.08995 * 109.47296 * 270.00162 * 1 2 3 29 29 H 1.09002 * 109.46890 * 30.00388 * 1 2 3 30 30 H 1.09003 * 109.46763 * 150.00343 * 1 2 3 31 31 H 1.08997 * 109.47716 * 329.68810 * 6 5 4 32 32 H 1.09005 * 109.47414 * 209.68822 * 6 5 4 33 33 H 1.09003 * 109.58750 * 353.41376 * 10 9 7 34 34 H 1.08992 * 109.59215 * 113.84230 * 10 9 7 35 35 H 1.09000 * 109.56435 * 185.55284 * 11 10 9 36 36 H 1.09004 * 109.39266 * 65.51087 * 11 10 9 37 37 H 1.09004 * 109.45747 * 301.22268 * 12 11 10 38 38 H 0.97001 * 120.00017 * 179.97438 * 17 16 14 39 39 H 1.08997 * 109.46457 * 204.41529 * 22 13 12 40 40 H 1.09004 * 109.47066 * 324.41103 * 22 13 12 41 41 H 1.09004 * 109.46894 * 184.99689 * 23 22 13 42 42 H 1.08996 * 109.47308 * 305.00008 * 23 22 13 43 43 H 0.96703 * 113.99628 * 179.97438 * 24 23 22 44 44 H 1.08995 * 109.49978 * 178.68385 * 25 12 11 45 45 H 1.09010 * 109.52126 * 58.60597 * 25 12 11 46 46 H 1.08998 * 109.59194 * 246.15659 * 26 9 7 47 47 H 1.09005 * 109.58247 * 6.44447 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2780 1.0502 0.0000 4 7 3.5090 0.6762 0.0058 5 6 3.5655 -0.6253 0.0001 6 6 4.8177 -1.4636 0.0001 7 6 5.2352 -1.7431 1.4209 8 8 4.5805 -1.3043 2.3428 9 7 6.3359 -2.4806 1.6672 10 6 7.1358 -3.0241 0.5611 11 6 7.2963 -4.5307 0.7566 12 6 7.8771 -4.8036 2.1460 13 7 8.0596 -6.2463 2.3237 14 6 6.9819 -7.0875 2.2453 15 1 6.0131 -6.7576 2.5901 16 6 7.1348 -8.3644 1.7228 17 7 8.1382 -8.6282 0.9128 18 14 5.9164 -9.7082 2.1689 19 1 4.5541 -9.3045 1.7370 20 1 6.2985 -10.9697 1.4850 21 1 5.9277 -9.9185 3.6388 22 6 9.3951 -6.7889 2.5853 23 6 9.6967 -6.7017 4.0826 24 8 8.7971 -7.5493 4.7998 25 6 6.9173 -4.2756 3.2147 26 6 6.7558 -2.7611 3.0470 27 8 2.3022 -1.0830 0.0005 28 1 -0.3633 0.0000 1.0276 29 1 -0.3633 0.8900 -0.5139 30 1 -0.3633 -0.8901 -0.5138 31 1 5.6148 -0.9263 -0.5137 32 1 4.6246 -2.4054 -0.5138 33 1 6.6296 -2.8318 -0.3849 34 1 8.1185 -2.5526 0.5546 35 1 7.9693 -4.9277 -0.0034 36 1 6.3227 -5.0128 0.6682 37 1 8.8396 -4.3011 2.2423 38 1 8.2453 -9.5206 0.5479 39 1 9.4325 -7.8307 2.2670 40 1 10.1362 -6.2129 2.0312 41 1 10.7222 -7.0225 4.2659 42 1 9.5723 -5.6724 4.4190 43 1 8.9311 -7.5442 5.7575 44 1 7.3203 -4.4910 4.2042 45 1 5.9468 -4.7596 3.1039 46 1 7.7070 -2.2677 3.2471 47 1 6.0001 -2.3929 3.7409 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001098358654.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:05:27 Heat of formation + Delta-G solvation = -47.527901 kcal Electronic energy + Delta-G solvation = -30208.083283 eV Core-core repulsion = 26006.831195 eV Total energy + Delta-G solvation = -4201.252088 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -45.31760 -41.30761 -39.14618 -37.68532 -37.28077 -36.24988 -34.76803 -33.82881 -32.61136 -31.93084 -31.33083 -29.42789 -28.32286 -26.51834 -24.99888 -24.25308 -23.81644 -23.49630 -22.29226 -21.54610 -20.19228 -18.97728 -18.25598 -18.19407 -18.18329 -17.75537 -17.03881 -16.74103 -16.60744 -16.04823 -15.82303 -15.60374 -15.45497 -15.11637 -14.68675 -14.67810 -14.41663 -14.10061 -13.95638 -13.79980 -13.57860 -13.52160 -13.36088 -13.25235 -13.08958 -12.99187 -12.97549 -12.73304 -12.53820 -12.37811 -12.10649 -12.03041 -11.80535 -11.58834 -11.52223 -11.22161 -11.04822 -10.63010 -10.51427 -10.34387 -9.69947 -8.46812 -7.73253 -5.23823 0.03760 1.13704 1.26936 1.42833 1.44119 1.48874 1.55305 1.99184 2.57969 2.75570 3.31941 3.37136 3.37370 3.58805 3.78718 3.85237 3.98850 4.05108 4.17751 4.25920 4.32175 4.33952 4.38751 4.48335 4.52456 4.53695 4.59271 4.65907 4.70373 4.73781 4.84250 4.85188 4.91682 4.95234 5.02336 5.10761 5.17989 5.22253 5.44487 5.63079 5.70086 5.77619 5.89764 6.30915 6.55950 6.97606 7.17508 7.20835 7.30466 8.02318 8.47777 9.24257 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.015377 B = 0.002815 C = 0.002585 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1820.492383 B = 9942.725055 C =10828.885494 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 C 0.169 3.831 3 N -0.328 5.328 4 N -0.306 5.306 5 C 0.181 3.819 6 C -0.043 4.043 7 C 0.518 3.482 8 O -0.589 6.589 9 N -0.596 5.596 10 C 0.109 3.891 11 C -0.129 4.129 12 C 0.171 3.829 13 N -0.584 5.584 14 C -0.220 4.220 15 H 0.040 0.960 16 C -0.031 4.031 17 N -0.916 5.916 18 Si 0.935 3.065 19 H -0.283 1.283 20 H -0.296 1.296 21 H -0.292 1.292 22 C 0.134 3.866 23 C 0.066 3.934 24 O -0.578 6.578 25 C -0.125 4.125 26 C 0.122 3.878 27 O -0.232 6.232 28 H 0.113 0.887 29 H 0.125 0.875 30 H 0.115 0.885 31 H 0.177 0.823 32 H 0.158 0.842 33 H 0.114 0.886 34 H 0.100 0.900 35 H 0.066 0.934 36 H 0.040 0.960 37 H 0.071 0.929 38 H 0.245 0.755 39 H 0.068 0.932 40 H 0.051 0.949 41 H 0.044 0.956 42 H 0.039 0.961 43 H 0.373 0.627 44 H 0.063 0.937 45 H 0.033 0.967 46 H 0.091 0.909 47 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.375 14.419 -2.977 15.360 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.041 4.041 3 N -0.174 5.174 4 N -0.152 5.152 5 C -0.031 4.031 6 C -0.083 4.083 7 C 0.306 3.694 8 O -0.470 6.470 9 N -0.328 5.328 10 C -0.012 4.012 11 C -0.169 4.169 12 C 0.064 3.936 13 N -0.303 5.303 14 C -0.350 4.350 15 H 0.058 0.942 16 C -0.227 4.227 17 N -0.562 5.562 18 Si 0.766 3.234 19 H -0.209 1.209 20 H -0.222 1.222 21 H -0.219 1.219 22 C 0.008 3.992 23 C -0.014 4.014 24 O -0.383 6.383 25 C -0.165 4.165 26 C -0.001 4.001 27 O -0.111 6.111 28 H 0.131 0.869 29 H 0.143 0.857 30 H 0.133 0.867 31 H 0.194 0.806 32 H 0.176 0.824 33 H 0.132 0.868 34 H 0.118 0.882 35 H 0.084 0.916 36 H 0.059 0.941 37 H 0.089 0.911 38 H 0.055 0.945 39 H 0.086 0.914 40 H 0.069 0.931 41 H 0.062 0.938 42 H 0.057 0.943 43 H 0.219 0.781 44 H 0.081 0.919 45 H 0.052 0.948 46 H 0.110 0.890 47 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -4.498 15.616 -3.207 16.564 hybrid contribution -0.689 -2.402 1.126 2.741 sum -5.187 13.214 -2.081 14.347 Atomic orbital electron populations 1.20738 0.76440 1.07605 1.06754 1.29093 0.99543 0.78674 0.96828 1.74284 0.96266 1.26958 1.19935 1.74241 1.13064 1.10025 1.17852 1.27439 0.85567 0.91160 0.98932 1.20416 0.89732 1.02057 0.96079 1.20476 0.80110 0.78000 0.90843 1.90719 1.54687 1.53825 1.47736 1.48147 1.25872 1.50160 1.08627 1.22045 0.97133 0.92998 0.89062 1.22096 1.01183 0.94769 0.98867 1.20538 0.96304 0.84220 0.92495 1.43892 1.03827 1.01303 1.81286 1.18720 0.90012 0.94859 1.31459 0.94207 1.25329 0.99137 1.00833 0.97382 1.70052 1.34076 1.20209 1.31897 0.85850 0.79798 0.80230 0.77525 1.20888 1.22199 1.21920 1.21036 0.85758 1.01510 0.90883 1.22934 0.90907 0.92264 0.95246 1.86778 1.60382 1.68554 1.22555 1.22176 1.00123 0.93961 1.00258 1.21595 1.00873 0.95231 0.82357 1.84789 1.17721 1.38949 1.69688 0.86873 0.85677 0.86654 0.80556 0.82419 0.86811 0.88215 0.91553 0.94096 0.91135 0.94531 0.91398 0.93120 0.93808 0.94256 0.78058 0.91857 0.94806 0.89040 0.91122 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.61 10.51 71.24 0.75 0.14 16 2 C 0.17 3.94 8.48 88.34 0.75 4.69 16 3 N -0.33 -9.63 12.22 -165.50 -2.02 -11.65 16 4 N -0.31 -9.45 12.22 -165.51 -2.02 -11.47 16 5 C 0.18 4.84 6.97 88.34 0.62 5.46 16 6 C -0.04 -0.82 4.68 29.10 0.14 -0.68 16 7 C 0.52 14.14 7.69 87.66 0.67 14.81 16 8 O -0.59 -21.72 15.45 -3.04 -0.05 -21.77 16 9 N -0.60 -14.82 2.98 -819.67 -2.44 -17.26 16 10 C 0.11 2.17 6.31 86.22 0.54 2.71 16 11 C -0.13 -3.99 5.29 30.53 0.16 -3.82 16 12 C 0.17 5.89 2.60 45.02 0.12 6.00 16 13 N -0.58 -25.93 2.35 -677.87 -1.59 -27.52 16 14 C -0.22 -11.44 8.06 84.03 0.68 -10.76 16 15 H 0.04 2.18 6.87 -2.91 -0.02 2.16 16 16 C -0.03 -1.68 4.90 84.86 0.42 -1.26 16 17 N -0.92 -51.67 11.36 21.65 0.25 -51.42 16 18 Si 0.94 45.73 29.61 68.60 2.03 47.76 16 19 H -0.28 -13.47 7.11 99.48 0.71 -12.77 16 20 H -0.30 -14.43 7.11 99.48 0.71 -13.73 16 21 H -0.29 -14.58 7.11 99.48 0.71 -13.87 16 22 C 0.13 5.79 5.57 86.38 0.48 6.27 16 23 C 0.07 2.36 7.39 71.98 0.53 2.89 16 24 O -0.58 -23.07 13.40 -148.98 -2.00 -25.07 16 25 C -0.13 -4.15 5.30 30.68 0.16 -3.99 16 26 C 0.12 3.32 6.44 86.37 0.56 3.88 16 27 O -0.23 -6.13 10.87 -3.62 -0.04 -6.17 16 28 H 0.11 0.94 8.14 -2.39 -0.02 0.92 16 29 H 0.12 0.85 8.14 -2.39 -0.02 0.83 16 30 H 0.11 0.73 8.14 -2.39 -0.02 0.71 16 31 H 0.18 2.05 7.95 -2.39 -0.02 2.03 16 32 H 0.16 2.14 7.68 -2.38 -0.02 2.12 16 33 H 0.11 1.47 5.94 -2.39 -0.01 1.46 16 34 H 0.10 1.52 8.14 -2.39 -0.02 1.50 16 35 H 0.07 2.20 8.14 -2.39 -0.02 2.18 16 36 H 0.04 1.52 7.71 -2.38 -0.02 1.50 16 37 H 0.07 2.13 7.87 -2.39 -0.02 2.12 16 38 H 0.25 13.70 8.31 -92.71 -0.77 12.92 16 39 H 0.07 3.55 5.35 -2.39 -0.01 3.54 16 40 H 0.05 1.97 8.04 -2.39 -0.02 1.95 16 41 H 0.04 1.35 8.14 -2.39 -0.02 1.33 16 42 H 0.04 1.26 8.14 -2.39 -0.02 1.24 16 43 H 0.37 10.57 9.12 -74.06 -0.68 9.89 16 44 H 0.06 2.14 8.14 -2.39 -0.02 2.12 16 45 H 0.03 1.34 7.03 -2.38 -0.02 1.33 16 46 H 0.09 2.03 8.14 -2.39 -0.02 2.01 16 47 H 0.07 2.17 7.00 -2.38 -0.02 2.15 16 Total: -1.00 -81.60 384.12 -0.99 -82.59 By element: Atomic # 1 Polarization: 15.31 SS G_CDS: 0.33 Total: 15.64 kcal Atomic # 6 Polarization: 19.77 SS G_CDS: 6.57 Total: 26.35 kcal Atomic # 7 Polarization: -111.50 SS G_CDS: -7.83 Total: -119.33 kcal Atomic # 8 Polarization: -50.92 SS G_CDS: -2.08 Total: -53.00 kcal Atomic # 14 Polarization: 45.73 SS G_CDS: 2.03 Total: 47.76 kcal Total: -81.60 -0.99 -82.59 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001098358654.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.061 kcal (2) G-P(sol) polarization free energy of solvation -81.603 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.542 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.986 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.589 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.528 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds