Wall clock time and date at job start Tue Mar 31 2020 20:50:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 N 1.33228 * 126.02017 * 2 1 4 4 C 1.31533 * 109.76326 * 179.97438 * 3 2 1 5 5 O 1.35207 * 125.49335 * 179.97438 * 4 3 2 6 6 N 1.34946 * 109.01438 * 359.97438 * 4 3 2 7 7 H 0.96995 * 126.54883 * 180.02562 * 6 4 3 8 8 C 1.36715 * 126.01709 * 179.97438 * 2 1 3 9 9 C 1.46381 * 126.82646 * 359.97305 * 8 2 1 10 10 O 1.21736 * 119.99497 * 105.31502 * 9 8 2 11 11 N 1.34770 * 120.00338 * 285.30909 * 9 8 2 12 12 C 1.46928 * 120.63110 * 5.05079 * 11 9 8 13 13 C 1.52757 * 109.00715 * 233.58132 * 12 11 9 14 14 C 1.53040 * 109.38127 * 305.58402 * 13 12 11 15 15 N 1.46500 * 109.45637 * 181.26168 * 14 13 12 16 16 C 1.36931 * 120.00424 * 299.93044 * 15 14 13 17 17 H 1.08008 * 120.00272 * 322.33280 * 16 15 14 18 18 C 1.38814 * 120.00453 * 142.32961 * 16 15 14 19 19 N 1.31620 * 120.00335 * 160.05350 * 18 16 15 20 20 Si 1.86799 * 119.99810 * 340.05059 * 18 16 15 21 21 H 1.48507 * 109.47020 * 93.39277 * 20 18 16 22 22 H 1.48494 * 109.47527 * 213.39414 * 20 18 16 23 23 H 1.48502 * 109.47066 * 333.39979 * 20 18 16 24 24 C 1.46508 * 120.00053 * 119.93674 * 15 14 13 25 25 C 1.52997 * 109.47170 * 83.45891 * 24 15 14 26 26 O 1.42900 * 109.47289 * 63.72148 * 25 24 15 27 27 C 1.53039 * 109.53711 * 61.24661 * 14 13 12 28 28 C 1.46927 * 120.63235 * 185.32115 * 11 9 8 29 29 H 1.08997 * 109.47490 * 90.02037 * 1 2 3 30 30 H 1.08995 * 109.47544 * 210.02908 * 1 2 3 31 31 H 1.09007 * 109.47042 * 330.02463 * 1 2 3 32 32 H 0.96698 * 113.99880 * 90.02923 * 5 4 3 33 33 H 1.09002 * 109.58514 * 353.41618 * 12 11 9 34 34 H 1.08997 * 109.58802 * 113.83809 * 12 11 9 35 35 H 1.09005 * 109.56515 * 185.55218 * 13 12 11 36 36 H 1.09003 * 109.36180 * 65.49811 * 13 12 11 37 37 H 1.08997 * 109.45056 * 301.22258 * 14 13 12 38 38 H 0.97001 * 119.99996 * 179.97438 * 19 18 16 39 39 H 1.09004 * 109.47315 * 203.46141 * 24 15 14 40 40 H 1.08999 * 109.46686 * 323.45592 * 24 15 14 41 41 H 1.09002 * 109.46986 * 183.71609 * 25 24 15 42 42 H 1.08997 * 109.47073 * 303.71390 * 25 24 15 43 43 H 0.96694 * 114.00150 * 180.02562 * 26 25 24 44 44 H 1.09001 * 109.49507 * 178.68560 * 27 14 13 45 45 H 1.08997 * 109.50045 * 58.58289 * 27 14 13 46 46 H 1.08997 * 109.58992 * 246.15888 * 28 11 9 47 47 H 1.09000 * 109.58192 * 6.44640 * 28 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2904 1.0776 0.0000 4 6 3.5532 0.7093 0.0006 5 8 4.6150 1.5464 0.0002 6 7 3.6181 -0.6386 0.0015 7 1 4.4242 -1.1780 0.0024 8 6 2.3109 -1.1058 0.0005 9 6 1.8791 -2.5045 0.0017 10 8 1.9653 -3.1689 -1.0148 11 7 1.3863 -3.0567 1.1279 12 6 1.1730 -2.2402 2.3307 13 6 1.8904 -2.8947 3.5099 14 6 1.4256 -4.3465 3.6448 15 7 2.0901 -4.9669 4.7937 16 6 3.4562 -5.0533 4.8301 17 1 4.0086 -5.2606 3.9254 18 6 4.1314 -4.8742 6.0297 19 7 5.3589 -5.3285 6.1682 20 14 3.2977 -3.9885 7.4474 21 1 2.6414 -4.9822 8.3345 22 1 4.3118 -3.2280 8.2209 23 1 2.2770 -3.0511 6.9137 24 6 1.2930 -5.4951 5.9037 25 6 0.8148 -6.9075 5.5613 26 8 1.9437 -7.7733 5.4274 27 6 1.7816 -5.1183 2.3721 28 6 1.0576 -4.4878 1.1782 29 1 -0.3634 -0.0004 -1.0276 30 1 -0.3634 -0.8897 0.5142 31 1 -0.3633 0.8903 0.5135 32 1 4.9239 1.7901 0.8835 33 1 1.5753 -1.2401 2.1695 34 1 0.1062 -2.1770 2.5450 35 1 1.6576 -2.3516 4.4259 36 1 2.9663 -2.8717 3.3363 37 1 0.3461 -4.3697 3.7937 38 1 5.8308 -5.2030 7.0064 39 1 1.9032 -5.5269 6.8063 40 1 0.4305 -4.8499 6.0707 41 1 0.1676 -7.2750 6.3577 42 1 0.2601 -6.8859 4.6233 43 1 1.7148 -8.6872 5.2097 44 1 1.4712 -6.1577 2.4782 45 1 2.8584 -5.0744 2.2092 46 1 -0.0188 -4.6117 1.2967 47 1 1.3816 -4.9697 0.2558 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001098399234.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:50:24 Heat of formation + Delta-G solvation = -26.939389 kcal Electronic energy + Delta-G solvation = -31064.057754 eV Core-core repulsion = 26863.698451 eV Total energy + Delta-G solvation = -4200.359303 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -42.43177 -39.88421 -37.89295 -37.51828 -36.37934 -34.82907 -33.44044 -32.27195 -31.47350 -30.87801 -30.39254 -28.11828 -27.24119 -25.10524 -23.55817 -22.98562 -22.52429 -21.64703 -20.84580 -20.02781 -19.56253 -18.80143 -17.41756 -17.08395 -16.79763 -16.38473 -16.04571 -15.85736 -15.34888 -14.81747 -14.73804 -14.28113 -14.09011 -13.77875 -13.55818 -13.42363 -13.25419 -12.99388 -12.87316 -12.77757 -12.64365 -12.49949 -12.17119 -12.08098 -11.89635 -11.74177 -11.18448 -10.91127 -10.81414 -10.61215 -10.56528 -10.38095 -10.24858 -10.04294 -9.93146 -9.72869 -9.56108 -9.20750 -8.65822 -8.46506 -8.45200 -6.85193 -5.93355 -3.36447 1.34602 1.91850 2.54572 2.75821 3.11893 3.28315 3.41854 3.45139 3.71711 4.43057 4.52133 4.66628 4.71848 4.86398 5.00741 5.04541 5.27049 5.35543 5.38652 5.47951 5.51859 5.56074 5.60418 5.68269 5.72493 5.75977 5.80558 5.82051 5.94761 6.03325 6.06839 6.09003 6.23298 6.27197 6.33423 6.43788 6.49546 6.65868 6.66451 6.90175 6.92503 7.32338 7.37826 7.62321 8.01857 8.06182 8.35280 8.43451 8.97653 9.74733 10.10912 11.22689 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.013565 B = 0.003703 C = 0.003286 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2063.604101 B = 7560.414052 C = 8519.843867 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 C 0.068 3.932 3 N -0.481 5.481 4 C 0.396 3.604 5 O -0.441 6.441 6 N -0.540 5.540 7 H 0.427 0.573 8 C -0.054 4.054 9 C 0.595 3.405 10 O -0.533 6.533 11 N -0.588 5.588 12 C 0.106 3.894 13 C -0.141 4.141 14 C 0.181 3.819 15 N -0.593 5.593 16 C -0.244 4.244 17 H 0.075 0.925 18 C 0.037 3.963 19 N -0.903 5.903 20 Si 0.877 3.123 21 H -0.288 1.288 22 H -0.305 1.305 23 H -0.271 1.271 24 C 0.129 3.871 25 C 0.061 3.939 26 O -0.538 6.538 27 C -0.138 4.138 28 C 0.114 3.886 29 H 0.076 0.924 30 H 0.073 0.927 31 H 0.080 0.920 32 H 0.406 0.594 33 H 0.080 0.920 34 H 0.070 0.930 35 H 0.071 0.929 36 H 0.076 0.924 37 H 0.052 0.948 38 H 0.260 0.740 39 H 0.067 0.933 40 H 0.049 0.951 41 H 0.023 0.977 42 H 0.031 0.969 43 H 0.354 0.646 44 H 0.072 0.928 45 H 0.073 0.927 46 H 0.066 0.934 47 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.516 7.278 -7.518 14.835 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.066 4.066 3 N -0.212 5.212 4 C 0.096 3.904 5 O -0.242 6.242 6 N -0.157 5.157 7 H 0.266 0.734 8 C -0.171 4.171 9 C 0.380 3.620 10 O -0.410 6.410 11 N -0.320 5.320 12 C -0.017 4.017 13 C -0.181 4.181 14 C 0.073 3.927 15 N -0.313 5.313 16 C -0.373 4.373 17 H 0.093 0.907 18 C -0.162 4.162 19 N -0.545 5.545 20 Si 0.708 3.292 21 H -0.217 1.217 22 H -0.233 1.233 23 H -0.196 1.196 24 C 0.003 3.997 25 C -0.019 4.019 26 O -0.339 6.339 27 C -0.178 4.178 28 C -0.008 4.008 29 H 0.095 0.905 30 H 0.092 0.908 31 H 0.099 0.901 32 H 0.264 0.736 33 H 0.098 0.902 34 H 0.088 0.912 35 H 0.089 0.911 36 H 0.094 0.906 37 H 0.070 0.930 38 H 0.070 0.930 39 H 0.085 0.915 40 H 0.067 0.933 41 H 0.041 0.959 42 H 0.050 0.950 43 H 0.198 0.802 44 H 0.091 0.909 45 H 0.091 0.909 46 H 0.085 0.915 47 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -10.211 8.333 -8.388 15.622 hybrid contribution 0.396 -1.014 1.429 1.796 sum -9.814 7.319 -6.959 14.083 Atomic orbital electron populations 1.20220 0.86560 1.03425 1.03146 1.20740 0.96452 0.86116 1.03242 1.70151 0.98578 1.30171 1.22257 1.20029 0.87309 0.78526 1.04584 1.84836 1.43390 1.61466 1.34552 1.43535 1.08479 1.07794 1.55867 0.73353 1.20450 0.83946 0.95312 1.17414 1.16761 0.77987 0.83799 0.83484 1.90852 1.55777 1.62325 1.32020 1.48043 1.62531 1.10296 1.11141 1.21865 1.00654 0.94583 0.84595 1.22280 1.01884 0.97910 0.95986 1.20297 0.94521 0.90111 0.87740 1.44059 1.03347 1.65541 1.18394 1.18500 0.79767 1.42828 0.96207 0.90741 1.25381 0.94953 0.98246 0.97641 1.69850 1.12710 1.46119 1.25795 0.86978 0.78602 0.80439 0.83168 1.21661 1.23324 1.19589 1.21390 0.94850 0.90387 0.93063 1.22891 0.87997 0.93717 0.97343 1.86908 1.32052 1.21336 1.93600 1.22342 1.01751 0.99637 0.94049 1.21791 0.99476 0.78818 1.00700 0.90545 0.90769 0.90126 0.73588 0.90191 0.91211 0.91089 0.90570 0.92981 0.92997 0.91481 0.93299 0.95878 0.95031 0.80238 0.90944 0.90875 0.91535 0.89373 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.75 10.23 36.00 0.37 -0.38 16 2 C 0.07 0.87 6.25 -82.54 -0.52 0.36 16 3 N -0.48 -6.57 11.22 -10.83 -0.12 -6.69 16 4 C 0.40 4.83 9.43 -89.60 -0.84 3.99 16 5 O -0.44 -4.22 13.62 -17.32 -0.24 -4.46 16 6 N -0.54 -6.52 6.24 -10.90 -0.07 -6.59 16 7 H 0.43 4.38 8.96 -40.82 -0.37 4.01 16 8 C -0.05 -0.73 5.32 -81.97 -0.44 -1.16 16 9 C 0.59 8.84 7.15 -12.99 -0.09 8.75 16 10 O -0.53 -9.55 16.55 5.16 0.09 -9.46 16 11 N -0.59 -7.95 2.98 -174.68 -0.52 -8.47 16 12 C 0.11 1.32 5.56 -3.93 -0.02 1.30 16 13 C -0.14 -2.24 5.29 -26.84 -0.14 -2.38 16 14 C 0.18 3.05 2.59 -67.89 -0.18 2.88 16 15 N -0.59 -12.59 1.97 -165.61 -0.33 -12.92 16 16 C -0.24 -6.35 8.51 -15.06 -0.13 -6.48 16 17 H 0.08 2.15 7.04 -52.48 -0.37 1.78 16 18 C 0.04 1.04 5.31 -17.43 -0.09 0.95 16 19 N -0.90 -27.20 13.97 55.49 0.78 -26.42 16 20 Si 0.88 21.47 24.95 -169.99 -4.24 17.23 16 21 H -0.29 -7.01 6.61 56.52 0.37 -6.63 16 22 H -0.30 -7.70 7.11 56.52 0.40 -7.29 16 23 H -0.27 -6.26 7.11 56.52 0.40 -5.86 16 24 C 0.13 2.59 4.57 -4.04 -0.02 2.57 16 25 C 0.06 1.06 7.39 37.16 0.27 1.33 16 26 O -0.54 -10.67 13.39 -35.23 -0.47 -11.14 16 27 C -0.14 -2.21 5.30 -26.61 -0.14 -2.35 16 28 C 0.11 1.54 6.42 -3.71 -0.02 1.51 16 29 H 0.08 0.71 8.14 -51.93 -0.42 0.28 16 30 H 0.07 0.67 7.20 -51.93 -0.37 0.30 16 31 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 32 H 0.41 1.82 9.06 45.56 0.41 2.23 16 33 H 0.08 0.97 5.71 -51.93 -0.30 0.68 16 34 H 0.07 0.73 8.14 -51.93 -0.42 0.30 16 35 H 0.07 1.17 8.14 -51.93 -0.42 0.75 16 36 H 0.08 1.42 7.71 -51.93 -0.40 1.02 16 37 H 0.05 0.78 7.88 -51.93 -0.41 0.37 16 38 H 0.26 7.51 8.31 -40.82 -0.34 7.17 16 39 H 0.07 1.55 3.40 -51.93 -0.18 1.38 16 40 H 0.05 0.85 8.06 -51.93 -0.42 0.43 16 41 H 0.02 0.35 8.14 -51.93 -0.42 -0.08 16 42 H 0.03 0.49 8.14 -51.93 -0.42 0.07 16 43 H 0.35 5.04 9.12 45.56 0.42 5.45 16 44 H 0.07 1.18 8.14 -51.93 -0.42 0.75 16 45 H 0.07 1.40 7.06 -51.93 -0.37 1.03 16 46 H 0.07 0.76 8.14 -51.93 -0.42 0.33 16 47 H 0.09 1.26 7.03 -51.93 -0.37 0.89 16 LS Contribution 376.70 15.07 5.68 5.68 Total: -1.00 -36.03 376.70 -6.70 -42.72 By element: Atomic # 1 Polarization: 14.90 SS G_CDS: -5.26 Total: 9.64 kcal Atomic # 6 Polarization: 12.87 SS G_CDS: -1.99 Total: 10.87 kcal Atomic # 7 Polarization: -60.82 SS G_CDS: -0.26 Total: -61.08 kcal Atomic # 8 Polarization: -24.44 SS G_CDS: -0.62 Total: -25.06 kcal Atomic # 14 Polarization: 21.47 SS G_CDS: -4.24 Total: 17.23 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -36.03 -6.70 -42.72 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001098399234.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.783 kcal (2) G-P(sol) polarization free energy of solvation -36.026 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.243 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.697 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.722 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.939 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds