Wall clock time and date at job start Tue Mar 31 2020 21:43:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 N 1.29948 * 126.28991 * 2 1 4 4 O 1.21296 * 110.25347 * 179.73205 * 3 2 1 5 5 C 1.33636 * 109.81311 * 0.46325 * 4 3 2 6 6 C 1.50697 * 126.55381 * 179.80519 * 5 4 3 7 7 C 1.53003 * 109.47348 * 269.69146 * 6 5 4 8 8 C 1.52999 * 109.47209 * 180.02562 * 7 6 5 9 9 C 1.50701 * 109.46577 * 180.02562 * 8 7 6 10 10 O 1.21276 * 120.00695 * 359.97438 * 9 8 7 11 11 N 1.34777 * 119.99567 * 179.97438 * 9 8 7 12 12 C 1.46499 * 120.00091 * 179.97438 * 11 9 8 13 13 H 1.09003 * 109.45801 * 34.97258 * 12 11 9 14 14 C 1.53041 * 109.46226 * 275.00159 * 12 11 9 15 15 C 1.53191 * 109.31418 * 178.62862 * 14 12 11 16 16 N 1.46930 * 108.77847 * 54.62849 * 15 14 12 17 17 C 1.36939 * 120.62571 * 126.41363 * 16 15 14 18 18 H 1.07997 * 120.00039 * 332.60834 * 17 16 15 19 19 C 1.38812 * 119.99576 * 152.61328 * 17 16 15 20 20 N 1.31624 * 119.99666 * 159.34101 * 19 17 16 21 21 Si 1.86801 * 120.00048 * 339.34275 * 19 17 16 22 22 H 1.48498 * 109.47313 * 92.94451 * 21 19 17 23 23 H 1.48506 * 109.47015 * 212.94727 * 21 19 17 24 24 H 1.48499 * 109.47228 * 332.94195 * 21 19 17 25 25 C 1.46919 * 118.73886 * 306.39834 * 16 15 14 26 26 C 1.53039 * 109.45122 * 154.93414 * 12 11 9 27 27 H 1.08995 * 109.50356 * 301.33594 * 26 12 11 28 28 O 1.42910 * 109.49594 * 61.43304 * 26 12 11 29 29 N 1.31135 * 106.89780 * 359.54163 * 5 4 3 30 30 H 1.09002 * 109.46892 * 269.97305 * 1 2 3 31 31 H 1.08991 * 109.47337 * 29.97154 * 1 2 3 32 32 H 1.08996 * 109.46928 * 149.97794 * 1 2 3 33 33 H 1.09007 * 109.47333 * 149.69071 * 6 5 4 34 34 H 1.08995 * 109.47152 * 29.69186 * 6 5 4 35 35 H 1.08998 * 109.47226 * 59.99541 * 7 6 5 36 36 H 1.09002 * 109.46476 * 299.99796 * 7 6 5 37 37 H 1.08994 * 109.47225 * 59.99868 * 8 7 6 38 38 H 1.09002 * 109.47051 * 299.99218 * 8 7 6 39 39 H 0.96999 * 120.00111 * 359.97438 * 11 9 8 40 40 H 1.09002 * 109.49295 * 298.57831 * 14 12 11 41 41 H 1.08997 * 109.49806 * 58.67105 * 14 12 11 42 42 H 1.09001 * 109.59005 * 174.42172 * 15 14 12 43 43 H 1.09003 * 109.58668 * 294.84750 * 15 14 12 44 44 H 0.97001 * 119.99554 * 179.97438 * 20 19 17 45 45 H 1.08999 * 109.58450 * 293.81302 * 25 16 15 46 46 H 1.09007 * 109.70103 * 173.46279 * 25 16 15 47 47 H 0.96699 * 114.00201 * 180.02562 * 28 26 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2761 1.0474 0.0000 4 8 3.4419 0.7124 0.0053 5 6 3.5299 -0.6211 -0.0008 6 6 4.7970 -1.4369 -0.0014 7 6 5.2254 -1.7126 -1.4441 8 6 6.5115 -2.5414 -1.4447 9 6 6.9336 -2.8124 -2.8657 10 8 6.2710 -2.3853 -3.7873 11 7 8.0478 -3.5296 -3.1125 12 6 8.4580 -3.7936 -4.4939 13 1 8.2108 -2.9338 -5.1167 14 6 7.7229 -5.0300 -5.0167 15 6 8.1284 -5.2828 -6.4722 16 7 9.5929 -5.3752 -6.5459 17 6 10.1952 -6.4613 -7.1229 18 1 9.6936 -7.4178 -7.1276 19 6 11.4504 -6.3329 -7.7016 20 7 12.2020 -7.3976 -7.8862 21 14 12.0728 -4.6491 -8.2182 22 1 12.8644 -4.0531 -7.1121 23 1 12.9306 -4.7866 -9.4227 24 1 10.9183 -3.7690 -8.5308 25 6 10.3988 -4.2802 -5.9893 26 6 9.9680 -4.0386 -4.5392 27 1 10.4900 -3.1668 -4.1450 28 8 10.2890 -5.1852 -3.7490 29 7 2.3030 -1.0841 -0.0005 30 1 -0.3633 -0.0005 1.0277 31 1 -0.3633 0.8902 -0.5133 32 1 -0.3633 -0.8898 -0.5142 33 1 4.6209 -2.3821 0.5123 34 1 5.5844 -0.8854 0.5123 35 1 5.4015 -0.7676 -1.9578 36 1 4.4379 -2.2642 -1.9578 37 1 6.3349 -3.4865 -0.9312 38 1 7.2991 -1.9903 -0.9309 39 1 8.5780 -3.8710 -2.3755 40 1 7.9890 -5.8952 -4.4094 41 1 6.6471 -4.8637 -4.9623 42 1 7.6854 -6.2167 -6.8180 43 1 7.7825 -4.4587 -7.0963 44 1 13.0789 -7.3078 -8.2909 45 1 10.2381 -3.3744 -6.5740 46 1 11.4546 -4.5502 -6.0166 47 1 11.2318 -5.3996 -3.7318 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001100113083.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:43:49 Heat of formation + Delta-G solvation = -2.107609 kcal Electronic energy + Delta-G solvation = -29043.450676 eV Core-core repulsion = 24844.168160 eV Total energy + Delta-G solvation = -4199.282516 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -45.92542 -40.02049 -38.33137 -36.54804 -35.73969 -35.03123 -34.43701 -32.90788 -32.11982 -30.33009 -29.70472 -29.43733 -28.37119 -25.22063 -24.10098 -23.25298 -22.83101 -21.71637 -21.39516 -20.23516 -19.62219 -18.43658 -17.85750 -17.46726 -16.92373 -16.43123 -16.14209 -15.66566 -15.49689 -15.06069 -14.67042 -14.35141 -14.18945 -14.10518 -14.01210 -13.83020 -13.43246 -13.35186 -12.93098 -12.85445 -12.67268 -12.45891 -12.40101 -12.22537 -12.00800 -11.71812 -11.63908 -11.48812 -11.38312 -11.17524 -11.00762 -10.73795 -10.47477 -10.31056 -10.22441 -10.11649 -9.79644 -9.52988 -9.42258 -8.81876 -8.65552 -7.00576 -5.98576 -3.33299 0.78548 1.85740 2.42350 2.66701 3.17728 3.22040 3.31757 3.43944 3.45913 3.67858 4.35810 4.43026 4.46248 4.50176 4.59748 4.72516 4.89108 4.91995 4.94705 4.98538 5.06405 5.08734 5.15192 5.22950 5.30088 5.32028 5.32882 5.51313 5.60383 5.61431 5.70747 5.72178 5.87276 5.96067 6.07975 6.22545 6.27247 6.36675 6.44893 6.63230 6.71081 6.94736 7.61580 7.81931 7.88915 8.07764 8.29267 8.29883 8.89363 9.67277 10.04550 11.17473 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.031071 B = 0.001857 C = 0.001842 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 900.939331 B =15070.810247 C =15198.825339 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 C 0.167 3.833 3 N -0.388 5.388 4 O 0.076 5.924 5 C 0.190 3.810 6 C -0.029 4.029 7 C -0.102 4.102 8 C -0.139 4.139 9 C 0.508 3.492 10 O -0.544 6.544 11 N -0.719 5.719 12 C 0.161 3.839 13 H 0.091 0.909 14 C -0.138 4.138 15 C 0.151 3.849 16 N -0.595 5.595 17 C -0.251 4.251 18 H 0.086 0.914 19 C 0.021 3.979 20 N -0.907 5.907 21 Si 0.879 3.121 22 H -0.291 1.291 23 H -0.302 1.302 24 H -0.271 1.271 25 C 0.098 3.902 26 C 0.082 3.918 27 H 0.048 0.952 28 O -0.554 6.554 29 N -0.482 5.482 30 H 0.088 0.912 31 H 0.086 0.914 32 H 0.092 0.908 33 H 0.113 0.887 34 H 0.105 0.895 35 H 0.079 0.921 36 H 0.081 0.919 37 H 0.098 0.902 38 H 0.097 0.903 39 H 0.403 0.597 40 H 0.074 0.926 41 H 0.057 0.943 42 H 0.067 0.933 43 H 0.024 0.976 44 H 0.262 0.738 45 H 0.033 0.967 46 H 0.080 0.920 47 H 0.379 0.621 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.161 13.231 19.810 27.713 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.105 4.105 3 N -0.097 5.097 4 O 0.019 5.981 5 C -0.031 4.031 6 C -0.068 4.068 7 C -0.141 4.141 8 C -0.179 4.179 9 C 0.294 3.706 10 O -0.422 6.422 11 N -0.369 5.369 12 C 0.057 3.943 13 H 0.109 0.891 14 C -0.178 4.178 15 C 0.024 3.976 16 N -0.318 5.318 17 C -0.379 4.379 18 H 0.104 0.896 19 C -0.178 4.178 20 N -0.551 5.551 21 Si 0.710 3.290 22 H -0.219 1.219 23 H -0.230 1.230 24 H -0.196 1.196 25 C -0.029 4.029 26 C 0.021 3.979 27 H 0.066 0.934 28 O -0.359 6.359 29 N -0.216 5.216 30 H 0.107 0.893 31 H 0.105 0.895 32 H 0.111 0.889 33 H 0.131 0.869 34 H 0.123 0.877 35 H 0.098 0.902 36 H 0.100 0.900 37 H 0.117 0.883 38 H 0.115 0.885 39 H 0.238 0.762 40 H 0.093 0.907 41 H 0.075 0.925 42 H 0.085 0.915 43 H 0.042 0.958 44 H 0.072 0.928 45 H 0.051 0.949 46 H 0.098 0.902 47 H 0.226 0.774 Dipole moment (debyes) X Y Z Total from point charges -15.789 13.954 19.143 28.468 hybrid contribution 1.590 0.730 -0.104 1.753 sum -14.199 14.683 19.039 27.923 Atomic orbital electron populations 1.20146 0.82922 1.04804 1.04269 1.25938 1.00674 0.83518 1.00418 1.74642 0.89417 1.23966 1.21709 1.85289 1.22356 1.24849 1.65642 1.28813 0.97065 0.82168 0.95051 1.20342 0.87943 0.98334 1.00167 1.21326 0.97414 1.01844 0.93512 1.21618 0.98749 1.02477 0.95065 1.20567 0.80752 0.77960 0.91293 1.90719 1.53307 1.51698 1.46473 1.46175 1.26792 1.54412 1.09561 1.20962 0.92488 0.98741 0.82115 0.89135 1.22298 0.98511 0.97645 0.99324 1.20926 0.84425 0.99690 0.92542 1.44200 1.00190 1.20960 1.66491 1.18921 1.01012 0.87999 1.30005 0.89630 1.25279 0.96976 0.96418 0.99101 1.69843 1.10158 1.28529 1.46535 0.87023 0.78253 0.86047 0.77709 1.21939 1.23027 1.19572 1.22043 0.97163 0.92261 0.91443 1.22554 0.94112 0.87628 0.93636 0.93443 1.86380 1.30470 1.48274 1.70777 1.71922 0.99769 1.29391 1.20562 0.89326 0.89481 0.88923 0.86910 0.87686 0.90232 0.89994 0.88339 0.88476 0.76232 0.90747 0.92455 0.91468 0.95783 0.92802 0.94917 0.90220 0.77408 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.39 10.51 36.00 0.38 -0.01 16 2 C 0.17 1.69 8.22 -156.37 -1.28 0.40 16 3 N -0.39 -4.36 12.16 30.90 0.38 -3.98 16 4 O 0.08 0.78 11.31 18.12 0.20 0.98 16 5 C 0.19 1.67 7.77 -13.06 -0.10 1.57 16 6 C -0.03 -0.15 5.84 -27.88 -0.16 -0.31 16 7 C -0.10 -0.76 4.49 -26.73 -0.12 -0.88 16 8 C -0.14 -0.94 5.70 -27.88 -0.16 -1.10 16 9 C 0.51 6.12 7.79 -10.98 -0.09 6.04 16 10 O -0.54 -8.88 15.64 5.56 0.09 -8.79 16 11 N -0.72 -8.83 5.05 -53.77 -0.27 -9.10 16 12 C 0.16 2.53 2.20 -67.89 -0.15 2.38 16 13 H 0.09 1.54 7.58 -51.93 -0.39 1.15 16 14 C -0.14 -2.39 5.51 -26.61 -0.15 -2.53 16 15 C 0.15 3.01 6.52 -3.71 -0.02 2.99 16 16 N -0.60 -13.68 2.71 -172.32 -0.47 -14.14 16 17 C -0.25 -6.82 10.04 -15.06 -0.15 -6.97 16 18 H 0.09 2.52 8.06 -52.49 -0.42 2.10 16 19 C 0.02 0.58 5.23 -17.43 -0.09 0.49 16 20 N -0.91 -27.10 13.97 55.49 0.78 -26.33 16 21 Si 0.88 21.59 24.35 -169.99 -4.14 17.45 16 22 H -0.29 -6.75 6.62 56.52 0.37 -6.38 16 23 H -0.30 -7.64 7.11 56.52 0.40 -7.24 16 24 H -0.27 -6.60 6.63 56.52 0.37 -6.23 16 25 C 0.10 2.00 3.84 -3.71 -0.01 1.98 16 26 C 0.08 1.33 3.38 -26.61 -0.09 1.24 16 27 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 28 O -0.55 -8.90 12.08 -35.23 -0.43 -9.33 16 29 N -0.48 -5.08 11.55 -9.87 -0.11 -5.19 16 30 H 0.09 0.40 8.14 -51.93 -0.42 -0.02 16 31 H 0.09 0.44 8.14 -51.93 -0.42 0.02 16 32 H 0.09 0.49 8.14 -51.93 -0.42 0.07 16 33 H 0.11 0.43 8.14 -51.93 -0.42 0.00 16 34 H 0.10 0.27 8.14 -51.93 -0.42 -0.15 16 35 H 0.08 0.69 8.10 -51.93 -0.42 0.27 16 36 H 0.08 0.79 8.10 -51.93 -0.42 0.37 16 37 H 0.10 0.49 8.14 -51.93 -0.42 0.07 16 38 H 0.10 0.42 8.14 -51.93 -0.42 -0.01 16 39 H 0.40 4.11 8.25 -40.82 -0.34 3.78 16 40 H 0.07 1.38 7.61 -51.93 -0.40 0.99 16 41 H 0.06 0.97 8.14 -51.93 -0.42 0.54 16 42 H 0.07 1.35 7.93 -51.93 -0.41 0.94 16 43 H 0.02 0.48 8.14 -51.93 -0.42 0.05 16 44 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 45 H 0.03 0.67 7.07 -51.93 -0.37 0.30 16 46 H 0.08 1.74 4.50 -51.92 -0.23 1.51 16 47 H 0.38 5.32 9.08 45.56 0.41 5.74 16 LS Contribution 382.23 15.07 5.76 5.76 Total: -1.00 -35.36 382.23 -6.82 -42.18 By element: Atomic # 1 Polarization: 11.62 SS G_CDS: -6.41 Total: 5.21 kcal Atomic # 6 Polarization: 7.49 SS G_CDS: -2.20 Total: 5.29 kcal Atomic # 7 Polarization: -59.04 SS G_CDS: 0.30 Total: -58.74 kcal Atomic # 8 Polarization: -17.01 SS G_CDS: -0.13 Total: -17.14 kcal Atomic # 14 Polarization: 21.59 SS G_CDS: -4.14 Total: 17.45 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -35.36 -6.82 -42.18 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001100113083.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.071 kcal (2) G-P(sol) polarization free energy of solvation -35.357 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.714 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.821 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.178 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.108 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds