Wall clock time and date at job start Tue Mar 31 2020 21:43:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 N 1.29942 * 126.28812 * 2 1 4 4 O 1.21302 * 110.25302 * 180.02562 * 3 2 1 5 5 C 1.33650 * 109.80803 * 359.97438 * 4 3 2 6 6 C 1.50696 * 126.54720 * 179.97438 * 5 4 3 7 7 C 1.53001 * 109.47397 * 270.02669 * 6 5 4 8 8 C 1.53001 * 109.47231 * 180.02562 * 7 6 5 9 9 C 1.50704 * 109.47011 * 180.02562 * 8 7 6 10 10 O 1.21279 * 120.00299 * 0.02562 * 9 8 7 11 11 N 1.34774 * 119.99879 * 180.02562 * 9 8 7 12 12 C 1.46503 * 119.99770 * 180.27602 * 11 9 8 13 13 H 1.09000 * 109.46333 * 324.74747 * 12 11 9 14 14 C 1.53041 * 109.46232 * 84.72270 * 12 11 9 15 15 C 1.53191 * 109.31029 * 58.65302 * 14 12 11 16 16 N 1.46927 * 108.77777 * 54.64072 * 15 14 12 17 17 C 1.36929 * 120.63503 * 126.40987 * 16 15 14 18 18 H 1.07999 * 120.00280 * 207.67239 * 17 16 15 19 19 C 1.38819 * 120.00076 * 27.67589 * 17 16 15 20 20 N 1.31620 * 119.99874 * 17.35133 * 19 17 16 21 21 Si 1.86799 * 120.00049 * 197.35894 * 19 17 16 22 22 H 1.48498 * 109.47480 * 59.99649 * 21 19 17 23 23 H 1.48497 * 109.47238 * 179.97438 * 21 19 17 24 24 H 1.48500 * 109.46926 * 299.99394 * 21 19 17 25 25 C 1.46923 * 118.73540 * 306.38516 * 16 15 14 26 26 C 1.53048 * 109.45796 * 204.78843 * 12 11 9 27 27 H 1.09000 * 109.49577 * 181.39093 * 26 12 11 28 28 O 1.42898 * 109.49453 * 61.29743 * 26 12 11 29 29 N 1.31127 * 106.89891 * 0.23124 * 5 4 3 30 30 H 1.09001 * 109.47014 * 89.97142 * 1 2 3 31 31 H 1.09000 * 109.47204 * 209.97039 * 1 2 3 32 32 H 1.09002 * 109.46927 * 329.97359 * 1 2 3 33 33 H 1.08998 * 109.46862 * 150.03192 * 6 5 4 34 34 H 1.08996 * 109.47941 * 30.03165 * 6 5 4 35 35 H 1.09000 * 109.47180 * 60.00561 * 7 6 5 36 36 H 1.09000 * 109.47312 * 300.00224 * 7 6 5 37 37 H 1.08998 * 109.47172 * 60.00435 * 8 7 6 38 38 H 1.08999 * 109.47276 * 299.99771 * 8 7 6 39 39 H 0.97001 * 120.00585 * 359.97438 * 11 9 8 40 40 H 1.08999 * 109.49816 * 178.60719 * 14 12 11 41 41 H 1.08998 * 109.49335 * 298.66946 * 14 12 11 42 42 H 1.09000 * 109.58567 * 174.42313 * 15 14 12 43 43 H 1.08997 * 109.58903 * 294.70294 * 15 14 12 44 44 H 0.96996 * 119.99791 * 180.02562 * 20 19 17 45 45 H 1.08995 * 109.58881 * 173.39649 * 25 16 15 46 46 H 1.09004 * 109.58988 * 293.82575 * 25 16 15 47 47 H 0.96707 * 114.00078 * 180.02562 * 28 26 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2761 1.0474 0.0000 4 8 3.4419 0.7123 -0.0005 5 6 3.5299 -0.6213 -0.0003 6 6 4.7969 -1.4370 -0.0014 7 6 5.2248 -1.7129 -1.4442 8 6 6.5109 -2.5417 -1.4452 9 6 6.9327 -2.8128 -2.8664 10 8 6.2702 -2.3849 -3.7877 11 7 8.0461 -3.5308 -3.1135 12 6 8.4594 -3.7892 -4.4950 13 1 7.5760 -3.9207 -5.1199 14 6 9.2782 -2.6043 -5.0125 15 6 10.5006 -2.4013 -4.1117 16 7 11.2478 -3.6642 -4.0369 17 6 12.5840 -3.7029 -4.3335 18 1 13.0272 -4.6125 -4.7114 19 6 13.3692 -2.5731 -4.1486 20 7 12.9384 -1.5899 -3.3870 21 14 15.0369 -2.4482 -4.9807 22 1 14.8625 -2.5267 -6.4533 23 1 15.6712 -1.1532 -4.6262 24 1 15.9026 -3.5652 -4.5245 25 6 10.5341 -4.8846 -3.6372 26 6 9.3113 -5.0598 -4.5432 27 1 9.6397 -5.2391 -5.5669 28 8 8.5362 -6.1711 -4.0888 29 7 2.3030 -1.0842 -0.0047 30 1 -0.3633 0.0005 -1.0277 31 1 -0.3633 -0.8902 0.5134 32 1 -0.3633 0.8898 0.5143 33 1 4.6209 -2.3821 0.5123 34 1 5.5846 -0.8857 0.5121 35 1 5.4009 -0.7678 -1.9579 36 1 4.4372 -2.2644 -1.9576 37 1 6.3345 -3.4867 -0.9316 38 1 7.2987 -1.9905 -0.9317 39 1 8.5763 -3.8728 -2.3767 40 1 9.6069 -2.8067 -6.0318 41 1 8.6633 -1.7044 -5.0004 42 1 11.1387 -1.6236 -4.5315 43 1 10.1746 -2.1074 -3.1141 44 1 13.4868 -0.8003 -3.2580 45 1 11.1941 -5.7455 -3.7438 46 1 10.2107 -4.7958 -2.6000 47 1 9.0143 -7.0117 -4.0922 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001100113084.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:43:53 Heat of formation + Delta-G solvation = -8.229157 kcal Electronic energy + Delta-G solvation = -29314.684325 eV Core-core repulsion = 25115.136358 eV Total energy + Delta-G solvation = -4199.547967 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -45.79640 -39.88845 -38.06248 -36.40973 -35.58959 -35.41908 -34.02925 -32.73922 -31.74147 -30.31582 -29.54973 -28.82850 -28.04680 -25.37455 -24.06991 -23.12938 -22.29961 -21.86348 -21.33857 -20.36852 -18.74148 -18.30055 -17.72642 -17.20597 -16.95832 -16.49015 -15.94518 -15.56042 -15.01509 -14.96599 -14.52041 -14.33149 -14.11114 -13.91933 -13.85654 -13.58093 -13.32983 -13.23059 -12.90550 -12.74188 -12.52588 -12.35357 -12.00634 -11.96812 -11.79828 -11.67022 -11.50686 -11.26210 -11.20706 -10.96639 -10.90725 -10.69651 -10.44163 -10.23580 -10.09744 -9.98566 -9.86494 -9.50991 -9.46223 -8.61934 -8.53648 -6.81804 -5.90718 -3.34633 0.91278 1.97343 2.56626 2.95476 3.31481 3.35486 3.38357 3.38957 3.54062 3.79434 4.33319 4.48864 4.53482 4.65652 4.69620 4.91396 5.03575 5.08554 5.13197 5.24429 5.25281 5.27179 5.33601 5.37572 5.43332 5.54143 5.56173 5.63120 5.67881 5.74274 5.90108 5.94547 6.04355 6.06786 6.24132 6.41770 6.52476 6.61605 6.66484 6.94005 7.23800 7.55083 7.67894 7.87983 7.88700 7.94023 8.31981 8.56251 9.07706 9.70007 10.25124 11.17368 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.018270 B = 0.002138 C = 0.001990 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1532.191042 B =13095.497786 C =14067.320653 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 C 0.165 3.835 3 N -0.389 5.389 4 O 0.077 5.923 5 C 0.193 3.807 6 C -0.030 4.030 7 C -0.100 4.100 8 C -0.140 4.140 9 C 0.513 3.487 10 O -0.553 6.553 11 N -0.705 5.705 12 C 0.166 3.834 13 H 0.077 0.923 14 C -0.153 4.153 15 C 0.172 3.828 16 N -0.586 5.586 17 C -0.260 4.260 18 H 0.066 0.934 19 C 0.006 3.994 20 N -0.899 5.899 21 Si 0.904 3.096 22 H -0.283 1.283 23 H -0.290 1.290 24 H -0.282 1.282 25 C 0.119 3.881 26 C 0.075 3.925 27 H 0.065 0.935 28 O -0.571 6.571 29 N -0.484 5.484 30 H 0.088 0.912 31 H 0.091 0.909 32 H 0.085 0.915 33 H 0.112 0.888 34 H 0.106 0.894 35 H 0.079 0.921 36 H 0.079 0.921 37 H 0.096 0.904 38 H 0.099 0.901 39 H 0.402 0.598 40 H 0.065 0.935 41 H 0.063 0.937 42 H 0.089 0.911 43 H 0.022 0.978 44 H 0.256 0.744 45 H 0.058 0.942 46 H 0.023 0.977 47 H 0.374 0.626 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.037 -2.202 7.505 18.747 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.107 4.107 3 N -0.098 5.098 4 O 0.019 5.981 5 C -0.028 4.028 6 C -0.069 4.069 7 C -0.139 4.139 8 C -0.180 4.180 9 C 0.299 3.701 10 O -0.431 6.431 11 N -0.356 5.356 12 C 0.061 3.939 13 H 0.095 0.905 14 C -0.194 4.194 15 C 0.047 3.953 16 N -0.311 5.311 17 C -0.389 4.389 18 H 0.084 0.916 19 C -0.193 4.193 20 N -0.543 5.543 21 Si 0.734 3.266 22 H -0.209 1.209 23 H -0.216 1.216 24 H -0.208 1.208 25 C -0.008 4.008 26 C 0.014 3.986 27 H 0.083 0.917 28 O -0.375 6.375 29 N -0.219 5.219 30 H 0.107 0.893 31 H 0.109 0.891 32 H 0.104 0.896 33 H 0.130 0.870 34 H 0.125 0.875 35 H 0.098 0.902 36 H 0.098 0.902 37 H 0.114 0.886 38 H 0.118 0.882 39 H 0.238 0.762 40 H 0.084 0.916 41 H 0.081 0.919 42 H 0.107 0.893 43 H 0.040 0.960 44 H 0.066 0.934 45 H 0.077 0.923 46 H 0.040 0.960 47 H 0.220 0.780 Dipole moment (debyes) X Y Z Total from point charges -18.506 -0.768 6.955 19.785 hybrid contribution 1.817 -0.499 -0.125 1.888 sum -16.689 -1.267 6.830 18.077 Atomic orbital electron populations 1.20132 0.83004 1.04555 1.04349 1.25924 1.00631 0.83608 1.00572 1.74638 0.89451 1.23992 1.21703 1.85303 1.22278 1.24875 1.65603 1.28845 0.97055 0.82127 0.94733 1.20370 0.87932 0.98290 1.00329 1.21308 0.97363 1.01894 0.93332 1.21607 0.98770 1.02318 0.95288 1.20441 0.80503 0.77972 0.91161 1.90677 1.54265 1.51660 1.46534 1.45949 1.26202 1.54248 1.09184 1.20807 0.96819 0.93351 0.82918 0.90465 1.22588 0.98987 0.96667 1.01119 1.20784 0.89658 0.89406 0.95488 1.43994 1.05944 1.02673 1.78447 1.19107 0.83906 0.98701 1.37236 0.91640 1.25048 0.97881 0.98354 0.98048 1.70014 1.38265 1.08651 1.37326 0.86348 0.83639 0.77032 0.79596 1.20940 1.21570 1.20838 1.21530 0.92314 0.91990 0.95000 1.22754 0.91997 0.85279 0.98542 0.91689 1.86480 1.42767 1.18642 1.89638 1.71911 0.99781 1.29374 1.20798 0.89302 0.89050 0.89574 0.86956 0.87529 0.90200 0.90208 0.88560 0.88223 0.76224 0.91590 0.91870 0.89283 0.96015 0.93416 0.92324 0.95957 0.78010 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.43 10.51 36.01 0.38 -0.05 16 2 C 0.17 1.85 8.22 -156.37 -1.28 0.57 16 3 N -0.39 -4.88 12.16 30.90 0.38 -4.50 16 4 O 0.08 0.91 11.31 18.08 0.20 1.12 16 5 C 0.19 2.01 7.77 -13.06 -0.10 1.91 16 6 C -0.03 -0.22 5.84 -27.88 -0.16 -0.38 16 7 C -0.10 -0.97 4.49 -26.73 -0.12 -1.09 16 8 C -0.14 -1.38 5.70 -27.88 -0.16 -1.53 16 9 C 0.51 7.69 7.79 -10.98 -0.09 7.60 16 10 O -0.55 -10.28 15.65 5.56 0.09 -10.19 16 11 N -0.70 -10.90 4.16 -53.76 -0.22 -11.12 16 12 C 0.17 2.86 2.47 -67.88 -0.17 2.69 16 13 H 0.08 1.42 7.58 -51.93 -0.39 1.02 16 14 C -0.15 -2.92 5.77 -26.61 -0.15 -3.07 16 15 C 0.17 3.84 5.05 -3.71 -0.02 3.82 16 16 N -0.59 -13.40 2.99 -172.32 -0.52 -13.92 16 17 C -0.26 -6.67 9.59 -15.06 -0.14 -6.81 16 18 H 0.07 1.64 7.89 -52.49 -0.41 1.23 16 19 C 0.01 0.16 4.91 -17.43 -0.09 0.07 16 20 N -0.90 -24.76 11.19 55.49 0.62 -24.14 16 21 Si 0.90 20.77 29.59 -169.99 -5.03 15.74 16 22 H -0.28 -6.48 7.11 56.52 0.40 -6.07 16 23 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 24 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 25 C 0.12 2.19 5.84 -3.71 -0.02 2.17 16 26 C 0.08 1.22 3.36 -26.61 -0.09 1.13 16 27 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 28 O -0.57 -8.11 13.21 -35.23 -0.47 -8.58 16 29 N -0.48 -5.70 11.55 -9.87 -0.11 -5.81 16 30 H 0.09 0.53 8.14 -51.93 -0.42 0.11 16 31 H 0.09 0.52 8.14 -51.93 -0.42 0.10 16 32 H 0.09 0.49 8.14 -51.93 -0.42 0.06 16 33 H 0.11 0.63 8.14 -51.93 -0.42 0.21 16 34 H 0.11 0.54 8.14 -51.93 -0.42 0.12 16 35 H 0.08 0.90 8.10 -51.93 -0.42 0.47 16 36 H 0.08 0.91 8.10 -51.93 -0.42 0.49 16 37 H 0.10 0.73 8.14 -51.93 -0.42 0.31 16 38 H 0.10 0.84 8.14 -51.93 -0.42 0.41 16 39 H 0.40 5.84 6.87 -40.82 -0.28 5.56 16 40 H 0.07 1.25 8.14 -51.93 -0.42 0.83 16 41 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 42 H 0.09 2.28 6.04 -51.93 -0.31 1.97 16 43 H 0.02 0.50 7.74 -51.93 -0.40 0.10 16 44 H 0.26 6.88 8.31 -40.82 -0.34 6.54 16 45 H 0.06 1.04 7.93 -51.93 -0.41 0.63 16 46 H 0.02 0.41 6.64 -51.93 -0.34 0.07 16 47 H 0.37 3.75 9.08 45.56 0.41 4.16 16 LS Contribution 386.11 15.07 5.82 5.82 Total: -1.00 -33.34 386.11 -7.81 -41.15 By element: Atomic # 1 Polarization: 13.76 SS G_CDS: -6.35 Total: 7.41 kcal Atomic # 6 Polarization: 9.23 SS G_CDS: -2.22 Total: 7.02 kcal Atomic # 7 Polarization: -59.63 SS G_CDS: 0.14 Total: -59.49 kcal Atomic # 8 Polarization: -17.48 SS G_CDS: -0.17 Total: -17.65 kcal Atomic # 14 Polarization: 20.77 SS G_CDS: -5.03 Total: 15.74 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -33.34 -7.81 -41.15 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001100113084.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.923 kcal (2) G-P(sol) polarization free energy of solvation -33.345 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.422 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.807 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.152 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.229 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds