Wall clock time and date at job start Tue Mar 31 2020 21:43:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 N 1.29942 * 126.28812 * 2 1 4 4 O 1.21302 * 110.25302 * 180.02562 * 3 2 1 5 5 C 1.33650 * 109.80803 * 359.97438 * 4 3 2 6 6 C 1.50696 * 126.54720 * 179.97438 * 5 4 3 7 7 C 1.53001 * 109.47397 * 270.02669 * 6 5 4 8 8 C 1.53001 * 109.47231 * 180.02562 * 7 6 5 9 9 C 1.50704 * 109.47011 * 180.02562 * 8 7 6 10 10 O 1.21279 * 120.00299 * 0.02562 * 9 8 7 11 11 N 1.34774 * 119.99879 * 180.02562 * 9 8 7 12 12 C 1.46503 * 119.99770 * 180.27602 * 11 9 8 13 13 H 1.09000 * 109.46333 * 324.74747 * 12 11 9 14 14 C 1.53041 * 109.46232 * 84.72270 * 12 11 9 15 15 C 1.53191 * 109.31029 * 58.65302 * 14 12 11 16 16 N 1.46927 * 108.77777 * 54.64072 * 15 14 12 17 17 C 1.36929 * 120.63503 * 126.40987 * 16 15 14 18 18 H 1.07999 * 120.00280 * 207.67239 * 17 16 15 19 19 C 1.38819 * 120.00076 * 27.67589 * 17 16 15 20 20 N 1.31620 * 119.99874 * 17.35133 * 19 17 16 21 21 Si 1.86799 * 120.00049 * 197.35894 * 19 17 16 22 22 H 1.48498 * 109.47480 * 59.99649 * 21 19 17 23 23 H 1.48497 * 109.47238 * 179.97438 * 21 19 17 24 24 H 1.48500 * 109.46926 * 299.99394 * 21 19 17 25 25 C 1.46923 * 118.73540 * 306.38516 * 16 15 14 26 26 C 1.53048 * 109.45796 * 204.78843 * 12 11 9 27 27 H 1.09000 * 109.49577 * 181.39093 * 26 12 11 28 28 O 1.42898 * 109.49453 * 61.29743 * 26 12 11 29 29 N 1.31127 * 106.89891 * 0.23124 * 5 4 3 30 30 H 1.09001 * 109.47014 * 89.97142 * 1 2 3 31 31 H 1.09000 * 109.47204 * 209.97039 * 1 2 3 32 32 H 1.09002 * 109.46927 * 329.97359 * 1 2 3 33 33 H 1.08998 * 109.46862 * 150.03192 * 6 5 4 34 34 H 1.08996 * 109.47941 * 30.03165 * 6 5 4 35 35 H 1.09000 * 109.47180 * 60.00561 * 7 6 5 36 36 H 1.09000 * 109.47312 * 300.00224 * 7 6 5 37 37 H 1.08998 * 109.47172 * 60.00435 * 8 7 6 38 38 H 1.08999 * 109.47276 * 299.99771 * 8 7 6 39 39 H 0.97001 * 120.00585 * 359.97438 * 11 9 8 40 40 H 1.08999 * 109.49816 * 178.60719 * 14 12 11 41 41 H 1.08998 * 109.49335 * 298.66946 * 14 12 11 42 42 H 1.09000 * 109.58567 * 174.42313 * 15 14 12 43 43 H 1.08997 * 109.58903 * 294.70294 * 15 14 12 44 44 H 0.96996 * 119.99791 * 180.02562 * 20 19 17 45 45 H 1.08995 * 109.58881 * 173.39649 * 25 16 15 46 46 H 1.09004 * 109.58988 * 293.82575 * 25 16 15 47 47 H 0.96707 * 114.00078 * 180.02562 * 28 26 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2761 1.0474 0.0000 4 8 3.4419 0.7123 -0.0005 5 6 3.5299 -0.6213 -0.0003 6 6 4.7969 -1.4370 -0.0014 7 6 5.2248 -1.7129 -1.4442 8 6 6.5109 -2.5417 -1.4452 9 6 6.9327 -2.8128 -2.8664 10 8 6.2702 -2.3849 -3.7877 11 7 8.0461 -3.5308 -3.1135 12 6 8.4594 -3.7892 -4.4950 13 1 7.5760 -3.9207 -5.1199 14 6 9.2782 -2.6043 -5.0125 15 6 10.5006 -2.4013 -4.1117 16 7 11.2478 -3.6642 -4.0369 17 6 12.5840 -3.7029 -4.3335 18 1 13.0272 -4.6125 -4.7114 19 6 13.3692 -2.5731 -4.1486 20 7 12.9384 -1.5899 -3.3870 21 14 15.0369 -2.4482 -4.9807 22 1 14.8625 -2.5267 -6.4533 23 1 15.6712 -1.1532 -4.6262 24 1 15.9026 -3.5652 -4.5245 25 6 10.5341 -4.8846 -3.6372 26 6 9.3113 -5.0598 -4.5432 27 1 9.6397 -5.2391 -5.5669 28 8 8.5362 -6.1711 -4.0888 29 7 2.3030 -1.0842 -0.0047 30 1 -0.3633 0.0005 -1.0277 31 1 -0.3633 -0.8902 0.5134 32 1 -0.3633 0.8898 0.5143 33 1 4.6209 -2.3821 0.5123 34 1 5.5846 -0.8857 0.5121 35 1 5.4009 -0.7678 -1.9579 36 1 4.4372 -2.2644 -1.9576 37 1 6.3345 -3.4867 -0.9316 38 1 7.2987 -1.9905 -0.9317 39 1 8.5763 -3.8728 -2.3767 40 1 9.6069 -2.8067 -6.0318 41 1 8.6633 -1.7044 -5.0004 42 1 11.1387 -1.6236 -4.5315 43 1 10.1746 -2.1074 -3.1141 44 1 13.4868 -0.8003 -3.2580 45 1 11.1941 -5.7455 -3.7438 46 1 10.2107 -4.7958 -2.6000 47 1 9.0143 -7.0117 -4.0922 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001100113084.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:43:52 Heat of formation + Delta-G solvation = -34.258972 kcal Electronic energy + Delta-G solvation = -29315.813062 eV Core-core repulsion = 25115.136358 eV Total energy + Delta-G solvation = -4200.676704 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -46.62838 -41.18700 -39.40700 -37.22408 -36.91112 -36.35412 -35.50312 -33.69628 -33.34274 -31.85373 -30.37373 -30.10464 -29.03577 -27.12757 -24.97973 -24.17536 -23.72981 -23.44733 -22.13645 -21.47486 -20.24103 -19.16102 -18.84881 -18.56386 -18.08293 -17.88669 -16.91322 -16.80984 -16.68029 -16.02746 -15.80532 -15.70960 -15.36609 -15.03270 -14.81150 -14.64314 -14.49031 -14.36456 -13.94233 -13.81038 -13.59391 -13.37356 -13.35637 -13.21293 -12.99285 -12.77208 -12.70030 -12.57594 -12.33084 -12.27081 -12.20703 -12.10262 -11.95490 -11.81241 -11.71239 -11.26543 -11.00544 -10.93394 -10.74188 -10.47795 -9.93922 -8.68268 -7.87461 -5.32414 0.09733 1.16195 1.48884 1.52140 1.57404 1.78820 1.82195 2.35183 2.51266 2.70229 3.07082 3.18571 3.28928 3.69606 3.74113 3.83774 3.94567 4.03556 4.09232 4.14926 4.27662 4.38441 4.41336 4.49641 4.54758 4.55007 4.58770 4.67656 4.72163 4.73867 4.86039 4.89899 4.91757 5.00234 5.06723 5.07936 5.15991 5.18154 5.29239 5.44679 5.61402 5.66017 5.73508 6.37642 6.68369 6.91476 7.12174 7.14557 7.38236 7.83866 8.34358 9.18324 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.018270 B = 0.002138 C = 0.001990 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1532.191042 B =13095.497786 C =14067.320653 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 C 0.159 3.841 3 N -0.416 5.416 4 O 0.063 5.937 5 C 0.195 3.805 6 C -0.022 4.022 7 C -0.093 4.093 8 C -0.129 4.129 9 C 0.505 3.495 10 O -0.594 6.594 11 N -0.703 5.703 12 C 0.168 3.832 13 H 0.068 0.932 14 C -0.140 4.140 15 C 0.185 3.815 16 N -0.601 5.601 17 C -0.264 4.264 18 H 0.071 0.929 19 C -0.046 4.046 20 N -0.929 5.929 21 Si 0.962 3.038 22 H -0.282 1.282 23 H -0.298 1.298 24 H -0.274 1.274 25 C 0.120 3.880 26 C 0.095 3.905 27 H 0.064 0.936 28 O -0.570 6.570 29 N -0.506 5.506 30 H 0.099 0.901 31 H 0.104 0.896 32 H 0.098 0.902 33 H 0.137 0.863 34 H 0.135 0.865 35 H 0.058 0.942 36 H 0.059 0.941 37 H 0.129 0.871 38 H 0.122 0.878 39 H 0.409 0.591 40 H 0.063 0.937 41 H 0.056 0.944 42 H 0.051 0.949 43 H 0.011 0.989 44 H 0.250 0.750 45 H 0.067 0.933 46 H 0.032 0.968 47 H 0.395 0.605 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.427 -4.030 8.559 19.829 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.113 4.113 3 N -0.128 5.128 4 O 0.008 5.992 5 C -0.025 4.025 6 C -0.061 4.061 7 C -0.132 4.132 8 C -0.169 4.169 9 C 0.293 3.707 10 O -0.475 6.475 11 N -0.354 5.354 12 C 0.063 3.937 13 H 0.086 0.914 14 C -0.180 4.180 15 C 0.059 3.941 16 N -0.326 5.326 17 C -0.394 4.394 18 H 0.088 0.912 19 C -0.242 4.242 20 N -0.574 5.574 21 Si 0.791 3.209 22 H -0.208 1.208 23 H -0.224 1.224 24 H -0.200 1.200 25 C -0.006 4.006 26 C 0.034 3.966 27 H 0.082 0.918 28 O -0.377 6.377 29 N -0.241 5.241 30 H 0.117 0.883 31 H 0.123 0.877 32 H 0.117 0.883 33 H 0.155 0.845 34 H 0.153 0.847 35 H 0.077 0.923 36 H 0.078 0.922 37 H 0.147 0.853 38 H 0.140 0.860 39 H 0.245 0.755 40 H 0.082 0.918 41 H 0.075 0.925 42 H 0.070 0.930 43 H 0.029 0.971 44 H 0.059 0.941 45 H 0.086 0.914 46 H 0.049 0.951 47 H 0.245 0.755 Dipole moment (debyes) X Y Z Total from point charges -18.880 -2.657 8.025 20.686 hybrid contribution 1.885 -0.013 -0.473 1.944 sum -16.995 -2.671 7.552 18.788 Atomic orbital electron populations 1.20343 0.80504 1.05848 1.05370 1.26677 1.02226 0.83181 0.99232 1.74626 0.89863 1.24972 1.23355 1.85263 1.22217 1.25610 1.66100 1.29485 0.97833 0.81856 0.93302 1.20531 0.87301 0.99373 0.98859 1.21165 0.96849 1.00526 0.94650 1.21647 0.99060 1.04226 0.91938 1.21387 0.79618 0.76683 0.92964 1.90661 1.55401 1.53086 1.48401 1.45940 1.26552 1.54430 1.08504 1.20612 0.96107 0.93033 0.83985 0.91370 1.22383 0.97733 0.97570 1.00356 1.20479 0.89866 0.88612 0.95094 1.44151 1.05538 1.04004 1.78913 1.19443 0.85110 0.98669 1.36145 0.91172 1.25728 1.01011 0.98469 0.99032 1.70149 1.39301 1.09008 1.38970 0.85420 0.80307 0.76614 0.78555 1.20788 1.22418 1.19953 1.21667 0.92888 0.90287 0.95797 1.22332 0.90735 0.85641 0.97898 0.91817 1.86450 1.42643 1.19217 1.89357 1.71937 1.00457 1.29877 1.21833 0.88278 0.87693 0.88320 0.84509 0.84724 0.92337 0.92223 0.85256 0.86002 0.75460 0.91825 0.92543 0.93049 0.97117 0.94138 0.91445 0.95051 0.75511 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.80 10.51 71.24 0.75 -0.05 16 2 C 0.16 3.49 8.22 138.46 1.14 4.63 16 3 N -0.42 -10.44 12.16 -60.31 -0.73 -11.17 16 4 O 0.06 1.47 11.31 74.77 0.85 2.32 16 5 C 0.20 3.89 7.77 88.38 0.69 4.58 16 6 C -0.02 -0.27 5.84 29.85 0.17 -0.09 16 7 C -0.09 -1.68 4.49 30.59 0.14 -1.55 16 8 C -0.13 -2.21 5.70 29.85 0.17 -2.04 16 9 C 0.50 14.56 7.79 87.66 0.68 15.25 16 10 O -0.59 -22.17 15.65 -3.03 -0.05 -22.22 16 11 N -0.70 -20.72 4.16 -442.39 -1.84 -22.56 16 12 C 0.17 5.64 2.47 45.02 0.11 5.75 16 13 H 0.07 2.46 7.58 -2.39 -0.02 2.44 16 14 C -0.14 -5.37 5.77 30.67 0.18 -5.19 16 15 C 0.19 8.37 5.05 86.36 0.44 8.80 16 16 N -0.60 -27.14 2.99 -699.11 -2.09 -29.23 16 17 C -0.26 -13.38 9.59 84.04 0.81 -12.57 16 18 H 0.07 3.43 7.89 -2.91 -0.02 3.41 16 19 C -0.05 -2.45 4.91 84.86 0.42 -2.03 16 20 N -0.93 -52.04 11.19 21.65 0.24 -51.80 16 21 Si 0.96 42.85 29.59 68.60 2.03 44.88 16 22 H -0.28 -12.33 7.11 99.48 0.71 -11.63 16 23 H -0.30 -13.52 7.11 99.48 0.71 -12.82 16 24 H -0.27 -11.71 7.11 99.48 0.71 -11.00 16 25 C 0.12 4.17 5.84 86.36 0.50 4.68 16 26 C 0.10 2.89 3.36 30.68 0.10 2.99 16 27 H 0.06 1.99 8.14 -2.39 -0.02 1.97 16 28 O -0.57 -14.41 13.21 -148.98 -1.97 -16.37 16 29 N -0.51 -11.51 11.55 -303.18 -3.50 -15.01 16 30 H 0.10 1.06 8.14 -2.39 -0.02 1.04 16 31 H 0.10 1.03 8.14 -2.39 -0.02 1.01 16 32 H 0.10 0.99 8.14 -2.39 -0.02 0.97 16 33 H 0.14 1.04 8.14 -2.39 -0.02 1.02 16 34 H 0.13 0.91 8.14 -2.39 -0.02 0.89 16 35 H 0.06 1.31 8.10 -2.39 -0.02 1.29 16 36 H 0.06 1.33 8.10 -2.39 -0.02 1.31 16 37 H 0.13 1.43 8.14 -2.39 -0.02 1.41 16 38 H 0.12 1.63 8.14 -2.39 -0.02 1.61 16 39 H 0.41 10.94 6.87 -92.71 -0.64 10.31 16 40 H 0.06 2.43 8.14 -2.39 -0.02 2.41 16 41 H 0.06 2.21 8.14 -2.39 -0.02 2.19 16 42 H 0.05 2.72 6.04 -2.39 -0.01 2.70 16 43 H 0.01 0.50 7.74 -2.39 -0.02 0.48 16 44 H 0.25 13.73 8.31 -92.71 -0.77 12.96 16 45 H 0.07 2.23 7.93 -2.39 -0.02 2.21 16 46 H 0.03 1.06 6.64 -2.39 -0.02 1.05 16 47 H 0.40 6.46 9.08 -74.05 -0.67 5.78 16 Total: -1.00 -73.92 386.11 -1.08 -74.99 By element: Atomic # 1 Polarization: 23.33 SS G_CDS: -0.30 Total: 23.03 kcal Atomic # 6 Polarization: 16.86 SS G_CDS: 6.29 Total: 23.15 kcal Atomic # 7 Polarization: -121.85 SS G_CDS: -7.93 Total: -129.78 kcal Atomic # 8 Polarization: -35.11 SS G_CDS: -1.17 Total: -36.28 kcal Atomic # 14 Polarization: 42.85 SS G_CDS: 2.03 Total: 44.88 kcal Total: -73.92 -1.08 -74.99 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001100113084.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.735 kcal (2) G-P(sol) polarization free energy of solvation -73.918 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.183 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.076 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.994 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.259 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds