Wall clock time and date at job start Tue Mar 31 2020 21:43:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 N 1.29951 * 126.28386 * 2 1 4 4 O 1.21301 * 110.24856 * 179.72242 * 3 2 1 5 5 C 1.33640 * 109.81003 * 0.47279 * 4 3 2 6 6 C 1.50703 * 126.55104 * 179.79672 * 5 4 3 7 7 C 1.52995 * 109.47207 * 269.68846 * 6 5 4 8 8 C 1.53004 * 109.47269 * 179.97438 * 7 6 5 9 9 C 1.50697 * 109.47269 * 180.02562 * 8 7 6 10 10 O 1.21286 * 120.00135 * 359.97438 * 9 8 7 11 11 N 1.34774 * 120.00211 * 180.02562 * 9 8 7 12 12 C 1.46502 * 120.00386 * 179.97438 * 11 9 8 13 13 H 1.09002 * 109.45571 * 325.00048 * 12 11 9 14 14 C 1.53037 * 109.45710 * 84.97148 * 12 11 9 15 15 C 1.53191 * 109.30956 * 181.39922 * 14 12 11 16 16 N 1.46926 * 108.76747 * 305.34640 * 15 14 12 17 17 C 1.36938 * 120.62829 * 233.59614 * 16 15 14 18 18 H 1.08008 * 119.99730 * 152.31069 * 17 16 15 19 19 C 1.38812 * 120.00200 * 332.30201 * 17 16 15 20 20 N 1.31620 * 120.00133 * 342.60601 * 19 17 16 21 21 Si 1.86800 * 119.99816 * 162.60328 * 19 17 16 22 22 H 1.48498 * 109.47178 * 94.35404 * 21 19 17 23 23 H 1.48500 * 109.46945 * 214.35293 * 21 19 17 24 24 H 1.48500 * 109.47106 * 334.34823 * 21 19 17 25 25 C 1.46927 * 118.73839 * 53.61755 * 16 15 14 26 26 C 1.53042 * 109.46026 * 205.02694 * 12 11 9 27 27 H 1.08998 * 109.49669 * 298.56503 * 26 12 11 28 28 O 1.42900 * 109.49442 * 58.63194 * 26 12 11 29 29 N 1.31130 * 106.90001 * 359.53804 * 5 4 3 30 30 H 1.09000 * 109.47360 * 269.96934 * 1 2 3 31 31 H 1.09003 * 109.47605 * 29.97353 * 1 2 3 32 32 H 1.09005 * 109.47202 * 149.97438 * 1 2 3 33 33 H 1.08997 * 109.47184 * 149.68416 * 6 5 4 34 34 H 1.09002 * 109.46795 * 29.68724 * 6 5 4 35 35 H 1.09006 * 109.47382 * 59.99879 * 7 6 5 36 36 H 1.08996 * 109.47411 * 300.00013 * 7 6 5 37 37 H 1.09002 * 109.46968 * 300.00021 * 8 7 6 38 38 H 1.08997 * 109.46950 * 59.99675 * 8 7 6 39 39 H 0.97007 * 119.99572 * 359.97438 * 11 9 8 40 40 H 1.08998 * 109.50070 * 301.34105 * 14 12 11 41 41 H 1.09003 * 109.49795 * 61.43897 * 14 12 11 42 42 H 1.09003 * 109.58808 * 185.56362 * 15 14 12 43 43 H 1.09002 * 109.60036 * 65.13791 * 15 14 12 44 44 H 0.96992 * 119.99947 * 179.97438 * 20 19 17 45 45 H 1.09002 * 109.58298 * 186.60851 * 25 16 15 46 46 H 1.08992 * 109.70748 * 66.24711 * 25 16 15 47 47 H 0.96703 * 113.99818 * 179.97438 * 28 26 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2760 1.0475 0.0000 4 8 3.4418 0.7125 0.0055 5 6 3.5298 -0.6210 -0.0007 6 6 4.7970 -1.4368 -0.0013 7 6 5.2253 -1.7125 -1.4439 8 6 6.5122 -2.5403 -1.4445 9 6 6.9344 -2.8113 -2.8655 10 8 6.2712 -2.3849 -3.7871 11 7 8.0485 -3.5284 -3.1123 12 6 8.4588 -3.7924 -4.4937 13 1 7.5739 -3.9238 -5.1165 14 6 9.2793 -2.6111 -5.0164 15 6 9.6768 -2.8751 -6.4721 16 7 10.3682 -4.1694 -6.5461 17 6 11.6061 -4.2671 -7.1233 18 1 12.2897 -5.0414 -6.8073 19 6 11.9825 -3.3712 -8.1146 20 7 11.0686 -2.6605 -8.7408 21 14 13.7859 -3.1742 -8.5597 22 1 14.1113 -4.0565 -9.7090 23 1 14.0530 -1.7610 -8.9294 24 1 14.6271 -3.5485 -7.3945 25 6 9.7059 -5.3569 -5.9893 26 6 9.3078 -5.0649 -4.5391 27 1 10.2053 -4.9252 -3.9366 28 8 8.5517 -6.1614 -4.0215 29 7 2.3030 -1.0840 -0.0005 30 1 -0.3634 -0.0005 1.0276 31 1 -0.3634 0.8902 -0.5134 32 1 -0.3634 -0.8898 -0.5142 33 1 4.6209 -2.3819 0.5124 34 1 5.5844 -0.8853 0.5125 35 1 5.4015 -0.7674 -1.9577 36 1 4.4380 -2.2640 -1.9577 37 1 7.2994 -1.9884 -0.9309 38 1 6.3365 -3.4853 -0.9307 39 1 8.5788 -3.8698 -2.3752 40 1 8.6822 -1.7008 -4.9619 41 1 10.1771 -2.4947 -4.4093 42 1 10.3430 -2.0847 -6.8181 43 1 8.7835 -2.9018 -7.0961 44 1 11.3316 -2.0343 -9.4332 45 1 10.3913 -6.2040 -6.0166 46 1 8.8151 -5.5885 -6.5732 47 1 9.0288 -7.0026 -4.0205 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001100113085.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:43:57 Heat of formation + Delta-G solvation = -10.175604 kcal Electronic energy + Delta-G solvation = -28853.950273 eV Core-core repulsion = 24654.317902 eV Total energy + Delta-G solvation = -4199.632371 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -45.86272 -39.84501 -38.07134 -36.48092 -35.65719 -35.42019 -34.29181 -32.82341 -31.93795 -30.20661 -29.58769 -28.83121 -28.11669 -25.23490 -24.07067 -23.15048 -22.35651 -21.75767 -21.32344 -20.15270 -19.44174 -18.37130 -17.77724 -17.28182 -16.79993 -16.52784 -16.05660 -15.92377 -15.30917 -14.83971 -14.55349 -14.13986 -13.97605 -13.95369 -13.92888 -13.52626 -13.39398 -13.20000 -12.96320 -12.80829 -12.57377 -12.34237 -12.24132 -11.93750 -11.90378 -11.60013 -11.57201 -11.32485 -11.13159 -11.08133 -10.88896 -10.69124 -10.34230 -10.29744 -10.16117 -9.96921 -9.83010 -9.72976 -9.41597 -8.75764 -8.46873 -6.79404 -5.87003 -3.31000 0.84747 1.91533 2.48992 2.83322 3.27236 3.32549 3.40135 3.41264 3.42368 3.73683 4.34364 4.44009 4.48085 4.56432 4.58459 4.80865 4.98993 5.00333 5.04368 5.15371 5.16575 5.27996 5.29286 5.30945 5.39986 5.47045 5.53795 5.56975 5.67440 5.75490 5.79557 5.95129 5.97264 6.10072 6.30756 6.46118 6.51443 6.64717 6.75113 6.86144 7.26931 7.58495 7.70805 7.73761 7.87892 7.89079 8.35434 8.44970 9.10973 9.73553 10.29334 11.21585 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.021872 B = 0.001877 C = 0.001799 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1279.852770 B =14911.033780 C =15557.941705 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 C 0.167 3.833 3 N -0.388 5.388 4 O 0.077 5.923 5 C 0.190 3.810 6 C -0.029 4.029 7 C -0.102 4.102 8 C -0.138 4.138 9 C 0.509 3.491 10 O -0.543 6.543 11 N -0.717 5.717 12 C 0.162 3.838 13 H 0.087 0.913 14 C -0.146 4.146 15 C 0.170 3.830 16 N -0.588 5.588 17 C -0.260 4.260 18 H 0.067 0.933 19 C 0.005 3.995 20 N -0.899 5.899 21 Si 0.904 3.096 22 H -0.287 1.287 23 H -0.289 1.289 24 H -0.279 1.279 25 C 0.120 3.880 26 C 0.080 3.920 27 H 0.056 0.944 28 O -0.571 6.571 29 N -0.483 5.483 30 H 0.088 0.912 31 H 0.086 0.914 32 H 0.092 0.908 33 H 0.112 0.888 34 H 0.105 0.895 35 H 0.080 0.920 36 H 0.081 0.919 37 H 0.096 0.904 38 H 0.096 0.904 39 H 0.396 0.604 40 H 0.062 0.938 41 H 0.058 0.942 42 H 0.093 0.907 43 H 0.024 0.976 44 H 0.256 0.744 45 H 0.059 0.941 46 H 0.028 0.972 47 H 0.374 0.626 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.334 0.593 21.143 24.485 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.106 4.106 3 N -0.097 5.097 4 O 0.019 5.981 5 C -0.030 4.030 6 C -0.068 4.068 7 C -0.141 4.141 8 C -0.178 4.178 9 C 0.295 3.705 10 O -0.420 6.420 11 N -0.366 5.366 12 C 0.058 3.942 13 H 0.105 0.895 14 C -0.186 4.186 15 C 0.044 3.956 16 N -0.312 5.312 17 C -0.389 4.389 18 H 0.085 0.915 19 C -0.194 4.194 20 N -0.542 5.542 21 Si 0.733 3.267 22 H -0.214 1.214 23 H -0.215 1.215 24 H -0.204 1.204 25 C -0.007 4.007 26 C 0.019 3.981 27 H 0.074 0.926 28 O -0.376 6.376 29 N -0.217 5.217 30 H 0.106 0.894 31 H 0.105 0.895 32 H 0.110 0.890 33 H 0.130 0.870 34 H 0.123 0.877 35 H 0.098 0.902 36 H 0.100 0.900 37 H 0.115 0.885 38 H 0.115 0.885 39 H 0.229 0.771 40 H 0.080 0.920 41 H 0.076 0.924 42 H 0.111 0.889 43 H 0.042 0.958 44 H 0.066 0.934 45 H 0.078 0.922 46 H 0.046 0.954 47 H 0.220 0.780 Dipole moment (debyes) X Y Z Total from point charges -13.889 1.999 20.395 24.756 hybrid contribution 1.775 -0.513 -0.047 1.848 sum -12.115 1.486 20.349 23.728 Atomic orbital electron populations 1.20142 0.82954 1.04794 1.04221 1.25930 1.00658 0.83544 1.00476 1.74646 0.89422 1.23962 1.21682 1.85294 1.22338 1.24844 1.65613 1.28821 0.97061 0.82169 0.94967 1.20346 0.87925 0.98256 1.00232 1.21329 0.97430 1.01960 0.93418 1.21609 0.98702 1.02295 0.95221 1.20489 0.80595 0.78233 0.91179 1.90730 1.53675 1.51127 1.46450 1.46103 1.26619 1.54611 1.09293 1.20993 0.97930 0.93354 0.81907 0.89525 1.22591 0.98555 0.96323 1.01143 1.20838 0.96297 0.89332 0.89109 1.44043 1.18044 1.01414 1.67671 1.19153 0.89682 1.15791 1.14300 0.91545 1.25074 0.97800 1.00745 0.95817 1.70037 1.31428 1.28186 1.24562 0.86272 0.84881 0.77269 0.78269 1.21369 1.21463 1.20385 1.21522 0.96571 0.91725 0.90913 1.22772 0.92586 0.85667 0.97050 0.92617 1.86478 1.45109 1.19693 1.86291 1.71912 0.99776 1.29400 1.20645 0.89363 0.89482 0.88953 0.86979 0.87686 0.90152 0.90035 0.88536 0.88523 0.77065 0.91959 0.92371 0.88866 0.95835 0.93424 0.92210 0.95367 0.78006 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.42 10.51 36.00 0.38 -0.04 16 2 C 0.17 1.78 8.22 -156.37 -1.28 0.50 16 3 N -0.39 -4.63 12.16 30.90 0.38 -4.25 16 4 O 0.08 0.84 11.31 18.11 0.20 1.05 16 5 C 0.19 1.82 7.77 -13.06 -0.10 1.72 16 6 C -0.03 -0.17 5.84 -27.88 -0.16 -0.33 16 7 C -0.10 -0.88 4.49 -26.73 -0.12 -1.00 16 8 C -0.14 -1.09 5.70 -27.88 -0.16 -1.25 16 9 C 0.51 6.96 7.79 -10.99 -0.09 6.87 16 10 O -0.54 -9.97 15.64 5.55 0.09 -9.88 16 11 N -0.72 -9.71 4.92 -53.76 -0.26 -9.98 16 12 C 0.16 2.81 2.12 -67.89 -0.14 2.67 16 13 H 0.09 1.77 7.58 -51.93 -0.39 1.38 16 14 C -0.15 -2.79 5.65 -26.61 -0.15 -2.94 16 15 C 0.17 4.03 5.31 -3.71 -0.02 4.01 16 16 N -0.59 -14.18 2.99 -172.32 -0.52 -14.69 16 17 C -0.26 -6.86 9.58 -15.06 -0.14 -7.01 16 18 H 0.07 1.70 7.89 -52.48 -0.41 1.29 16 19 C 0.00 0.13 4.91 -17.43 -0.09 0.05 16 20 N -0.90 -25.67 11.19 55.49 0.62 -25.05 16 21 Si 0.90 21.06 29.59 -169.99 -5.03 16.03 16 22 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 23 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 24 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 25 C 0.12 2.40 6.14 -3.71 -0.02 2.38 16 26 C 0.08 1.31 3.14 -26.61 -0.08 1.23 16 27 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 28 O -0.57 -8.13 13.16 -35.23 -0.46 -8.59 16 29 N -0.48 -5.39 11.55 -9.87 -0.11 -5.50 16 30 H 0.09 0.44 8.14 -51.93 -0.42 0.02 16 31 H 0.09 0.49 8.14 -51.93 -0.42 0.07 16 32 H 0.09 0.53 8.14 -51.93 -0.42 0.11 16 33 H 0.11 0.50 8.14 -51.93 -0.42 0.07 16 34 H 0.10 0.36 8.14 -51.93 -0.42 -0.07 16 35 H 0.08 0.81 8.10 -51.93 -0.42 0.39 16 36 H 0.08 0.87 8.10 -51.93 -0.42 0.45 16 37 H 0.10 0.52 8.14 -51.93 -0.42 0.10 16 38 H 0.10 0.56 8.14 -51.93 -0.42 0.14 16 39 H 0.40 4.20 8.60 -40.82 -0.35 3.85 16 40 H 0.06 1.20 8.14 -51.93 -0.42 0.77 16 41 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 42 H 0.09 2.45 6.04 -51.93 -0.31 2.14 16 43 H 0.02 0.60 8.14 -51.93 -0.42 0.18 16 44 H 0.26 7.06 8.31 -40.82 -0.34 6.72 16 45 H 0.06 1.12 7.93 -51.93 -0.41 0.71 16 46 H 0.03 0.60 8.14 -51.93 -0.42 0.18 16 47 H 0.37 3.76 9.08 45.56 0.41 4.17 16 LS Contribution 390.34 15.07 5.88 5.88 Total: -1.00 -35.06 390.34 -7.92 -42.98 By element: Atomic # 1 Polarization: 11.68 SS G_CDS: -6.52 Total: 5.16 kcal Atomic # 6 Polarization: 9.04 SS G_CDS: -2.19 Total: 6.85 kcal Atomic # 7 Polarization: -59.57 SS G_CDS: 0.10 Total: -59.47 kcal Atomic # 8 Polarization: -17.26 SS G_CDS: -0.17 Total: -17.43 kcal Atomic # 14 Polarization: 21.06 SS G_CDS: -5.03 Total: 16.03 kcal Total LS contribution 5.88 Total: 5.88 kcal Total: -35.06 -7.92 -42.98 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001100113085.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.809 kcal (2) G-P(sol) polarization free energy of solvation -35.063 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.254 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.922 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.984 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.176 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds