Wall clock time and date at job start Tue Mar 31 2020 21:43:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 N 1.29951 * 126.28386 * 2 1 4 4 O 1.21301 * 110.24856 * 179.72242 * 3 2 1 5 5 C 1.33640 * 109.81003 * 0.47279 * 4 3 2 6 6 C 1.50703 * 126.55104 * 179.79672 * 5 4 3 7 7 C 1.52995 * 109.47207 * 269.68846 * 6 5 4 8 8 C 1.53004 * 109.47269 * 179.97438 * 7 6 5 9 9 C 1.50697 * 109.47269 * 180.02562 * 8 7 6 10 10 O 1.21286 * 120.00135 * 359.97438 * 9 8 7 11 11 N 1.34774 * 120.00211 * 180.02562 * 9 8 7 12 12 C 1.46502 * 120.00386 * 179.97438 * 11 9 8 13 13 H 1.09002 * 109.45571 * 325.00048 * 12 11 9 14 14 C 1.53037 * 109.45710 * 84.97148 * 12 11 9 15 15 C 1.53191 * 109.30956 * 181.39922 * 14 12 11 16 16 N 1.46926 * 108.76747 * 305.34640 * 15 14 12 17 17 C 1.36938 * 120.62829 * 233.59614 * 16 15 14 18 18 H 1.08008 * 119.99730 * 152.31069 * 17 16 15 19 19 C 1.38812 * 120.00200 * 332.30201 * 17 16 15 20 20 N 1.31620 * 120.00133 * 342.60601 * 19 17 16 21 21 Si 1.86800 * 119.99816 * 162.60328 * 19 17 16 22 22 H 1.48498 * 109.47178 * 94.35404 * 21 19 17 23 23 H 1.48500 * 109.46945 * 214.35293 * 21 19 17 24 24 H 1.48500 * 109.47106 * 334.34823 * 21 19 17 25 25 C 1.46927 * 118.73839 * 53.61755 * 16 15 14 26 26 C 1.53042 * 109.46026 * 205.02694 * 12 11 9 27 27 H 1.08998 * 109.49669 * 298.56503 * 26 12 11 28 28 O 1.42900 * 109.49442 * 58.63194 * 26 12 11 29 29 N 1.31130 * 106.90001 * 359.53804 * 5 4 3 30 30 H 1.09000 * 109.47360 * 269.96934 * 1 2 3 31 31 H 1.09003 * 109.47605 * 29.97353 * 1 2 3 32 32 H 1.09005 * 109.47202 * 149.97438 * 1 2 3 33 33 H 1.08997 * 109.47184 * 149.68416 * 6 5 4 34 34 H 1.09002 * 109.46795 * 29.68724 * 6 5 4 35 35 H 1.09006 * 109.47382 * 59.99879 * 7 6 5 36 36 H 1.08996 * 109.47411 * 300.00013 * 7 6 5 37 37 H 1.09002 * 109.46968 * 300.00021 * 8 7 6 38 38 H 1.08997 * 109.46950 * 59.99675 * 8 7 6 39 39 H 0.97007 * 119.99572 * 359.97438 * 11 9 8 40 40 H 1.08998 * 109.50070 * 301.34105 * 14 12 11 41 41 H 1.09003 * 109.49795 * 61.43897 * 14 12 11 42 42 H 1.09003 * 109.58808 * 185.56362 * 15 14 12 43 43 H 1.09002 * 109.60036 * 65.13791 * 15 14 12 44 44 H 0.96992 * 119.99947 * 179.97438 * 20 19 17 45 45 H 1.09002 * 109.58298 * 186.60851 * 25 16 15 46 46 H 1.08992 * 109.70748 * 66.24711 * 25 16 15 47 47 H 0.96703 * 113.99818 * 179.97438 * 28 26 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2760 1.0475 0.0000 4 8 3.4418 0.7125 0.0055 5 6 3.5298 -0.6210 -0.0007 6 6 4.7970 -1.4368 -0.0013 7 6 5.2253 -1.7125 -1.4439 8 6 6.5122 -2.5403 -1.4445 9 6 6.9344 -2.8113 -2.8655 10 8 6.2712 -2.3849 -3.7871 11 7 8.0485 -3.5284 -3.1123 12 6 8.4588 -3.7924 -4.4937 13 1 7.5739 -3.9238 -5.1165 14 6 9.2793 -2.6111 -5.0164 15 6 9.6768 -2.8751 -6.4721 16 7 10.3682 -4.1694 -6.5461 17 6 11.6061 -4.2671 -7.1233 18 1 12.2897 -5.0414 -6.8073 19 6 11.9825 -3.3712 -8.1146 20 7 11.0686 -2.6605 -8.7408 21 14 13.7859 -3.1742 -8.5597 22 1 14.1113 -4.0565 -9.7090 23 1 14.0530 -1.7610 -8.9294 24 1 14.6271 -3.5485 -7.3945 25 6 9.7059 -5.3569 -5.9893 26 6 9.3078 -5.0649 -4.5391 27 1 10.2053 -4.9252 -3.9366 28 8 8.5517 -6.1614 -4.0215 29 7 2.3030 -1.0840 -0.0005 30 1 -0.3634 -0.0005 1.0276 31 1 -0.3634 0.8902 -0.5134 32 1 -0.3634 -0.8898 -0.5142 33 1 4.6209 -2.3819 0.5124 34 1 5.5844 -0.8853 0.5125 35 1 5.4015 -0.7674 -1.9577 36 1 4.4380 -2.2640 -1.9577 37 1 7.2994 -1.9884 -0.9309 38 1 6.3365 -3.4853 -0.9307 39 1 8.5788 -3.8698 -2.3752 40 1 8.6822 -1.7008 -4.9619 41 1 10.1771 -2.4947 -4.4093 42 1 10.3430 -2.0847 -6.8181 43 1 8.7835 -2.9018 -7.0961 44 1 11.3316 -2.0343 -9.4332 45 1 10.3913 -6.2040 -6.0166 46 1 8.8151 -5.5885 -6.5732 47 1 9.0288 -7.0026 -4.0205 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001100113085.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:43:57 Heat of formation + Delta-G solvation = -39.136900 kcal Electronic energy + Delta-G solvation = -28855.206129 eV Core-core repulsion = 24654.317902 eV Total energy + Delta-G solvation = -4200.888227 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -46.63445 -41.06042 -39.45475 -37.23014 -36.95676 -36.37510 -35.65206 -33.85181 -33.46783 -31.77924 -30.38861 -30.12126 -29.10100 -26.95051 -24.96984 -24.25136 -23.81339 -23.16172 -22.03436 -21.39025 -20.89182 -19.16849 -18.95823 -18.52009 -17.98464 -17.86723 -17.29780 -16.81038 -16.69689 -16.10893 -15.68518 -15.45052 -15.43054 -14.98246 -14.84605 -14.59517 -14.49701 -14.46109 -13.93594 -13.86652 -13.62377 -13.44319 -13.35787 -13.26289 -12.97223 -12.76255 -12.70781 -12.58305 -12.35391 -12.26557 -12.10499 -12.09266 -12.05712 -11.87225 -11.69992 -11.36174 -11.07125 -10.93192 -10.73617 -10.55658 -9.95087 -8.76777 -7.90484 -5.37857 0.10340 1.15970 1.48181 1.50015 1.60006 1.78113 1.83008 2.29345 2.49409 2.70409 3.06625 3.15331 3.27051 3.64171 3.74003 3.84285 3.91314 4.04371 4.09169 4.13860 4.25088 4.37263 4.41476 4.49378 4.54436 4.54987 4.58590 4.67761 4.72730 4.75635 4.85401 4.87752 4.90690 5.00922 5.04836 5.06659 5.13334 5.17057 5.30994 5.38311 5.58116 5.60781 5.65813 6.33542 6.70471 6.91136 7.09481 7.12623 7.42379 7.78111 8.30743 9.16880 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.021872 B = 0.001877 C = 0.001799 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1279.852770 B =14911.033780 C =15557.941705 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 C 0.158 3.842 3 N -0.416 5.416 4 O 0.065 5.935 5 C 0.193 3.807 6 C -0.020 4.020 7 C -0.098 4.098 8 C -0.123 4.123 9 C 0.500 3.500 10 O -0.599 6.599 11 N -0.704 5.704 12 C 0.169 3.831 13 H 0.048 0.952 14 C -0.127 4.127 15 C 0.178 3.822 16 N -0.603 5.603 17 C -0.264 4.264 18 H 0.078 0.922 19 C -0.053 4.053 20 N -0.938 5.938 21 Si 0.971 3.029 22 H -0.287 1.287 23 H -0.296 1.296 24 H -0.262 1.262 25 C 0.115 3.885 26 C 0.104 3.896 27 H 0.077 0.923 28 O -0.570 6.570 29 N -0.509 5.509 30 H 0.106 0.894 31 H 0.094 0.906 32 H 0.099 0.901 33 H 0.137 0.863 34 H 0.141 0.859 35 H 0.057 0.943 36 H 0.052 0.948 37 H 0.136 0.864 38 H 0.132 0.868 39 H 0.416 0.584 40 H 0.055 0.945 41 H 0.073 0.927 42 H 0.062 0.938 43 H -0.014 1.014 44 H 0.250 0.750 45 H 0.075 0.925 46 H 0.007 0.993 47 H 0.396 0.604 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.099 -0.866 24.712 27.104 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.114 4.114 3 N -0.128 5.128 4 O 0.010 5.990 5 C -0.027 4.027 6 C -0.058 4.058 7 C -0.137 4.137 8 C -0.162 4.162 9 C 0.289 3.711 10 O -0.480 6.480 11 N -0.355 5.355 12 C 0.063 3.937 13 H 0.066 0.934 14 C -0.167 4.167 15 C 0.052 3.948 16 N -0.327 5.327 17 C -0.394 4.394 18 H 0.096 0.904 19 C -0.248 4.248 20 N -0.584 5.584 21 Si 0.799 3.201 22 H -0.214 1.214 23 H -0.222 1.222 24 H -0.187 1.187 25 C -0.011 4.011 26 C 0.043 3.957 27 H 0.095 0.905 28 O -0.377 6.377 29 N -0.243 5.243 30 H 0.125 0.875 31 H 0.113 0.887 32 H 0.118 0.882 33 H 0.155 0.845 34 H 0.159 0.841 35 H 0.076 0.924 36 H 0.071 0.929 37 H 0.154 0.846 38 H 0.149 0.851 39 H 0.253 0.747 40 H 0.074 0.926 41 H 0.091 0.909 42 H 0.080 0.920 43 H 0.005 0.995 44 H 0.059 0.941 45 H 0.094 0.906 46 H 0.025 0.975 47 H 0.246 0.754 Dipole moment (debyes) X Y Z Total from point charges -12.622 0.476 24.036 27.153 hybrid contribution 1.311 -0.154 -1.199 1.783 sum -11.311 0.321 22.838 25.487 Atomic orbital electron populations 1.20336 0.80672 1.05527 1.05613 1.26644 1.02193 0.83219 0.99351 1.74629 0.89927 1.24931 1.23317 1.85250 1.22119 1.25610 1.66041 1.29583 0.97935 0.81890 0.93279 1.20547 0.87220 0.99356 0.98667 1.21207 0.97184 1.00623 0.94733 1.21646 0.99006 1.04357 0.91206 1.21619 0.79588 0.76718 0.93185 1.90722 1.55271 1.53141 1.48841 1.45875 1.27041 1.54616 1.08007 1.20555 0.96148 0.93254 0.83735 0.93371 1.22291 0.99252 0.97058 0.98132 1.20559 0.93967 0.88839 0.91477 1.44252 1.17935 1.02647 1.67903 1.19584 0.90692 1.15469 1.13671 0.90412 1.25903 1.01693 1.00995 0.96224 1.70215 1.33424 1.29252 1.25491 0.85211 0.80201 0.76493 0.78212 1.21399 1.22234 1.18676 1.21714 0.95782 0.90769 0.92870 1.22278 0.92978 0.85852 0.94618 0.90540 1.86449 1.45317 1.20414 1.85534 1.71933 1.00613 1.29917 1.21841 0.87535 0.88709 0.88200 0.84523 0.84123 0.92376 0.92946 0.84596 0.85051 0.74651 0.92639 0.90878 0.91960 0.99543 0.94073 0.90633 0.97462 0.75413 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.79 10.51 71.24 0.75 -0.04 16 2 C 0.16 3.34 8.22 138.46 1.14 4.48 16 3 N -0.42 -9.95 12.16 -60.32 -0.73 -10.68 16 4 O 0.06 1.40 11.31 74.86 0.85 2.25 16 5 C 0.19 3.47 7.77 88.38 0.69 4.16 16 6 C -0.02 -0.17 5.84 29.85 0.17 0.00 16 7 C -0.10 -1.51 4.49 30.59 0.14 -1.37 16 8 C -0.12 -1.47 5.70 29.85 0.17 -1.30 16 9 C 0.50 12.86 7.79 87.66 0.68 13.54 16 10 O -0.60 -22.52 15.64 -3.05 -0.05 -22.57 16 11 N -0.70 -17.38 4.92 -442.40 -2.18 -19.55 16 12 C 0.17 5.76 2.12 45.02 0.10 5.85 16 13 H 0.05 2.04 7.58 -2.39 -0.02 2.02 16 14 C -0.13 -4.91 5.65 30.67 0.17 -4.74 16 15 C 0.18 8.81 5.31 86.36 0.46 9.27 16 16 N -0.60 -29.44 2.99 -699.09 -2.09 -31.53 16 17 C -0.26 -13.94 9.58 84.03 0.81 -13.13 16 18 H 0.08 3.86 7.89 -2.91 -0.02 3.84 16 19 C -0.05 -2.89 4.91 84.86 0.42 -2.48 16 20 N -0.94 -55.74 11.19 21.65 0.24 -55.50 16 21 Si 0.97 43.60 29.59 68.60 2.03 45.63 16 22 H -0.29 -12.80 7.11 99.48 0.71 -12.09 16 23 H -0.30 -13.50 7.11 99.48 0.71 -12.79 16 24 H -0.26 -10.98 7.11 99.48 0.71 -10.27 16 25 C 0.12 4.53 6.14 86.36 0.53 5.06 16 26 C 0.10 3.17 3.14 30.67 0.10 3.27 16 27 H 0.08 2.11 8.14 -2.39 -0.02 2.09 16 28 O -0.57 -14.39 13.16 -148.98 -1.96 -16.36 16 29 N -0.51 -11.00 11.55 -303.20 -3.50 -14.51 16 30 H 0.11 0.92 8.14 -2.39 -0.02 0.90 16 31 H 0.09 1.01 8.14 -2.39 -0.02 0.99 16 32 H 0.10 1.07 8.14 -2.38 -0.02 1.05 16 33 H 0.14 0.60 8.14 -2.39 -0.02 0.58 16 34 H 0.14 0.29 8.14 -2.39 -0.02 0.27 16 35 H 0.06 1.15 8.10 -2.38 -0.02 1.13 16 36 H 0.05 1.11 8.10 -2.39 -0.02 1.09 16 37 H 0.14 0.68 8.14 -2.39 -0.02 0.66 16 38 H 0.13 0.79 8.14 -2.39 -0.02 0.77 16 39 H 0.42 6.99 8.60 -92.70 -0.80 6.19 16 40 H 0.05 2.20 8.14 -2.39 -0.02 2.18 16 41 H 0.07 2.61 8.14 -2.39 -0.02 2.59 16 42 H 0.06 3.45 6.04 -2.39 -0.01 3.44 16 43 H -0.01 -0.75 8.14 -2.39 -0.02 -0.77 16 44 H 0.25 14.43 8.31 -92.71 -0.77 13.66 16 45 H 0.08 2.69 7.93 -2.39 -0.02 2.67 16 46 H 0.01 0.32 8.14 -2.39 -0.02 0.30 16 47 H 0.40 6.38 9.08 -74.06 -0.67 5.71 16 Total: -1.00 -82.50 390.34 -1.55 -84.05 By element: Atomic # 1 Polarization: 16.66 SS G_CDS: -0.47 Total: 16.19 kcal Atomic # 6 Polarization: 16.26 SS G_CDS: 6.31 Total: 22.57 kcal Atomic # 7 Polarization: -123.51 SS G_CDS: -8.26 Total: -131.77 kcal Atomic # 8 Polarization: -35.52 SS G_CDS: -1.16 Total: -36.68 kcal Atomic # 14 Polarization: 43.60 SS G_CDS: 2.03 Total: 45.63 kcal Total: -82.50 -1.55 -84.05 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001100113085.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.913 kcal (2) G-P(sol) polarization free energy of solvation -82.503 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.590 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.547 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.050 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.137 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds