Wall clock time and date at job start Tue Mar 31 2020 21:44:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 N 1.29947 * 126.29010 * 2 1 4 4 O 1.21296 * 110.25361 * 180.02562 * 3 2 1 5 5 C 1.33647 * 109.81031 * 359.97438 * 4 3 2 6 6 C 1.50698 * 126.54835 * 179.97438 * 5 4 3 7 7 C 1.53003 * 109.47184 * 270.02490 * 6 5 4 8 8 C 1.53003 * 109.47000 * 180.02562 * 7 6 5 9 9 C 1.50696 * 109.46893 * 180.02562 * 8 7 6 10 10 O 1.21285 * 120.00423 * 0.02562 * 9 8 7 11 11 N 1.34774 * 120.00077 * 180.02562 * 9 8 7 12 12 C 1.46505 * 120.00229 * 180.02562 * 11 9 8 13 13 H 1.08988 * 109.45791 * 35.02777 * 12 11 9 14 14 C 1.53045 * 109.45853 * 275.06849 * 12 11 9 15 15 C 1.53195 * 109.31060 * 178.61208 * 14 12 11 16 16 N 1.46926 * 108.77331 * 54.63820 * 15 14 12 17 17 C 1.36941 * 120.63170 * 126.41214 * 16 15 14 18 18 H 1.08001 * 119.99840 * 207.67501 * 17 16 15 19 19 C 1.38808 * 119.99743 * 27.67008 * 17 16 15 20 20 N 1.31615 * 119.99919 * 17.36296 * 19 17 16 21 21 Si 1.86803 * 119.99890 * 197.35495 * 19 17 16 22 22 H 1.48497 * 109.46802 * 90.00462 * 21 19 17 23 23 H 1.48504 * 109.47224 * 210.00444 * 21 19 17 24 24 H 1.48498 * 109.47058 * 330.00637 * 21 19 17 25 25 C 1.46922 * 118.73983 * 306.38958 * 16 15 14 26 26 C 1.53037 * 109.45801 * 155.00430 * 12 11 9 27 27 H 1.08996 * 109.53055 * 61.41647 * 26 12 11 28 28 O 1.42899 * 109.49781 * 301.33371 * 26 12 11 29 29 N 1.31129 * 106.89663 * 0.23251 * 5 4 3 30 30 H 1.09009 * 109.46795 * 90.02060 * 1 2 3 31 31 H 1.09003 * 109.47131 * 210.01917 * 1 2 3 32 32 H 1.08998 * 109.47137 * 330.02724 * 1 2 3 33 33 H 1.09001 * 109.46749 * 150.03089 * 6 5 4 34 34 H 1.09000 * 109.47264 * 30.02987 * 6 5 4 35 35 H 1.09001 * 109.46789 * 60.00623 * 7 6 5 36 36 H 1.09000 * 109.47426 * 300.00398 * 7 6 5 37 37 H 1.09001 * 109.46889 * 60.00626 * 8 7 6 38 38 H 1.09000 * 109.47308 * 300.00412 * 8 7 6 39 39 H 0.97000 * 120.00150 * 0.02562 * 11 9 8 40 40 H 1.09001 * 109.49887 * 58.66425 * 14 12 11 41 41 H 1.08999 * 109.49702 * 298.56481 * 14 12 11 42 42 H 1.08996 * 109.58710 * 294.85089 * 15 14 12 43 43 H 1.08998 * 109.58155 * 174.42173 * 15 14 12 44 44 H 0.97007 * 119.99487 * 179.97438 * 20 19 17 45 45 H 1.08999 * 109.58997 * 173.39547 * 25 16 15 46 46 H 1.08999 * 109.59068 * 293.82144 * 25 16 15 47 47 H 0.96700 * 114.00218 * 180.16478 * 28 26 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2761 1.0474 0.0000 4 8 3.4419 0.7123 -0.0005 5 6 3.5298 -0.6212 -0.0003 6 6 4.7969 -1.4370 -0.0014 7 6 5.2247 -1.7129 -1.4442 8 6 6.5109 -2.5417 -1.4452 9 6 6.9326 -2.8128 -2.8663 10 8 6.2700 -2.3849 -3.7877 11 7 8.0460 -3.5308 -3.1135 12 6 8.4563 -3.7940 -4.4951 13 1 8.2110 -2.9331 -5.1169 14 6 7.7188 -5.0282 -5.0197 15 6 8.1241 -5.2798 -6.4754 16 7 9.5885 -5.3753 -6.5488 17 6 10.1887 -6.4618 -7.1271 18 1 11.1760 -6.7651 -6.8112 19 6 9.5282 -7.1735 -8.1191 20 7 8.5033 -6.6341 -8.7443 21 14 10.0941 -8.8965 -8.5668 22 1 9.3770 -9.8874 -7.7248 23 1 9.7994 -9.1579 -9.9986 24 1 11.5559 -9.0138 -8.3328 25 6 10.3965 -4.2826 -5.9905 26 6 9.9657 -4.0421 -4.5401 27 1 10.2092 -4.9177 -3.9384 28 8 10.6523 -2.9012 -4.0216 29 7 2.3030 -1.0841 -0.0048 30 1 -0.3633 -0.0004 -1.0278 31 1 -0.3633 -0.8898 0.5141 32 1 -0.3633 0.8902 0.5134 33 1 4.6209 -2.3821 0.5124 34 1 5.5845 -0.8855 0.5121 35 1 5.4008 -0.7678 -1.9579 36 1 4.4371 -2.2643 -1.9577 37 1 6.3344 -3.4868 -0.9316 38 1 7.2987 -1.9906 -0.9316 39 1 8.5757 -3.8734 -2.3767 40 1 6.6433 -4.8598 -4.9654 41 1 7.9829 -5.8947 -4.4135 42 1 7.7801 -4.4543 -7.0984 43 1 7.6793 -6.2124 -6.8225 44 1 8.0419 -7.1314 -9.4378 45 1 11.4510 -4.5572 -6.0177 46 1 10.2379 -3.3757 -6.5739 47 1 11.6155 -2.9878 -4.0223 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001100113086.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:44:01 Heat of formation + Delta-G solvation = -39.236629 kcal Electronic energy + Delta-G solvation = -28859.721220 eV Core-core repulsion = 24658.828668 eV Total energy + Delta-G solvation = -4200.892551 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -46.63541 -41.06194 -39.45616 -37.23158 -36.95663 -36.37595 -35.65303 -33.85300 -33.46809 -31.78159 -30.38930 -30.12132 -29.10110 -26.95293 -24.97058 -24.25504 -23.81400 -23.16283 -22.03504 -21.39205 -20.89291 -19.17005 -18.95824 -18.51880 -17.98240 -17.87525 -17.30165 -16.76650 -16.73349 -16.12279 -15.68268 -15.46305 -15.41957 -14.99837 -14.76296 -14.65877 -14.51434 -14.46631 -13.92889 -13.83333 -13.66482 -13.43017 -13.35367 -13.26621 -12.97104 -12.76775 -12.71361 -12.58386 -12.35399 -12.26909 -12.10669 -12.10144 -12.03002 -11.88397 -11.70172 -11.36416 -11.06842 -10.93258 -10.73572 -10.56135 -9.95265 -8.77275 -7.90474 -5.38161 0.10234 1.15799 1.48693 1.49976 1.59005 1.78070 1.82915 2.29224 2.49161 2.70475 3.06453 3.15225 3.26709 3.64096 3.73950 3.84272 3.91200 4.04028 4.09698 4.13551 4.24935 4.37106 4.41338 4.49638 4.53523 4.54537 4.58556 4.68556 4.71692 4.76069 4.85033 4.87864 4.90780 5.00613 5.04610 5.06558 5.13382 5.16912 5.30926 5.38045 5.57921 5.60612 5.65603 6.33381 6.70381 6.91433 7.09306 7.12575 7.42276 7.77886 8.30470 9.16736 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.020498 B = 0.001906 C = 0.001798 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1365.666349 B =14689.310881 C =15570.846641 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 C 0.158 3.842 3 N -0.415 5.415 4 O 0.065 5.935 5 C 0.193 3.807 6 C -0.020 4.020 7 C -0.098 4.098 8 C -0.123 4.123 9 C 0.500 3.500 10 O -0.599 6.599 11 N -0.704 5.704 12 C 0.169 3.831 13 H 0.049 0.951 14 C -0.127 4.127 15 C 0.178 3.822 16 N -0.603 5.603 17 C -0.264 4.264 18 H 0.079 0.921 19 C -0.053 4.053 20 N -0.938 5.938 21 Si 0.972 3.028 22 H -0.284 1.284 23 H -0.300 1.300 24 H -0.263 1.263 25 C 0.115 3.885 26 C 0.104 3.896 27 H 0.077 0.923 28 O -0.569 6.569 29 N -0.509 5.509 30 H 0.097 0.903 31 H 0.104 0.896 32 H 0.099 0.901 33 H 0.136 0.864 34 H 0.141 0.859 35 H 0.058 0.942 36 H 0.051 0.949 37 H 0.132 0.868 38 H 0.136 0.864 39 H 0.416 0.584 40 H 0.054 0.946 41 H 0.072 0.928 42 H -0.013 1.013 43 H 0.062 0.938 44 H 0.250 0.750 45 H 0.076 0.924 46 H 0.008 0.992 47 H 0.396 0.604 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.813 8.804 24.677 26.639 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.114 4.114 3 N -0.127 5.127 4 O 0.010 5.990 5 C -0.027 4.027 6 C -0.058 4.058 7 C -0.138 4.138 8 C -0.162 4.162 9 C 0.289 3.711 10 O -0.480 6.480 11 N -0.355 5.355 12 C 0.063 3.937 13 H 0.067 0.933 14 C -0.168 4.168 15 C 0.052 3.948 16 N -0.328 5.328 17 C -0.394 4.394 18 H 0.096 0.904 19 C -0.249 4.249 20 N -0.584 5.584 21 Si 0.800 3.200 22 H -0.210 1.210 23 H -0.227 1.227 24 H -0.188 1.188 25 C -0.011 4.011 26 C 0.043 3.957 27 H 0.094 0.906 28 O -0.377 6.377 29 N -0.244 5.244 30 H 0.115 0.885 31 H 0.122 0.878 32 H 0.117 0.883 33 H 0.154 0.846 34 H 0.159 0.841 35 H 0.076 0.924 36 H 0.070 0.930 37 H 0.150 0.850 38 H 0.154 0.846 39 H 0.253 0.747 40 H 0.073 0.927 41 H 0.091 0.909 42 H 0.005 0.995 43 H 0.080 0.920 44 H 0.059 0.941 45 H 0.094 0.906 46 H 0.026 0.974 47 H 0.246 0.754 Dipole moment (debyes) X Y Z Total from point charges -6.563 9.785 23.993 26.730 hybrid contribution 0.740 -1.019 -1.188 1.731 sum -5.823 8.766 22.805 25.116 Atomic orbital electron populations 1.20335 0.80708 1.05843 1.05272 1.26638 1.02183 0.83224 0.99389 1.74619 0.89929 1.24896 1.23285 1.85248 1.22101 1.25588 1.66036 1.29582 0.97914 0.81893 0.93288 1.20550 0.87227 0.99357 0.98656 1.21209 0.97186 1.00617 0.94739 1.21646 0.98988 1.04380 0.91201 1.21620 0.79776 0.76529 0.93187 1.90721 1.55013 1.53379 1.48860 1.45875 1.26979 1.54683 1.08007 1.20551 0.92683 0.96715 0.83730 0.93313 1.22295 0.98903 0.97407 0.98163 1.20555 0.83951 0.98871 0.91447 1.44254 1.01227 1.19450 1.67822 1.19591 1.02467 1.03728 1.13573 0.90376 1.25909 0.99408 1.03314 0.96234 1.70219 1.25230 1.37425 1.25507 0.85198 0.78584 0.79968 0.76267 1.21022 1.22691 1.18750 1.21724 0.96198 0.90352 0.92854 1.22274 0.90476 0.88349 0.94609 0.90559 1.86446 1.24831 1.40940 1.85463 1.71937 1.00658 1.29946 1.21812 0.88480 0.87761 0.88254 0.84565 0.84060 0.92360 0.92975 0.85007 0.84634 0.74652 0.92723 0.90949 0.99512 0.91991 0.94084 0.90595 0.97415 0.75401 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.81 10.51 71.24 0.75 -0.06 16 2 C 0.16 3.36 8.22 138.46 1.14 4.49 16 3 N -0.42 -9.88 12.16 -60.32 -0.73 -10.62 16 4 O 0.07 1.40 11.31 74.80 0.85 2.25 16 5 C 0.19 3.47 7.77 88.38 0.69 4.16 16 6 C -0.02 -0.17 5.84 29.85 0.17 0.00 16 7 C -0.10 -1.51 4.49 30.60 0.14 -1.37 16 8 C -0.12 -1.47 5.70 29.85 0.17 -1.30 16 9 C 0.50 12.86 7.79 87.66 0.68 13.55 16 10 O -0.60 -22.53 15.65 -3.04 -0.05 -22.58 16 11 N -0.70 -17.39 4.92 -442.41 -2.18 -19.56 16 12 C 0.17 5.76 2.12 45.02 0.10 5.86 16 13 H 0.05 2.06 7.58 -2.39 -0.02 2.04 16 14 C -0.13 -4.95 5.65 30.67 0.17 -4.77 16 15 C 0.18 8.84 5.31 86.36 0.46 9.30 16 16 N -0.60 -29.44 2.99 -699.10 -2.09 -31.53 16 17 C -0.26 -13.90 9.59 84.03 0.81 -13.10 16 18 H 0.08 3.88 7.89 -2.91 -0.02 3.86 16 19 C -0.05 -2.92 4.91 84.86 0.42 -2.50 16 20 N -0.94 -55.79 11.19 21.65 0.24 -55.55 16 21 Si 0.97 43.68 29.59 68.60 2.03 45.71 16 22 H -0.28 -12.50 7.11 99.48 0.71 -11.79 16 23 H -0.30 -13.83 7.11 99.48 0.71 -13.12 16 24 H -0.26 -11.04 7.11 99.48 0.71 -10.33 16 25 C 0.12 4.52 6.14 86.37 0.53 5.05 16 26 C 0.10 3.17 3.14 30.67 0.10 3.26 16 27 H 0.08 2.10 8.14 -2.39 -0.02 2.08 16 28 O -0.57 -14.26 13.16 -148.98 -1.96 -16.22 16 29 N -0.51 -11.11 11.55 -303.19 -3.50 -14.62 16 30 H 0.10 1.08 8.14 -2.38 -0.02 1.06 16 31 H 0.10 1.03 8.14 -2.39 -0.02 1.01 16 32 H 0.10 0.97 8.14 -2.39 -0.02 0.95 16 33 H 0.14 0.62 8.14 -2.39 -0.02 0.60 16 34 H 0.14 0.26 8.14 -2.39 -0.02 0.24 16 35 H 0.06 1.15 8.10 -2.39 -0.02 1.13 16 36 H 0.05 1.11 8.10 -2.39 -0.02 1.10 16 37 H 0.13 0.77 8.14 -2.39 -0.02 0.75 16 38 H 0.14 0.70 8.14 -2.39 -0.02 0.68 16 39 H 0.42 6.99 8.60 -92.71 -0.80 6.20 16 40 H 0.05 2.18 8.14 -2.39 -0.02 2.16 16 41 H 0.07 2.60 8.14 -2.39 -0.02 2.58 16 42 H -0.01 -0.74 8.14 -2.39 -0.02 -0.75 16 43 H 0.06 3.44 6.04 -2.39 -0.01 3.43 16 44 H 0.25 14.45 8.31 -92.70 -0.77 13.68 16 45 H 0.08 2.70 7.93 -2.39 -0.02 2.68 16 46 H 0.01 0.34 8.14 -2.39 -0.02 0.32 16 47 H 0.40 6.31 9.08 -74.06 -0.67 5.63 16 Total: -1.00 -82.43 390.33 -1.55 -83.98 By element: Atomic # 1 Polarization: 16.64 SS G_CDS: -0.47 Total: 16.18 kcal Atomic # 6 Polarization: 16.24 SS G_CDS: 6.31 Total: 22.56 kcal Atomic # 7 Polarization: -123.62 SS G_CDS: -8.26 Total: -131.88 kcal Atomic # 8 Polarization: -35.39 SS G_CDS: -1.16 Total: -36.55 kcal Atomic # 14 Polarization: 43.68 SS G_CDS: 2.03 Total: 45.71 kcal Total: -82.43 -1.55 -83.98 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001100113086.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.745 kcal (2) G-P(sol) polarization free energy of solvation -82.433 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.688 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.549 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.982 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.237 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds