Wall clock time and date at job start Tue Mar 31 2020 21:32:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52993 * 110.65357 * 2 1 4 4 C 1.51582 * 110.76639 * 237.18815 * 2 1 3 5 5 O 1.21236 * 127.16148 * 61.63271 * 4 2 1 6 6 N 1.34772 * 105.68488 * 241.71644 * 4 2 1 7 7 C 1.33792 * 111.64131 * 359.65239 * 6 4 2 8 8 O 1.21536 * 123.77049 * 180.23189 * 7 6 4 9 9 N 1.34530 * 112.45897 * 0.23433 * 7 6 4 10 10 C 1.46501 * 126.68903 * 179.97438 * 9 7 6 11 11 C 1.50696 * 109.47398 * 90.02620 * 10 9 7 12 12 O 1.21288 * 119.99818 * 359.97438 * 11 10 9 13 13 N 1.34775 * 120.00270 * 179.97438 * 11 10 9 14 14 C 1.46505 * 119.99847 * 179.97438 * 13 11 10 15 15 C 1.52996 * 109.46904 * 180.02562 * 14 13 11 16 16 C 1.53783 * 113.61597 * 274.13985 * 15 14 13 17 17 C 1.53948 * 87.01940 * 220.04844 * 16 15 14 18 18 N 1.46504 * 113.74250 * 139.94627 * 17 16 15 19 19 C 1.36933 * 120.00167 * 107.40491 * 18 17 16 20 20 H 1.08000 * 119.99953 * 359.97438 * 19 18 17 21 21 C 1.38818 * 120.00058 * 179.97438 * 19 18 17 22 22 N 1.31613 * 119.99860 * 179.97438 * 21 19 18 23 23 Si 1.86796 * 119.99839 * 359.97438 * 21 19 18 24 24 H 1.48506 * 109.47434 * 89.99432 * 23 21 19 25 25 H 1.48497 * 109.47400 * 209.99868 * 23 21 19 26 26 H 1.48500 * 109.47139 * 329.99812 * 23 21 19 27 27 C 1.53782 * 87.11602 * 25.36174 * 17 16 15 28 28 H 1.09001 * 109.47381 * 297.08285 * 1 2 3 29 29 H 1.08996 * 109.47255 * 57.08821 * 1 2 3 30 30 H 1.09008 * 109.46901 * 177.08247 * 1 2 3 31 31 H 1.08995 * 109.47342 * 182.91109 * 3 2 1 32 32 H 1.09001 * 109.47692 * 302.91424 * 3 2 1 33 33 H 1.09009 * 109.47191 * 62.91383 * 3 2 1 34 34 H 0.97001 * 124.18199 * 179.97438 * 6 4 2 35 35 H 1.08997 * 109.46978 * 210.02768 * 10 9 7 36 36 H 1.09003 * 109.46975 * 330.02614 * 10 9 7 37 37 H 0.97000 * 119.99805 * 0.02562 * 13 11 10 38 38 H 1.08997 * 109.47599 * 300.00313 * 14 13 11 39 39 H 1.08998 * 109.46624 * 60.00757 * 14 13 11 40 40 H 1.09005 * 112.85056 * 45.33441 * 15 14 13 41 41 H 1.08995 * 113.61583 * 334.56673 * 16 15 14 42 42 H 1.09005 * 113.61261 * 105.47007 * 16 15 14 43 43 H 1.09006 * 113.53918 * 270.80863 * 17 16 15 44 44 H 0.97004 * 119.99555 * 287.39883 * 18 17 16 45 45 H 0.97002 * 119.99839 * 180.02562 * 22 21 19 46 46 H 1.08994 * 113.61525 * 220.09269 * 27 17 16 47 47 H 1.09004 * 113.61164 * 89.18178 * 27 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0697 1.4316 0.0000 4 6 2.0675 -0.7680 -1.1912 5 8 1.8979 -0.5128 -2.3642 6 7 2.7715 -1.7948 -0.6752 7 6 2.7600 -1.7781 0.6626 8 8 3.3288 -2.6004 1.3535 9 7 2.0483 -0.7493 1.1575 10 6 1.8307 -0.4356 2.5720 11 6 2.9244 0.4805 3.0574 12 8 3.7997 0.8361 2.2968 13 7 2.9298 0.9047 4.3366 14 6 3.9933 1.7949 4.8086 15 6 3.7660 2.1226 6.2857 16 6 2.8193 3.3127 6.5141 17 6 3.7668 3.7454 7.6476 18 7 3.9863 5.1925 7.7128 19 6 3.4204 5.9261 8.7212 20 1 2.8120 5.4380 9.4682 21 6 3.6288 7.2971 8.7832 22 7 3.0845 8.0023 9.7521 23 14 4.6817 8.1412 7.4916 24 1 3.8241 8.5733 6.3588 25 1 5.3447 9.3271 8.0910 26 1 5.7135 7.1941 6.9979 27 6 4.8782 2.9867 6.9032 28 1 -0.3634 0.4679 0.9150 29 1 -0.3633 0.5584 -0.8627 30 1 -0.3633 -1.0264 -0.0523 31 1 3.1581 1.4096 -0.0522 32 1 1.6753 1.9686 -0.8627 33 1 1.7599 1.9367 0.9150 34 1 3.2337 -2.4609 -1.2078 35 1 0.8653 0.0562 2.6907 36 1 1.8432 -1.3569 3.1545 37 1 2.2299 0.6201 4.9449 38 1 4.9585 1.3025 4.6904 39 1 3.9814 2.7160 4.2258 40 1 3.5146 1.2442 6.8803 41 1 2.7888 4.0128 5.6794 42 1 1.8275 3.0214 6.8601 43 1 3.5146 3.3116 8.6153 44 1 4.5325 5.6309 7.0417 45 1 3.2298 8.9604 9.7953 46 1 5.5460 2.4328 7.5629 47 1 5.4115 3.5977 6.1749 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001100827889.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:32:07 Heat of formation + Delta-G solvation = -40.760559 kcal Electronic energy + Delta-G solvation = -29347.781671 eV Core-core repulsion = 25146.823037 eV Total energy + Delta-G solvation = -4200.958634 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -42.95739 -40.01812 -39.08467 -38.61554 -37.05635 -35.32146 -34.84347 -33.42143 -32.76904 -30.84976 -29.25791 -28.03651 -27.03562 -25.27064 -24.80756 -23.76264 -22.31444 -21.30527 -21.06699 -20.59231 -19.38305 -18.57890 -17.72677 -17.46025 -17.04617 -16.71739 -16.55071 -16.25535 -15.58221 -15.46157 -15.02393 -14.87079 -14.67990 -14.56753 -14.17017 -13.89076 -13.70903 -13.46910 -13.14375 -13.00332 -12.73919 -12.72608 -12.35986 -12.24940 -12.06754 -12.04520 -11.67571 -11.61545 -11.26290 -10.95031 -10.80480 -10.61705 -10.57704 -10.53347 -10.24363 -10.18562 -9.90439 -9.61482 -9.38817 -9.21070 -8.93980 -7.31943 -5.82779 -3.18507 1.14635 1.64320 2.32515 2.44890 2.55311 3.04420 3.33827 3.36898 3.42170 3.45916 3.99113 4.19990 4.35351 4.43042 4.54039 4.68079 4.80388 4.81367 4.89701 4.94536 5.04036 5.06958 5.22459 5.32455 5.33418 5.35784 5.40710 5.55085 5.58585 5.66502 5.72542 5.75174 5.78084 5.81975 6.09454 6.12321 6.16149 6.27746 6.42938 6.54598 6.61738 6.89025 6.91553 7.23798 7.65536 7.93353 7.95127 8.36990 9.14668 9.87451 10.07039 11.35358 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.020309 B = 0.002058 C = 0.001971 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1378.386033 B =13602.526044 C =14200.639891 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.120 3.880 3 C -0.141 4.141 4 C 0.537 3.463 5 O -0.465 6.465 6 N -0.679 5.679 7 C 0.710 3.290 8 O -0.539 6.539 9 N -0.599 5.599 10 C 0.132 3.868 11 C 0.489 3.511 12 O -0.528 6.528 13 N -0.721 5.721 14 C 0.133 3.867 15 C -0.127 4.127 16 C -0.160 4.160 17 C 0.172 3.828 18 N -0.737 5.737 19 C -0.249 4.249 20 H 0.091 0.909 21 C 0.005 3.995 22 N -0.932 5.932 23 Si 0.884 3.116 24 H -0.284 1.284 25 H -0.290 1.290 26 H -0.277 1.277 27 C -0.146 4.146 28 H 0.080 0.920 29 H 0.086 0.914 30 H 0.068 0.932 31 H 0.076 0.924 32 H 0.079 0.921 33 H 0.076 0.924 34 H 0.432 0.568 35 H 0.119 0.881 36 H 0.121 0.879 37 H 0.402 0.598 38 H 0.065 0.935 39 H 0.069 0.931 40 H 0.092 0.908 41 H 0.076 0.924 42 H 0.059 0.941 43 H 0.084 0.916 44 H 0.362 0.638 45 H 0.260 0.740 46 H 0.065 0.935 47 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.393 -21.228 -19.524 29.541 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.031 3.969 3 C -0.199 4.199 4 C 0.322 3.678 5 O -0.334 6.334 6 N -0.349 5.349 7 C 0.411 3.589 8 O -0.412 6.412 9 N -0.337 5.337 10 C 0.006 3.994 11 C 0.272 3.728 12 O -0.404 6.404 13 N -0.374 5.374 14 C 0.010 3.990 15 C -0.146 4.146 16 C -0.201 4.201 17 C 0.060 3.940 18 N -0.376 5.376 19 C -0.379 4.379 20 H 0.109 0.891 21 C -0.191 4.191 22 N -0.580 5.580 23 Si 0.714 3.286 24 H -0.211 1.211 25 H -0.217 1.217 26 H -0.203 1.203 27 C -0.186 4.186 28 H 0.099 0.901 29 H 0.105 0.895 30 H 0.087 0.913 31 H 0.095 0.905 32 H 0.098 0.902 33 H 0.095 0.905 34 H 0.274 0.726 35 H 0.137 0.863 36 H 0.139 0.861 37 H 0.236 0.764 38 H 0.083 0.917 39 H 0.087 0.913 40 H 0.110 0.890 41 H 0.095 0.905 42 H 0.078 0.922 43 H 0.102 0.898 44 H 0.195 0.805 45 H 0.070 0.930 46 H 0.084 0.916 47 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -5.727 -21.038 -19.922 29.535 hybrid contribution 0.725 0.292 -0.776 1.101 sum -5.002 -20.747 -20.699 29.730 Atomic orbital electron populations 1.21996 0.89934 1.03780 1.04690 1.21587 0.97125 0.94920 0.83245 1.21975 1.03080 0.91056 1.03805 1.20733 0.76992 0.80265 0.89785 1.90836 1.57056 1.68914 1.16558 1.44323 1.51497 1.30466 1.08584 1.15737 0.79371 0.82267 0.81573 1.91032 1.47764 1.41802 1.60640 1.47147 1.53565 1.27705 1.05320 1.21135 0.98400 1.01090 0.78772 1.21055 0.87466 0.81727 0.82503 1.90729 1.37879 1.56930 1.54815 1.45989 1.29996 1.50213 1.11182 1.21431 0.89847 0.93320 0.94373 1.22645 1.00168 0.98081 0.93710 1.23935 0.98371 0.95986 1.01843 1.21533 0.92473 0.84400 0.95558 1.42764 1.60235 1.02660 1.31989 1.19131 1.24841 0.90076 1.03841 0.89132 1.24703 1.00161 0.96267 0.97989 1.69699 1.48399 1.06618 1.33245 0.86556 0.80727 0.79412 0.81868 1.21055 1.21679 1.20273 1.23469 0.97132 0.98157 0.99792 0.90091 0.89478 0.91340 0.90455 0.90192 0.90534 0.72571 0.86327 0.86080 0.76393 0.91701 0.91280 0.89011 0.90499 0.92234 0.89831 0.80456 0.93000 0.91606 0.90373 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.61 8.80 37.16 0.33 -0.28 16 2 C 0.12 0.83 1.14 -132.10 -0.15 0.68 16 3 C -0.14 -1.07 7.56 37.15 0.28 -0.79 16 4 C 0.54 4.53 7.48 -10.55 -0.08 4.45 16 5 O -0.46 -4.93 18.02 5.60 0.10 -4.83 16 6 N -0.68 -5.44 5.70 -15.79 -0.09 -5.53 16 7 C 0.71 7.13 8.68 -88.02 -0.76 6.36 16 8 O -0.54 -7.18 17.71 5.33 0.09 -7.09 16 9 N -0.60 -4.71 2.00 -166.46 -0.33 -5.05 16 10 C 0.13 0.79 6.33 -5.20 -0.03 0.76 16 11 C 0.49 4.65 7.47 -10.99 -0.08 4.57 16 12 O -0.53 -7.20 14.69 5.55 0.08 -7.12 16 13 N -0.72 -6.02 5.56 -60.30 -0.33 -6.36 16 14 C 0.13 1.44 5.50 -4.04 -0.02 1.42 16 15 C -0.13 -1.41 3.75 -89.81 -0.34 -1.75 16 16 C -0.16 -2.26 7.45 -25.83 -0.19 -2.46 16 17 C 0.17 2.99 4.48 -67.03 -0.30 2.69 16 18 N -0.74 -16.67 5.21 -52.55 -0.27 -16.94 16 19 C -0.25 -6.81 10.45 -15.06 -0.16 -6.97 16 20 H 0.09 2.64 8.06 -52.49 -0.42 2.22 16 21 C 0.00 0.14 5.50 -17.43 -0.10 0.04 16 22 N -0.93 -28.76 13.97 55.49 0.78 -27.99 16 23 Si 0.88 21.71 27.73 -169.99 -4.71 17.00 16 24 H -0.28 -6.93 7.11 56.52 0.40 -6.53 16 25 H -0.29 -7.26 7.11 56.52 0.40 -6.86 16 26 H -0.28 -6.39 6.52 56.52 0.37 -6.03 16 27 C -0.15 -2.03 7.40 -25.92 -0.19 -2.22 16 28 H 0.08 0.22 7.43 -51.93 -0.39 -0.17 16 29 H 0.09 0.34 8.14 -51.93 -0.42 -0.09 16 30 H 0.07 0.27 8.14 -51.92 -0.42 -0.16 16 31 H 0.08 0.78 7.53 -51.93 -0.39 0.39 16 32 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 33 H 0.08 0.56 7.87 -51.92 -0.41 0.16 16 34 H 0.43 2.59 8.96 -40.82 -0.37 2.22 16 35 H 0.12 0.29 7.36 -51.93 -0.38 -0.09 16 36 H 0.12 0.60 8.03 -51.93 -0.42 0.18 16 37 H 0.40 2.20 8.47 -40.82 -0.35 1.86 16 38 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 39 H 0.07 0.86 7.88 -51.93 -0.41 0.45 16 40 H 0.09 0.88 8.14 -51.93 -0.42 0.45 16 41 H 0.08 1.18 7.92 -51.93 -0.41 0.77 16 42 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 43 H 0.08 1.48 8.10 -51.93 -0.42 1.06 16 44 H 0.36 8.13 5.79 -40.82 -0.24 7.89 16 45 H 0.26 7.65 8.31 -40.82 -0.34 7.31 16 46 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 47 H 0.08 1.13 8.08 -51.93 -0.42 0.71 16 LS Contribution 390.08 15.07 5.88 5.88 Total: -1.00 -36.77 390.08 -7.75 -44.53 By element: Atomic # 1 Polarization: 14.13 SS G_CDS: -7.14 Total: 6.98 kcal Atomic # 6 Polarization: 8.31 SS G_CDS: -1.80 Total: 6.51 kcal Atomic # 7 Polarization: -61.61 SS G_CDS: -0.26 Total: -61.87 kcal Atomic # 8 Polarization: -19.31 SS G_CDS: 0.28 Total: -19.04 kcal Atomic # 14 Polarization: 21.71 SS G_CDS: -4.71 Total: 17.00 kcal Total LS contribution 5.88 Total: 5.88 kcal Total: -36.77 -7.75 -44.53 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001100827889.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.769 kcal (2) G-P(sol) polarization free energy of solvation -36.775 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.006 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.755 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.529 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.761 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds