Wall clock time and date at job start Tue Mar 31 2020 21:32:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52993 * 110.65357 * 2 1 4 4 C 1.51582 * 110.76639 * 237.18815 * 2 1 3 5 5 O 1.21236 * 127.16148 * 61.63271 * 4 2 1 6 6 N 1.34772 * 105.68488 * 241.71644 * 4 2 1 7 7 C 1.33792 * 111.64131 * 359.65239 * 6 4 2 8 8 O 1.21536 * 123.77049 * 180.23189 * 7 6 4 9 9 N 1.34530 * 112.45897 * 0.23433 * 7 6 4 10 10 C 1.46501 * 126.68903 * 179.97438 * 9 7 6 11 11 C 1.50696 * 109.47398 * 90.02620 * 10 9 7 12 12 O 1.21288 * 119.99818 * 359.97438 * 11 10 9 13 13 N 1.34775 * 120.00270 * 179.97438 * 11 10 9 14 14 C 1.46505 * 119.99847 * 179.97438 * 13 11 10 15 15 C 1.52996 * 109.46904 * 180.02562 * 14 13 11 16 16 C 1.53783 * 113.61597 * 274.13985 * 15 14 13 17 17 C 1.53948 * 87.01940 * 220.04844 * 16 15 14 18 18 N 1.46504 * 113.74250 * 139.94627 * 17 16 15 19 19 C 1.36933 * 120.00167 * 107.40491 * 18 17 16 20 20 H 1.08000 * 119.99953 * 359.97438 * 19 18 17 21 21 C 1.38818 * 120.00058 * 179.97438 * 19 18 17 22 22 N 1.31613 * 119.99860 * 179.97438 * 21 19 18 23 23 Si 1.86796 * 119.99839 * 359.97438 * 21 19 18 24 24 H 1.48506 * 109.47434 * 89.99432 * 23 21 19 25 25 H 1.48497 * 109.47400 * 209.99868 * 23 21 19 26 26 H 1.48500 * 109.47139 * 329.99812 * 23 21 19 27 27 C 1.53782 * 87.11602 * 25.36174 * 17 16 15 28 28 H 1.09001 * 109.47381 * 297.08285 * 1 2 3 29 29 H 1.08996 * 109.47255 * 57.08821 * 1 2 3 30 30 H 1.09008 * 109.46901 * 177.08247 * 1 2 3 31 31 H 1.08995 * 109.47342 * 182.91109 * 3 2 1 32 32 H 1.09001 * 109.47692 * 302.91424 * 3 2 1 33 33 H 1.09009 * 109.47191 * 62.91383 * 3 2 1 34 34 H 0.97001 * 124.18199 * 179.97438 * 6 4 2 35 35 H 1.08997 * 109.46978 * 210.02768 * 10 9 7 36 36 H 1.09003 * 109.46975 * 330.02614 * 10 9 7 37 37 H 0.97000 * 119.99805 * 0.02562 * 13 11 10 38 38 H 1.08997 * 109.47599 * 300.00313 * 14 13 11 39 39 H 1.08998 * 109.46624 * 60.00757 * 14 13 11 40 40 H 1.09005 * 112.85056 * 45.33441 * 15 14 13 41 41 H 1.08995 * 113.61583 * 334.56673 * 16 15 14 42 42 H 1.09005 * 113.61261 * 105.47007 * 16 15 14 43 43 H 1.09006 * 113.53918 * 270.80863 * 17 16 15 44 44 H 0.97004 * 119.99555 * 287.39883 * 18 17 16 45 45 H 0.97002 * 119.99839 * 180.02562 * 22 21 19 46 46 H 1.08994 * 113.61525 * 220.09269 * 27 17 16 47 47 H 1.09004 * 113.61164 * 89.18178 * 27 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0697 1.4316 0.0000 4 6 2.0675 -0.7680 -1.1912 5 8 1.8979 -0.5128 -2.3642 6 7 2.7715 -1.7948 -0.6752 7 6 2.7600 -1.7781 0.6626 8 8 3.3288 -2.6004 1.3535 9 7 2.0483 -0.7493 1.1575 10 6 1.8307 -0.4356 2.5720 11 6 2.9244 0.4805 3.0574 12 8 3.7997 0.8361 2.2968 13 7 2.9298 0.9047 4.3366 14 6 3.9933 1.7949 4.8086 15 6 3.7660 2.1226 6.2857 16 6 2.8193 3.3127 6.5141 17 6 3.7668 3.7454 7.6476 18 7 3.9863 5.1925 7.7128 19 6 3.4204 5.9261 8.7212 20 1 2.8120 5.4380 9.4682 21 6 3.6288 7.2971 8.7832 22 7 3.0845 8.0023 9.7521 23 14 4.6817 8.1412 7.4916 24 1 3.8241 8.5733 6.3588 25 1 5.3447 9.3271 8.0910 26 1 5.7135 7.1941 6.9979 27 6 4.8782 2.9867 6.9032 28 1 -0.3634 0.4679 0.9150 29 1 -0.3633 0.5584 -0.8627 30 1 -0.3633 -1.0264 -0.0523 31 1 3.1581 1.4096 -0.0522 32 1 1.6753 1.9686 -0.8627 33 1 1.7599 1.9367 0.9150 34 1 3.2337 -2.4609 -1.2078 35 1 0.8653 0.0562 2.6907 36 1 1.8432 -1.3569 3.1545 37 1 2.2299 0.6201 4.9449 38 1 4.9585 1.3025 4.6904 39 1 3.9814 2.7160 4.2258 40 1 3.5146 1.2442 6.8803 41 1 2.7888 4.0128 5.6794 42 1 1.8275 3.0214 6.8601 43 1 3.5146 3.3116 8.6153 44 1 4.5325 5.6309 7.0417 45 1 3.2298 8.9604 9.7953 46 1 5.5460 2.4328 7.5629 47 1 5.4115 3.5977 6.1749 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001100827889.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:32:06 Heat of formation + Delta-G solvation = -70.010428 kcal Electronic energy + Delta-G solvation = -29349.050040 eV Core-core repulsion = 25146.823037 eV Total energy + Delta-G solvation = -4202.227004 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -43.62034 -40.84815 -39.95136 -39.65456 -37.78509 -36.15797 -35.88070 -34.98603 -33.37735 -32.72123 -30.07190 -28.48187 -27.99481 -26.43993 -25.57261 -25.38029 -23.15770 -22.28146 -21.92048 -21.41841 -20.66064 -19.35011 -19.24885 -18.40698 -17.74141 -17.45379 -17.30672 -17.00815 -16.69001 -16.38199 -16.10621 -15.97281 -15.68859 -15.45902 -15.30989 -14.76962 -14.67293 -14.51913 -14.13471 -13.94714 -13.70342 -13.55426 -13.22617 -13.19430 -13.17640 -13.01335 -12.81754 -12.64707 -12.58010 -12.14623 -12.00261 -11.90386 -11.69144 -11.56329 -11.55348 -11.31151 -11.21265 -11.05541 -10.84534 -10.08031 -10.01757 -9.24697 -8.01642 -5.33582 0.45289 1.04382 1.38331 1.40462 1.47907 1.63410 1.81121 1.86525 2.35406 2.48687 2.84389 3.29034 3.48765 3.61907 3.65500 3.75659 3.81597 3.87445 3.97055 4.12588 4.30915 4.32217 4.41524 4.47449 4.56023 4.59114 4.62603 4.72833 4.81415 4.82793 4.96530 4.98488 5.00029 5.06582 5.09591 5.16257 5.23598 5.26930 5.37383 5.49185 5.69803 5.80067 5.87154 6.23137 6.24517 6.59939 6.95267 7.09544 7.29078 7.88377 8.05452 9.19879 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.020309 B = 0.002058 C = 0.001971 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1378.386033 B =13602.526044 C =14200.639891 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.122 3.878 3 C -0.135 4.135 4 C 0.537 3.463 5 O -0.489 6.489 6 N -0.674 5.674 7 C 0.705 3.295 8 O -0.577 6.577 9 N -0.593 5.593 10 C 0.130 3.870 11 C 0.485 3.515 12 O -0.574 6.574 13 N -0.710 5.710 14 C 0.141 3.859 15 C -0.096 4.096 16 C -0.150 4.150 17 C 0.143 3.857 18 N -0.745 5.745 19 C -0.229 4.229 20 H 0.060 0.940 21 C -0.067 4.067 22 N -0.984 5.984 23 Si 0.952 3.048 24 H -0.279 1.279 25 H -0.298 1.298 26 H -0.254 1.254 27 C -0.140 4.140 28 H 0.104 0.896 29 H 0.091 0.909 30 H 0.073 0.927 31 H 0.046 0.954 32 H 0.090 0.910 33 H 0.082 0.918 34 H 0.438 0.562 35 H 0.165 0.835 36 H 0.138 0.862 37 H 0.419 0.581 38 H 0.057 0.943 39 H 0.053 0.947 40 H 0.120 0.880 41 H 0.066 0.934 42 H 0.071 0.929 43 H 0.077 0.923 44 H 0.364 0.636 45 H 0.257 0.743 46 H 0.077 0.923 47 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.318 -22.721 -20.741 31.623 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C 0.034 3.966 3 C -0.193 4.193 4 C 0.323 3.677 5 O -0.360 6.360 6 N -0.344 5.344 7 C 0.406 3.594 8 O -0.453 6.453 9 N -0.331 5.331 10 C 0.006 3.994 11 C 0.270 3.730 12 O -0.453 6.453 13 N -0.363 5.363 14 C 0.017 3.983 15 C -0.115 4.115 16 C -0.190 4.190 17 C 0.035 3.965 18 N -0.386 5.386 19 C -0.360 4.360 20 H 0.078 0.922 21 C -0.258 4.258 22 N -0.635 5.635 23 Si 0.780 3.220 24 H -0.206 1.206 25 H -0.225 1.225 26 H -0.178 1.178 27 C -0.180 4.180 28 H 0.123 0.877 29 H 0.110 0.890 30 H 0.092 0.908 31 H 0.065 0.935 32 H 0.109 0.891 33 H 0.101 0.899 34 H 0.281 0.719 35 H 0.182 0.818 36 H 0.156 0.844 37 H 0.257 0.743 38 H 0.076 0.924 39 H 0.071 0.929 40 H 0.138 0.862 41 H 0.085 0.915 42 H 0.089 0.911 43 H 0.095 0.905 44 H 0.197 0.803 45 H 0.065 0.935 46 H 0.096 0.904 47 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -6.681 -22.604 -21.155 31.672 hybrid contribution 0.996 0.664 -0.353 1.247 sum -5.685 -21.941 -21.508 31.246 Atomic orbital electron populations 1.22043 0.87122 1.04588 1.06180 1.21715 0.98985 0.93854 0.82018 1.21908 1.01117 0.91695 1.04597 1.21023 0.76528 0.80193 0.89923 1.90824 1.57989 1.69534 1.17643 1.44291 1.51220 1.30615 1.08247 1.15932 0.79202 0.82456 0.81794 1.91001 1.49438 1.43394 1.61474 1.47311 1.52590 1.26811 1.06338 1.21474 0.98846 1.01410 0.77692 1.21702 0.87585 0.81463 0.82205 1.90728 1.39847 1.58726 1.56028 1.45830 1.29751 1.49380 1.11344 1.21166 0.90419 0.93090 0.93674 1.22459 0.97118 0.97674 0.94229 1.23722 0.98829 0.96842 0.99603 1.21990 0.95871 0.81868 0.96804 1.42810 1.60249 1.04619 1.30896 1.19131 1.23004 0.90301 1.03566 0.92162 1.25499 1.02511 0.97235 1.00587 1.69877 1.51034 1.06688 1.35902 0.85446 0.79392 0.78125 0.79028 1.20561 1.22527 1.17822 1.23377 0.97064 0.98054 0.99457 0.87731 0.88992 0.90781 0.93470 0.89128 0.89914 0.71868 0.81795 0.84433 0.74333 0.92441 0.92911 0.86232 0.91530 0.91069 0.90534 0.80262 0.93458 0.90441 0.90792 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.70 8.80 71.98 0.63 -0.06 16 2 C 0.12 1.44 1.14 2.98 0.00 1.44 16 3 C -0.14 -1.85 7.56 71.98 0.54 -1.31 16 4 C 0.54 8.57 7.48 87.94 0.66 9.23 16 5 O -0.49 -10.11 18.02 -2.89 -0.05 -10.16 16 6 N -0.67 -10.47 5.70 -441.11 -2.52 -12.98 16 7 C 0.71 13.46 8.68 179.44 1.56 15.02 16 8 O -0.58 -15.03 17.71 -3.83 -0.07 -15.09 16 9 N -0.59 -8.03 2.00 -798.97 -1.59 -9.63 16 10 C 0.13 1.11 6.33 85.63 0.54 1.65 16 11 C 0.48 8.00 7.47 87.66 0.65 8.66 16 12 O -0.57 -15.06 14.69 -3.06 -0.04 -15.10 16 13 N -0.71 -9.51 5.56 -463.06 -2.57 -12.08 16 14 C 0.14 2.68 5.50 86.38 0.47 3.15 16 15 C -0.10 -1.82 3.75 -10.27 -0.04 -1.86 16 16 C -0.15 -3.84 7.45 31.18 0.23 -3.61 16 17 C 0.14 4.79 4.48 45.57 0.20 4.99 16 18 N -0.74 -33.11 5.21 -320.16 -1.67 -34.78 16 19 C -0.23 -12.66 10.45 84.04 0.88 -11.78 16 20 H 0.06 3.63 8.06 -2.91 -0.02 3.60 16 21 C -0.07 -3.90 5.50 84.86 0.47 -3.43 16 22 N -0.98 -62.42 13.97 21.65 0.30 -62.12 16 23 Si 0.95 45.08 27.73 68.60 1.90 46.99 16 24 H -0.28 -12.91 7.11 99.48 0.71 -12.20 16 25 H -0.30 -14.41 7.11 99.48 0.71 -13.71 16 26 H -0.25 -10.86 6.52 99.48 0.65 -10.21 16 27 C -0.14 -3.57 7.40 31.12 0.23 -3.34 16 28 H 0.10 0.05 7.43 -2.39 -0.02 0.03 16 29 H 0.09 0.43 8.14 -2.39 -0.02 0.41 16 30 H 0.07 0.33 8.14 -2.38 -0.02 0.31 16 31 H 0.05 0.95 7.53 -2.39 -0.02 0.93 16 32 H 0.09 1.02 8.14 -2.39 -0.02 1.01 16 33 H 0.08 1.03 7.87 -2.38 -0.02 1.01 16 34 H 0.44 5.24 8.96 -92.71 -0.83 4.41 16 35 H 0.16 -0.09 7.36 -2.39 -0.02 -0.11 16 36 H 0.14 0.83 8.03 -2.39 -0.02 0.81 16 37 H 0.42 2.74 8.47 -92.71 -0.79 1.95 16 38 H 0.06 1.23 8.14 -2.39 -0.02 1.21 16 39 H 0.05 1.21 7.88 -2.39 -0.02 1.19 16 40 H 0.12 1.71 8.14 -2.38 -0.02 1.70 16 41 H 0.07 1.89 7.92 -2.39 -0.02 1.87 16 42 H 0.07 1.68 8.14 -2.38 -0.02 1.66 16 43 H 0.08 2.65 8.10 -2.38 -0.02 2.63 16 44 H 0.36 15.77 5.79 -92.71 -0.54 15.24 16 45 H 0.26 15.56 8.31 -92.71 -0.77 14.79 16 46 H 0.08 1.81 8.14 -2.39 -0.02 1.79 16 47 H 0.07 1.98 8.08 -2.38 -0.02 1.96 16 Total: -1.00 -83.49 390.08 -0.46 -83.95 By element: Atomic # 1 Polarization: 23.45 SS G_CDS: -1.19 Total: 22.26 kcal Atomic # 6 Polarization: 11.71 SS G_CDS: 7.04 Total: 18.76 kcal Atomic # 7 Polarization: -123.54 SS G_CDS: -8.05 Total: -131.59 kcal Atomic # 8 Polarization: -40.19 SS G_CDS: -0.16 Total: -40.35 kcal Atomic # 14 Polarization: 45.08 SS G_CDS: 1.90 Total: 46.99 kcal Total: -83.49 -0.46 -83.95 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001100827889.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.935 kcal (2) G-P(sol) polarization free energy of solvation -83.487 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.552 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.459 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.945 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.010 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds