Wall clock time and date at job start Tue Mar 31 2020 20:31:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35770 * 117.00235 * 2 1 4 4 C 1.35591 * 126.08744 * 175.56354 * 3 2 1 5 5 C 1.41054 * 107.79960 * 180.14813 * 4 3 2 6 6 C 1.47725 * 125.98232 * 179.86775 * 5 4 3 7 7 O 1.21569 * 119.99804 * 359.70857 * 6 5 4 8 8 N 1.34774 * 119.99901 * 179.71246 * 6 5 4 9 9 C 1.46505 * 119.99897 * 179.97438 * 8 6 5 10 10 C 1.53003 * 109.47159 * 180.02562 * 9 8 6 11 11 C 1.52996 * 109.51255 * 305.00431 * 10 9 8 12 12 C 1.53289 * 109.51190 * 184.90021 * 10 9 8 13 13 N 1.47148 * 108.38437 * 187.72381 * 12 10 9 14 14 C 1.36937 * 120.98451 * 230.51303 * 13 12 10 15 15 H 1.07995 * 120.00474 * 153.52645 * 14 13 12 16 16 C 1.38817 * 119.99877 * 333.53172 * 14 13 12 17 17 N 1.31619 * 119.99855 * 343.64570 * 16 14 13 18 18 Si 1.86793 * 120.00323 * 163.65047 * 16 14 13 19 19 H 1.48500 * 109.47220 * 89.99414 * 18 16 14 20 20 H 1.48496 * 109.47412 * 209.99851 * 18 16 14 21 21 H 1.48500 * 109.47166 * 329.99861 * 18 16 14 22 22 C 1.47156 * 118.03730 * 50.53685 * 13 12 10 23 23 C 1.53294 * 108.38157 * 309.46111 * 22 13 12 24 24 O 1.42963 * 109.55208 * 65.12617 * 10 9 8 25 25 N 1.31866 * 108.03946 * 359.59654 * 5 4 3 26 26 N 1.35845 * 126.08139 * 355.27134 * 3 2 1 27 27 C 1.46499 * 125.94762 * 359.97438 * 26 3 2 28 28 H 1.08999 * 109.46565 * 295.13983 * 1 2 3 29 29 H 1.08998 * 109.46765 * 55.14341 * 1 2 3 30 30 H 1.09000 * 109.46856 * 175.14012 * 1 2 3 31 31 H 1.07998 * 126.10252 * 0.02647 * 4 3 2 32 32 H 0.97000 * 120.00303 * 0.02562 * 8 6 5 33 33 H 1.08996 * 109.46840 * 59.99930 * 9 8 6 34 34 H 1.09003 * 109.47101 * 299.99905 * 9 8 6 35 35 H 1.09008 * 109.46760 * 299.89614 * 11 10 9 36 36 H 1.08998 * 109.47324 * 59.89376 * 11 10 9 37 37 H 1.08999 * 109.47592 * 179.89873 * 11 10 9 38 38 H 1.09004 * 109.68523 * 307.44773 * 12 10 9 39 39 H 1.08998 * 109.68590 * 67.96236 * 12 10 9 40 40 H 0.97001 * 120.00125 * 180.02562 * 17 16 14 41 41 H 1.08998 * 109.68108 * 69.18897 * 22 13 12 42 42 H 1.09003 * 109.68133 * 189.74664 * 22 13 12 43 43 H 1.09002 * 109.51203 * 172.22508 * 23 22 13 44 44 H 1.08999 * 109.51935 * 292.33214 * 23 22 13 45 45 H 1.09000 * 109.47078 * 276.36592 * 27 26 3 46 46 H 1.09000 * 109.47513 * 36.37011 * 27 26 3 47 47 H 1.09008 * 109.46720 * 156.36842 * 27 26 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0455 1.2097 0.0000 4 6 3.3814 1.4253 0.0848 5 6 3.5961 2.8191 0.0540 6 6 4.9066 3.4972 0.1247 7 8 5.9256 2.8416 0.2240 8 7 4.9725 4.8425 0.0790 9 6 6.2722 5.5150 0.1497 10 6 6.0672 7.0296 0.0784 11 6 5.2678 7.3785 -1.1786 12 6 7.4304 7.7290 0.0289 13 7 7.2126 9.1793 0.1488 14 6 7.7786 10.0531 -0.7408 15 1 7.3129 11.0090 -0.9295 16 6 8.9512 9.7101 -1.4000 17 7 9.6901 8.7162 -0.9544 18 14 9.4804 10.6591 -2.9193 19 1 10.3355 11.8039 -2.5150 20 1 10.2474 9.7624 -3.8208 21 1 8.2789 11.1656 -3.6301 22 6 6.3689 9.6631 1.2531 23 6 5.0573 8.8695 1.2429 24 8 5.3535 7.4709 1.2359 25 7 2.4226 3.4106 -0.0548 26 7 1.4338 2.4193 -0.0905 27 6 -0.0087 2.6471 -0.2059 28 1 -0.3632 0.4366 0.9303 29 1 -0.3633 0.5873 -0.8433 30 1 -0.3633 -1.0240 -0.0871 31 1 4.1449 0.6655 0.1639 32 1 4.1594 5.3656 0.0002 33 1 6.8940 5.1924 -0.6853 34 1 6.7632 5.2590 1.0886 35 1 5.8147 7.0458 -2.0609 36 1 4.2988 6.8809 -1.1427 37 1 5.1207 8.4574 -1.2279 38 1 8.0515 7.3815 0.8545 39 1 7.9222 7.5081 -0.9185 40 1 10.5096 8.4767 -1.4147 41 1 6.8830 9.5104 2.2020 42 1 6.1572 10.7235 1.1160 43 1 4.4768 9.1142 2.1324 44 1 4.4838 9.1254 0.3520 45 1 -0.3091 2.5531 -1.2495 46 1 -0.5422 1.9095 0.3936 47 1 -0.2482 3.6484 0.1523 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001108063101.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:31:11 Heat of formation + Delta-G solvation = 15.374544 kcal Electronic energy + Delta-G solvation = -30015.936168 eV Core-core repulsion = 25817.411735 eV Total energy + Delta-G solvation = -4198.524433 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.85973 -39.68177 -38.85725 -38.23978 -34.92328 -34.29717 -33.77872 -31.77259 -31.22597 -30.31459 -28.32877 -27.91131 -27.06264 -26.28531 -25.50439 -23.22927 -22.99490 -21.74437 -21.06469 -19.98457 -18.77450 -18.31321 -17.08288 -17.04616 -16.55033 -16.08808 -15.77787 -15.52835 -15.30498 -15.05023 -14.93103 -14.54073 -14.36752 -14.21703 -13.99728 -13.75555 -13.47124 -13.45380 -13.26267 -12.97330 -12.69923 -12.43694 -11.93797 -11.82768 -11.66913 -11.53670 -11.15965 -11.04497 -10.97594 -10.79122 -10.63292 -10.28800 -10.23267 -10.11160 -9.90024 -9.50090 -9.44656 -9.00511 -8.78534 -8.66524 -8.51486 -6.70924 -5.82294 -3.25808 1.20770 1.83701 2.00964 2.50879 3.32585 3.36551 3.42954 3.44217 3.46379 3.90722 4.28210 4.29444 4.37910 4.45765 4.57414 4.64001 4.74097 4.97381 5.05553 5.17592 5.24914 5.36908 5.52851 5.55906 5.63519 5.68709 5.73079 5.96274 5.98183 6.05529 6.12907 6.17997 6.19509 6.34384 6.50559 6.60592 6.70708 6.79686 6.86390 6.95444 7.09639 7.11497 7.50368 7.72575 7.73550 7.93072 8.32511 8.35781 9.13175 9.76190 10.33648 11.25693 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.021350 B = 0.002402 C = 0.002326 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1311.190978 B =11652.026545 C =12032.630595 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.010 3.990 2 O -0.288 6.288 3 C 0.266 3.734 4 C -0.233 4.233 5 C 0.064 3.936 6 C 0.594 3.406 7 O -0.527 6.527 8 N -0.701 5.701 9 C 0.138 3.862 10 C 0.078 3.922 11 C -0.163 4.163 12 C 0.160 3.840 13 N -0.591 5.591 14 C -0.254 4.254 15 H 0.067 0.933 16 C 0.003 3.997 17 N -0.901 5.901 18 Si 0.903 3.097 19 H -0.287 1.287 20 H -0.289 1.289 21 H -0.280 1.280 22 C 0.109 3.891 23 C 0.046 3.954 24 O -0.383 6.383 25 N -0.248 5.248 26 N -0.394 5.394 27 C 0.076 3.924 28 H 0.063 0.937 29 H 0.064 0.936 30 H 0.109 0.891 31 H 0.166 0.834 32 H 0.408 0.592 33 H 0.086 0.914 34 H 0.078 0.922 35 H 0.063 0.937 36 H 0.043 0.957 37 H 0.073 0.927 38 H 0.030 0.970 39 H 0.097 0.903 40 H 0.256 0.744 41 H 0.026 0.974 42 H 0.061 0.939 43 H 0.079 0.921 44 H 0.048 0.952 45 H 0.078 0.922 46 H 0.096 0.904 47 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.111 -13.952 1.531 26.190 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.085 4.085 2 O -0.194 6.194 3 C 0.100 3.900 4 C -0.263 4.263 5 C -0.104 4.104 6 C 0.376 3.624 7 O -0.401 6.401 8 N -0.352 5.352 9 C 0.015 3.985 10 C 0.037 3.963 11 C -0.220 4.220 12 C 0.033 3.967 13 N -0.314 5.314 14 C -0.383 4.383 15 H 0.085 0.915 16 C -0.196 4.196 17 N -0.545 5.545 18 Si 0.732 3.268 19 H -0.214 1.214 20 H -0.215 1.215 21 H -0.205 1.205 22 C -0.017 4.017 23 C -0.032 4.032 24 O -0.303 6.303 25 N -0.079 5.079 26 N -0.192 5.192 27 C -0.065 4.065 28 H 0.081 0.919 29 H 0.083 0.917 30 H 0.127 0.873 31 H 0.184 0.816 32 H 0.245 0.755 33 H 0.104 0.896 34 H 0.096 0.904 35 H 0.082 0.918 36 H 0.062 0.938 37 H 0.092 0.908 38 H 0.048 0.952 39 H 0.115 0.885 40 H 0.066 0.934 41 H 0.044 0.956 42 H 0.079 0.921 43 H 0.098 0.902 44 H 0.066 0.934 45 H 0.097 0.903 46 H 0.114 0.886 47 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -21.883 -13.769 1.580 25.902 hybrid contribution -0.028 0.267 -0.937 0.975 sum -21.910 -13.502 0.643 25.744 Atomic orbital electron populations 1.23652 0.78074 1.05335 1.01450 1.86311 1.21537 1.21608 1.89950 1.19553 0.91113 0.78932 1.00438 1.20367 0.92073 0.95676 1.18207 1.21951 0.92918 0.93071 1.02433 1.16874 0.85766 0.82228 0.77486 1.90817 1.34230 1.65296 1.49806 1.45914 1.11226 1.05525 1.72556 1.21446 0.83950 0.89837 1.03315 1.22547 0.96208 0.92002 0.85521 1.22213 0.98770 1.03156 0.97886 1.21299 0.89503 0.82974 1.02909 1.43991 1.57015 1.01516 1.28897 1.19137 1.03267 0.99577 1.16302 0.91489 1.25046 0.95342 0.98780 1.00384 1.70004 1.14010 1.31043 1.39488 0.86300 0.78315 0.79163 0.83012 1.21372 1.21458 1.20508 1.21601 0.91213 0.96927 0.91980 1.23031 0.97650 0.82061 1.00429 1.87834 1.76327 1.23864 1.42252 1.77758 0.95230 1.10912 1.24013 1.49069 1.07175 1.03037 1.59870 1.22547 0.74847 1.05698 1.03380 0.91875 0.91717 0.87261 0.81609 0.75506 0.89563 0.90399 0.91813 0.93849 0.90790 0.95161 0.88458 0.93415 0.95642 0.92095 0.90242 0.93399 0.90335 0.88570 0.88268 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.04 9.37 101.05 0.95 0.98 16 2 O -0.29 -2.58 10.57 -19.02 -0.20 -2.78 16 3 C 0.27 2.98 7.78 -16.72 -0.13 2.85 16 4 C -0.23 -3.13 10.59 -39.46 -0.42 -3.54 16 5 C 0.06 0.94 7.09 -82.91 -0.59 0.36 16 6 C 0.59 9.94 7.83 -12.38 -0.10 9.84 16 7 O -0.53 -10.23 16.90 5.30 0.09 -10.14 16 8 N -0.70 -11.25 5.19 -61.28 -0.32 -11.57 16 9 C 0.14 2.45 4.85 -4.04 -0.02 2.43 16 10 C 0.08 1.49 0.78 -90.47 -0.07 1.42 16 11 C -0.16 -2.87 7.87 37.16 0.29 -2.58 16 12 C 0.16 3.75 4.11 -3.54 -0.01 3.73 16 13 N -0.59 -14.45 2.57 -171.83 -0.44 -14.90 16 14 C -0.25 -6.76 9.65 -15.06 -0.15 -6.90 16 15 H 0.07 1.75 7.88 -52.49 -0.41 1.33 16 16 C 0.00 0.09 4.96 -17.43 -0.09 0.00 16 17 N -0.90 -25.72 11.12 55.49 0.62 -25.10 16 18 Si 0.90 21.34 29.58 -169.99 -5.03 16.31 16 19 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 20 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 21 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 22 C 0.11 2.26 6.73 -3.53 -0.02 2.24 16 23 C 0.05 0.82 6.60 37.31 0.25 1.06 16 24 O -0.38 -7.29 10.18 -35.23 -0.36 -7.65 16 25 N -0.25 -3.32 12.26 33.34 0.41 -2.92 16 26 N -0.39 -4.10 4.04 -68.18 -0.28 -4.37 16 27 C 0.08 0.39 9.63 59.85 0.58 0.97 16 28 H 0.06 0.17 6.57 -51.93 -0.34 -0.17 16 29 H 0.06 0.17 5.94 -51.93 -0.31 -0.14 16 30 H 0.11 0.20 8.14 -51.93 -0.42 -0.22 16 31 H 0.17 2.11 8.06 -52.49 -0.42 1.69 16 32 H 0.41 6.16 6.69 -40.82 -0.27 5.89 16 33 H 0.09 1.54 8.14 -51.93 -0.42 1.12 16 34 H 0.08 1.45 8.14 -51.93 -0.42 1.03 16 35 H 0.06 1.14 8.14 -51.92 -0.42 0.71 16 36 H 0.04 0.66 6.58 -51.93 -0.34 0.32 16 37 H 0.07 1.41 6.11 -51.93 -0.32 1.09 16 38 H 0.03 0.77 8.14 -51.93 -0.42 0.35 16 39 H 0.10 2.51 6.14 -51.93 -0.32 2.19 16 40 H 0.26 7.08 8.31 -40.82 -0.34 6.74 16 41 H 0.03 0.55 8.14 -51.93 -0.42 0.13 16 42 H 0.06 1.19 7.96 -51.93 -0.41 0.78 16 43 H 0.08 1.18 8.14 -51.93 -0.42 0.76 16 44 H 0.05 0.82 6.25 -51.93 -0.32 0.50 16 45 H 0.08 0.29 7.72 -51.93 -0.40 -0.12 16 46 H 0.10 0.24 4.51 -51.93 -0.23 0.01 16 47 H 0.10 0.47 8.14 -51.92 -0.42 0.05 16 LS Contribution 375.40 15.07 5.66 5.66 Total: -1.00 -33.52 375.40 -6.01 -39.52 By element: Atomic # 1 Polarization: 11.71 SS G_CDS: -6.63 Total: 5.08 kcal Atomic # 6 Polarization: 12.38 SS G_CDS: 0.47 Total: 12.85 kcal Atomic # 7 Polarization: -58.85 SS G_CDS: -0.01 Total: -58.86 kcal Atomic # 8 Polarization: -20.10 SS G_CDS: -0.47 Total: -20.57 kcal Atomic # 14 Polarization: 21.34 SS G_CDS: -5.03 Total: 16.31 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -33.52 -6.01 -39.52 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001108063101.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.899 kcal (2) G-P(sol) polarization free energy of solvation -33.517 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.382 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.008 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.525 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.375 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds