Wall clock time and date at job start Tue Mar 31 2020 21:46:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.29947 * 126.28923 * 2 1 4 4 O 1.21302 * 110.25284 * 179.97438 * 3 2 1 5 5 C 1.33641 * 109.80788 * 359.97438 * 4 3 2 6 6 C 1.50703 * 126.55131 * 179.97438 * 5 4 3 7 7 C 1.53001 * 109.47325 * 270.03040 * 6 5 4 8 8 C 1.50707 * 109.46867 * 179.97438 * 7 6 5 9 9 O 1.21276 * 119.99942 * 0.02562 * 8 7 6 10 10 N 1.34772 * 119.99501 * 180.02562 * 8 7 6 11 11 C 1.46502 * 119.99716 * 179.97438 * 10 8 7 12 12 C 1.53000 * 109.47269 * 179.97438 * 11 10 8 13 13 C 1.52999 * 109.51074 * 60.10061 * 12 11 10 14 14 C 1.53290 * 109.51494 * 180.25274 * 12 11 10 15 15 N 1.47232 * 108.40798 * 172.23175 * 14 12 11 16 16 C 1.36930 * 121.03328 * 129.46021 * 15 14 12 17 17 H 1.08002 * 120.00530 * 206.18598 * 16 15 14 18 18 C 1.38816 * 119.99608 * 26.18827 * 16 15 14 19 19 N 1.31615 * 120.00526 * 16.88476 * 18 16 15 20 20 Si 1.86806 * 119.99896 * 196.88547 * 18 16 15 21 21 H 1.48493 * 109.47161 * 89.99376 * 20 18 16 22 22 H 1.48497 * 109.47448 * 210.00216 * 20 18 16 23 23 H 1.48503 * 109.46954 * 330.00010 * 20 18 16 24 24 C 1.47154 * 117.98230 * 309.48797 * 15 14 12 25 25 C 1.53298 * 108.41825 * 50.51870 * 24 15 14 26 26 O 1.42959 * 109.51371 * 300.00367 * 12 11 10 27 27 N 1.31132 * 106.90196 * 0.22734 * 5 4 3 28 28 H 1.09004 * 109.46876 * 89.97924 * 1 2 3 29 29 H 1.08992 * 109.47271 * 209.98073 * 1 2 3 30 30 H 1.09005 * 109.47062 * 329.98196 * 1 2 3 31 31 H 1.09001 * 109.47467 * 150.02449 * 6 5 4 32 32 H 1.08999 * 109.46824 * 30.02831 * 6 5 4 33 33 H 1.08999 * 109.46841 * 59.99897 * 7 6 5 34 34 H 1.08999 * 109.46999 * 299.99684 * 7 6 5 35 35 H 0.97000 * 120.00195 * 359.97438 * 10 8 7 36 36 H 1.09002 * 109.46877 * 59.99845 * 11 10 8 37 37 H 1.08999 * 109.47195 * 299.99813 * 11 10 8 38 38 H 1.08996 * 109.47525 * 299.90181 * 13 12 11 39 39 H 1.09004 * 109.47010 * 59.89918 * 13 12 11 40 40 H 1.09003 * 109.47551 * 179.89847 * 13 12 11 41 41 H 1.09001 * 109.68414 * 291.94993 * 14 12 11 42 42 H 1.09001 * 109.68139 * 52.50357 * 14 12 11 43 43 H 0.97002 * 120.00383 * 180.02562 * 19 18 16 44 44 H 1.08997 * 109.68310 * 290.77188 * 24 15 14 45 45 H 1.09005 * 109.67869 * 170.25970 * 24 15 14 46 46 H 1.09001 * 109.51044 * 67.59999 * 25 24 15 47 47 H 1.09000 * 109.51036 * 187.70217 * 25 24 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2761 1.0474 0.0000 4 8 3.4419 0.7123 0.0005 5 6 3.5298 -0.6212 0.0015 6 6 4.7969 -1.4371 0.0018 7 6 5.2258 -1.7137 -1.4406 8 6 6.4933 -2.5291 -1.4401 9 8 7.0029 -2.8571 -0.3897 10 7 7.0602 -2.8937 -2.6072 11 6 8.2926 -3.6859 -2.6068 12 6 8.7215 -3.9626 -4.0491 13 6 8.9706 -2.6370 -4.7714 14 6 10.0075 -4.7968 -4.0499 15 7 10.2949 -5.2068 -5.4344 16 6 11.5321 -5.0089 -5.9869 17 1 11.6355 -4.9053 -7.0570 18 6 12.6535 -4.9414 -5.1715 19 7 12.5960 -5.3884 -3.9349 20 14 14.2444 -4.2163 -5.8295 21 1 14.2697 -2.7555 -5.5639 22 1 15.3991 -4.8622 -5.1551 23 1 14.3292 -4.4548 -7.2928 24 6 9.2119 -5.8355 -6.2073 25 6 7.9646 -4.9506 -6.1015 26 8 7.6900 -4.6871 -4.7234 27 7 2.3030 -1.0841 -0.0035 28 1 -0.3633 0.0004 -1.0277 29 1 -0.3633 -0.8901 0.5135 30 1 -0.3633 0.8899 0.5141 31 1 4.6206 -2.3819 0.5159 32 1 5.5841 -0.8854 0.5155 33 1 5.4022 -0.7688 -1.9546 34 1 4.4386 -2.2654 -1.9543 35 1 6.6524 -2.6316 -3.4473 36 1 8.1169 -4.6309 -2.0927 37 1 9.0794 -3.1336 -2.0930 38 1 8.0544 -2.0466 -4.7736 39 1 9.7572 -2.0850 -4.2567 40 1 9.2779 -2.8348 -5.7983 41 1 10.8336 -4.1984 -3.6656 42 1 9.8723 -5.6804 -3.4261 43 1 13.3796 -5.3409 -3.3651 44 1 8.9966 -6.8236 -5.8007 45 1 9.5107 -5.9255 -7.2517 46 1 8.1401 -4.0102 -6.6240 47 1 7.1148 -5.4640 -6.5513 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001108107980.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:46:55 Heat of formation + Delta-G solvation = -16.517103 kcal Electronic energy + Delta-G solvation = -29353.900895 eV Core-core repulsion = 25153.993536 eV Total energy + Delta-G solvation = -4199.907359 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -46.64278 -41.12979 -40.21074 -37.17933 -36.55620 -35.96314 -35.58143 -33.32389 -33.17237 -32.40685 -30.08424 -29.55741 -28.22225 -27.75083 -25.96824 -24.96226 -24.45851 -22.92766 -22.25065 -21.34129 -20.26564 -19.26504 -18.91160 -18.55068 -18.09727 -17.43040 -16.97427 -16.81463 -16.46733 -16.12795 -15.84347 -15.56044 -15.23229 -15.20460 -15.00286 -14.65825 -14.55935 -14.46416 -14.20959 -13.81447 -13.71379 -13.46904 -13.36122 -13.19787 -13.12933 -12.89842 -12.77798 -12.49738 -12.43360 -12.32866 -12.22151 -12.11632 -12.06107 -11.92831 -11.82033 -11.16697 -11.03132 -10.84436 -10.70302 -10.48102 -10.05315 -8.70300 -7.88382 -5.34976 0.06761 1.15333 1.47053 1.48509 1.56927 1.66731 1.70500 2.23896 2.49429 2.69229 2.82930 3.06605 3.26150 3.53121 3.63012 3.86946 3.96432 4.04866 4.06173 4.13867 4.16174 4.45173 4.46932 4.49252 4.54106 4.58828 4.61813 4.65382 4.69084 4.74583 4.81170 4.84027 4.93392 4.96315 5.00555 5.08140 5.11287 5.15521 5.23807 5.39582 5.43583 5.56363 5.63294 6.30809 6.39718 6.59272 7.08577 7.11846 7.27717 7.77866 8.31702 9.17054 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.023354 B = 0.002025 C = 0.001956 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1198.639496 B =13822.738248 C =14314.047530 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 C 0.162 3.838 3 N -0.411 5.411 4 O 0.070 5.930 5 C 0.199 3.801 6 C -0.008 4.008 7 C -0.125 4.125 8 C 0.515 3.485 9 O -0.583 6.583 10 N -0.706 5.706 11 C 0.150 3.850 12 C 0.093 3.907 13 C -0.153 4.153 14 C 0.166 3.834 15 N -0.607 5.607 16 C -0.258 4.258 17 H 0.073 0.927 18 C -0.050 4.050 19 N -0.936 5.936 20 Si 0.966 3.034 21 H -0.283 1.283 22 H -0.299 1.299 23 H -0.268 1.268 24 C 0.101 3.899 25 C 0.053 3.947 26 O -0.384 6.384 27 N -0.502 5.502 28 H 0.104 0.896 29 H 0.101 0.899 30 H 0.097 0.903 31 H 0.116 0.884 32 H 0.120 0.880 33 H 0.128 0.872 34 H 0.119 0.881 35 H 0.416 0.584 36 H 0.054 0.946 37 H 0.074 0.926 38 H 0.080 0.920 39 H 0.054 0.946 40 H 0.058 0.942 41 H 0.067 0.933 42 H -0.008 1.008 43 H 0.250 0.750 44 H 0.011 0.989 45 H 0.070 0.930 46 H 0.061 0.939 47 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.880 11.362 2.811 24.814 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.110 4.110 3 N -0.122 5.122 4 O 0.014 5.986 5 C -0.022 4.022 6 C -0.048 4.048 7 C -0.166 4.166 8 C 0.303 3.697 9 O -0.463 6.463 10 N -0.358 5.358 11 C 0.025 3.975 12 C 0.052 3.948 13 C -0.211 4.211 14 C 0.039 3.961 15 N -0.331 5.331 16 C -0.388 4.388 17 H 0.091 0.909 18 C -0.245 4.245 19 N -0.582 5.582 20 Si 0.794 3.206 21 H -0.210 1.210 22 H -0.226 1.226 23 H -0.193 1.193 24 C -0.024 4.024 25 C -0.024 4.024 26 O -0.303 6.303 27 N -0.236 5.236 28 H 0.122 0.878 29 H 0.120 0.880 30 H 0.116 0.884 31 H 0.134 0.866 32 H 0.138 0.862 33 H 0.146 0.854 34 H 0.137 0.863 35 H 0.253 0.747 36 H 0.072 0.928 37 H 0.092 0.908 38 H 0.099 0.901 39 H 0.074 0.926 40 H 0.077 0.923 41 H 0.085 0.915 42 H 0.010 0.990 43 H 0.059 0.941 44 H 0.029 0.971 45 H 0.089 0.911 46 H 0.079 0.921 47 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -22.180 11.555 3.706 25.282 hybrid contribution 1.695 -0.145 -0.496 1.772 sum -20.485 11.410 3.209 23.666 Atomic orbital electron populations 1.20351 0.80520 1.05700 1.05594 1.26645 1.02150 0.83022 0.99210 1.74650 0.89775 1.24724 1.23071 1.85281 1.22239 1.25159 1.65889 1.29034 0.97119 0.81904 0.94106 1.19994 0.87371 0.98838 0.98566 1.21563 0.95002 1.02666 0.97325 1.20885 0.86078 0.79712 0.83035 1.90730 1.65618 1.57468 1.32484 1.45795 1.26320 1.54288 1.09421 1.21010 0.87040 0.95333 0.94165 1.22200 0.88785 0.92428 0.91406 1.22116 1.02005 0.95599 1.01361 1.21094 0.94245 0.95015 0.85737 1.44264 1.08694 1.68928 1.11219 1.19501 0.83998 1.42775 0.92503 0.90947 1.25775 1.00601 1.01036 0.97121 1.70177 1.29971 1.49129 1.08891 0.85288 0.79201 0.78034 0.78064 1.20998 1.22603 1.19255 1.21823 0.89679 0.94518 0.96427 1.23088 0.97826 0.99154 0.82326 1.87819 1.42464 1.75960 1.24058 1.71973 1.00327 1.29905 1.21414 0.87806 0.88004 0.88435 0.86583 0.86200 0.85444 0.86308 0.74706 0.92763 0.90808 0.90091 0.92645 0.92252 0.91500 0.99003 0.94071 0.97063 0.91138 0.92097 0.86508 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.63 10.51 71.24 0.75 0.12 16 2 C 0.16 2.98 8.22 138.46 1.14 4.12 16 3 N -0.41 -8.65 12.16 -60.31 -0.73 -9.38 16 4 O 0.07 1.36 11.31 74.85 0.85 2.20 16 5 C 0.20 3.43 7.77 88.38 0.69 4.12 16 6 C -0.01 -0.12 5.13 29.85 0.15 0.03 16 7 C -0.12 -1.62 5.68 29.85 0.17 -1.45 16 8 C 0.52 11.49 7.83 87.66 0.69 12.18 16 9 O -0.58 -17.97 15.98 -3.02 -0.05 -18.02 16 10 N -0.71 -16.31 5.15 -463.06 -2.39 -18.70 16 11 C 0.15 4.73 4.82 86.38 0.42 5.15 16 12 C 0.09 3.21 0.76 -10.70 -0.01 3.20 16 13 C -0.15 -4.65 7.92 71.98 0.57 -4.08 16 14 C 0.17 7.73 4.12 86.34 0.36 8.08 16 15 N -0.61 -29.07 2.57 -697.33 -1.79 -30.87 16 16 C -0.26 -13.52 9.65 84.04 0.81 -12.71 16 17 H 0.07 3.66 7.88 -2.91 -0.02 3.64 16 18 C -0.05 -2.70 4.95 84.86 0.42 -2.28 16 19 N -0.94 -54.36 11.14 21.65 0.24 -54.12 16 20 Si 0.97 43.59 29.59 68.60 2.03 45.62 16 21 H -0.28 -12.52 7.11 99.48 0.71 -11.81 16 22 H -0.30 -13.82 7.11 99.48 0.71 -13.12 16 23 H -0.27 -11.47 7.11 99.48 0.71 -10.77 16 24 C 0.10 3.94 6.73 86.35 0.58 4.52 16 25 C 0.05 1.61 6.60 72.08 0.48 2.09 16 26 O -0.38 -12.58 9.97 -148.98 -1.49 -14.06 16 27 N -0.50 -9.93 11.55 -303.18 -3.50 -13.43 16 28 H 0.10 0.73 8.14 -2.39 -0.02 0.71 16 29 H 0.10 0.80 8.14 -2.39 -0.02 0.78 16 30 H 0.10 0.74 8.14 -2.38 -0.02 0.72 16 31 H 0.12 1.81 8.10 -2.39 -0.02 1.79 16 32 H 0.12 1.56 8.10 -2.39 -0.02 1.54 16 33 H 0.13 1.06 8.14 -2.39 -0.02 1.05 16 34 H 0.12 1.27 8.14 -2.39 -0.02 1.25 16 35 H 0.42 7.53 7.20 -92.71 -0.67 6.86 16 36 H 0.05 1.94 8.14 -2.39 -0.02 1.92 16 37 H 0.07 2.47 8.14 -2.39 -0.02 2.45 16 38 H 0.08 1.82 6.87 -2.39 -0.02 1.80 16 39 H 0.05 1.77 8.14 -2.38 -0.02 1.75 16 40 H 0.06 1.99 6.12 -2.39 -0.01 1.98 16 41 H 0.07 3.51 6.14 -2.39 -0.01 3.49 16 42 H -0.01 -0.43 8.14 -2.39 -0.02 -0.45 16 43 H 0.25 14.18 8.31 -92.71 -0.77 13.41 16 44 H 0.01 0.47 8.14 -2.39 -0.02 0.45 16 45 H 0.07 2.58 7.96 -2.38 -0.02 2.56 16 46 H 0.06 1.73 6.25 -2.39 -0.01 1.71 16 47 H 0.12 2.73 8.14 -2.39 -0.02 2.71 16 Total: -1.00 -71.94 383.92 0.70 -71.25 By element: Atomic # 1 Polarization: 16.08 SS G_CDS: 0.33 Total: 16.41 kcal Atomic # 6 Polarization: 15.89 SS G_CDS: 7.20 Total: 23.09 kcal Atomic # 7 Polarization: -118.32 SS G_CDS: -8.17 Total: -126.50 kcal Atomic # 8 Polarization: -29.19 SS G_CDS: -0.69 Total: -29.87 kcal Atomic # 14 Polarization: 43.59 SS G_CDS: 2.03 Total: 45.62 kcal Total: -71.94 0.70 -71.25 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001108107980.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.729 kcal (2) G-P(sol) polarization free energy of solvation -71.945 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.216 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.698 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.247 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.517 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds